NO06G00840.1, NO06G00840.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO06G00840.1
Unique Name	NO06G00840.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1911
Alignment location	chr6:285910..288083 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr6	genome	chr6:285910..288083 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO06G00840.1 vs.
Match: EWM26124.1 (chaperonin [Nannochloropsis gaditana])

HSP 1 Score: 755.0 bits (1948), Expect = 1.500e-214
Identity = 395/507 (77.91%), Postives = 437/507 (86.19%), Query Frame = 0

Query:    2 TTKSLSPTSTPLSMAGRLLALLFLLISCSLPTLGFLQPPRVPLASYATARRHGSIQMMAKNVRFGDKGLDKLVEGINVVGDAVKVTLGPLGRNVVLSRVDEPYPQIVNDGATIAREIDLVNPEVNVGVRLIQEVAKTSDRRAGDGTSTSIIMTQAIVNQGLKYVKSGMNPVSLRKGIMGATNMLVERIPLVARKVTGVEDLEKVATVSTGGDKEMAKIIGSVFGRVDLDAKLGGATLLEDGNTSEDELEISSGMRLDRSGFESAYYVTDMERMVCELRKPRVLVTNYPLLHNYQMIPIMEEIAKTGEPLLVVAEETKDDALSLLVVNKLRGTVEVCSVRAPFAGARRKQFLQDIALATGATFIDSDLGMMLQTMTMDMLGVAESAVTTREHTTLRTSEIFDDIIAEHVKNLKKELDGCDNVYDEQKLQYRIAALTGGVAVIKVGAATETELKDKKLRYEDALNSVRTAIEMGVFPGGGQRLSTWGKACGRRFWQRFPIRKRELGRRL 509
            TT S+ P S       + L LL +L SC+LP+L FL    + L     + RH +++MMAKNV+FGDKGLDKLVEGINVVG+AVKVTLGP GRNVVLSR DEPYPQIVNDG TIAREIDL N EVNVGVRLIQEVAK SDRRAGDGT+TSII+TQAIVNQGLKYVKSGMNPVSLRKGI GAT ML +RIP +ARKV GVEDLE +ATVSTGGD++MAKII SVFGRVDLDAKLGGATLLEDGNT+EDELE+SSGMRLDRSG+++AY+VTD ERMVCELRKPRVLVTNYPLLH+YQ++PI+EE+AKTGE LL+V+EETKD+ALSLLVVNKLRG V VCSVRAPFAGARRKQFLQDIALATGATFIDSDLGMMLQT TM+MLGVAE+A TTREHTTLRTSEIF+DIIAEHV NLK+ELD CDNVYDEQKLQYR+AAL+GGVAVIKVGAATETELKDKKLRYEDALNSVRTAIEMGV PGGG  L   G          FP ++   G  +
Sbjct:   21 TTMSIRPRSR------QPLTLLLVLASCTLPSLAFLYQGGIRLTPRTHSVRHSTLRMMAKNVKFGDKGLDKLVEGINVVGNAVKVTLGPCGRNVVLSRADEPYPQIVNDGVTIAREIDLANEEVNVGVRLIQEVAKKSDRRAGDGTTTSIIITQAIVNQGLKYVKSGMNPVSLRKGITGATEMLAQRIPTMARKVKGVEDLENIATVSTGGDRDMAKIIASVFGRVDLDAKLGGATLLEDGNTTEDELEVSSGMRLDRSGYDTAYFVTDTERMVCELRKPRVLVTNYPLLHSYQLVPILEEVAKTGESLLIVSEETKDEALSLLVVNKLRGLVNVCSVRAPFAGARRKQFLQDIALATGATFIDSDLGMMLQTATMEMLGVAETATTTREHTTLRTSEIFEDIIAEHVGNLKRELDACDNVYDEQKLQYRVAALSGGVAVIKVGAATETELKDKKLRYEDALNSVRTAIEMGVLPGGGSALVYLGMEMRDEILAAFPDKEERAGAEI 521

The following BLAST results are available for this feature:

BLAST of NO06G00840.1 vs.

BLAST of NO06G00840.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM26124.1	1.500e-214	77.91	chaperonin [Nannochloropsis gaditana]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO06G00840	NO06G00840	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO06G00840.1	NO06G00840.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO06G00840.1.cds1	NO06G00840.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO06G00840.1.cds2	NO06G00840.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr6:285910..288083-
coding sequence from alignment at chr6:285910..288083-

mRNA sequence

>NO06G00840.1 ID=NO06G00840.1|Name=NO06G00840.1|organism=Nannochloropsis oceanica|type=mRNA|length=1911bp
AACAGGGGAGCACCATGACCACAAAGTCATTGTCACCAACGTCTACGCCC
TTGTCGATGGCGGGGCGGCTCCTGGCCTTGCTTTTCTTGCTGATTTCATG
CAGCCTCCCCACTCTTGGCTTCCTGCAGCCTCCAAGGGTCCCTCTGGCCT
CATATGCGACGGCAAGACGACACGGCAGCATCCAGATGATGGCCAAGAAT
GTGCGGTTTGGGGACAAGGGTCTGGACAAATTGGTGGAGGGGATCAACGT
GGTGGGAGACGCGGTCAAGGTAACACTAGGTCCCCTTGGACGGAACGTGG
TCCTCTCGCGGGTAGATGAGCCTTACCCTCAGATAGTGAACGACGGCGCA
ACCATTGCCCGGGAAATTGACCTTGTTAACCCCGAGGTCAATGTGGGCGT
CCGACTGATACAAGAAGTGGCAAAGACGTCCGACCGACGGGCAGGAGATG
GGACCAGCACATCTATCATTATGACCCAAGCCATTGTCAACCAGGGGTTG
AAATACGTCAAATCAGGCATGAATCCCGTCTCCCTTCGCAAAGGAATCAT
GGGCGCCACCAACATGCTGGTCGAACGCATTCCCCTCGTCGCCCGGAAGG
TAACAGGAGTCGAAGACTTAGAAAAAGTCGCAACAGTCTCAACGGGTGGG
GACAAGGAGATGGCCAAGATCATTGGCAGCGTCTTTGGGCGTGTCGATCT
AGATGCGAAGCTAGGCGGAGCTACCCTCCTCGAGGATGGCAACACTAGTG
AGGACGAGCTCGAGATCAGCTCTGGCATGCGCTTGGATCGATCAGGCTTC
GAGTCTGCATATTATGTGACGGACATGGAGAGGATGGTCTGTGAGCTGCG
CAAGCCTCGTGTGCTGGTTACGAACTACCCCCTTCTCCATAACTACCAAA
TGATACCAATCATGGAGGAAATCGCTAAGACTGGGGAGCCCTTACTTGTT
GTCGCCGAAGAGACAAAGGATGACGCCCTATCCCTCCTGGTCGTCAATAA
GCTGCGTGGTACCGTAGAAGTCTGCTCGGTCCGCGCTCCCTTCGCCGGGG
CTCGACGCAAGCAGTTTTTGCAAGATATTGCGTTGGCCACGGGCGCTACG
TTTATTGATTCCGATTTGGGAATGATGCTTCAGACAATGACTATGGACAT
GCTAGGCGTGGCCGAAAGCGCGGTCACTACCCGGGAACACACCACGTTGC
GGACGTCGGAGATTTTTGATGACATCATCGCGGAGCACGTGAAGAACTTG
AAGAAAGAGTTGGATGGGTGCGACAACGTGTACGACGAACAAAAGCTGCA
GTACCGCATCGCCGCACTCACGGGTGGTGTGGCCGTCATTAAGGTAGGAG
CTGCCACCGAGACCGAGCTCAAGGACAAGAAGCTTCGGTACGAAGACGCT
CTTAATTCCGTGCGGACGGCGATTGAGATGGGGGTCTTCCCCGGGGGGGG
TCAGCGCTTGTCTACCTGGGGCAAAGCCTGCGGGAGGAGATTTTGGCAGC
GTTTCCCGATAAGGAAGAGAGAGCTGGGGCGGAGATTATGCTGAAAGCGA
TTGAGGAACCTGTACAGCAGATTGCACGAAACGCTGGGATGTATCCGGGG
AGGGTGCTGGAGAAGATAAAGATGAAGAATGAGTGGGGCTTTGGCATGAA
TGCTGCGACGGGCAAGTATGAGAATTTGCTAGAGACGGGCGTGCTGGACT
CGGCGAGCGTGGTACTGAATGCGTTGACCAACTCAGCCTCCATCGCGGGG
TTGGTCTTGACGACACAAGTGGTTATTACCGAGAAGGCGGAGGGCGCAAT
AAATCAAATGTAGGGACGGGTGGGAAAGGGGACAAGCGGGGCATAATAAT
AGTGATTTACAACGACGGTGGCCTCACATCCGAAGTTAACACAAAGCAAA
CAAGAAAATTT

protein sequence of NO06G00840.1

>NO06G00840.1-protein ID=NO06G00840.1-protein|Name=NO06G00840.1|organism=Nannochloropsis oceanica|type=polypeptide|length=510bp
MTTKSLSPTSTPLSMAGRLLALLFLLISCSLPTLGFLQPPRVPLASYATA
RRHGSIQMMAKNVRFGDKGLDKLVEGINVVGDAVKVTLGPLGRNVVLSRV
DEPYPQIVNDGATIAREIDLVNPEVNVGVRLIQEVAKTSDRRAGDGTSTS
IIMTQAIVNQGLKYVKSGMNPVSLRKGIMGATNMLVERIPLVARKVTGVE
DLEKVATVSTGGDKEMAKIIGSVFGRVDLDAKLGGATLLEDGNTSEDELE
ISSGMRLDRSGFESAYYVTDMERMVCELRKPRVLVTNYPLLHNYQMIPIM
EEIAKTGEPLLVVAEETKDDALSLLVVNKLRGTVEVCSVRAPFAGARRKQ
FLQDIALATGATFIDSDLGMMLQTMTMDMLGVAESAVTTREHTTLRTSEI
FDDIIAEHVKNLKKELDGCDNVYDEQKLQYRIAALTGGVAVIKVGAATET
ELKDKKLRYEDALNSVRTAIEMGVFPGGGQRLSTWGKACGRRFWQRFPIR
KRELGRRLC*

mRNA from alignment at chr6:285910..288083-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO06G00840.1 ID=NO06G00840.1|Name=NO06G00840.1|organism=Nannochloropsis oceanica|type=mRNA|length=2174bp|location=Sequence derived from alignment at chr6:285910..288083- (Nannochloropsis oceanica)
AACAGGGGAGCACCATGACCACAAAGTCATTGTCACCAACGTCTACGCCC
TTGTCGATGGCGGGGCGGCTCCTGGCCTTGCTTTTCTTGCTGATTTCATG
CAGCCTCCCCACTCTTGGCTTCCTGCAGCCTCCAAGGGTCCCTCTGGCCT
CATATGCGACGGCAAGACGACACGGCAGCATCCAGATGATGGCCAAGAAT
GTGCGGTTTGGGGACAAGGGTCTGGACAAATTGGTGGAGGGGATCAACGT
GGTGGGAGACGCGGTCAAGGTGCGTGACGTGTAGAGTATCTTGCATGCAC
ACTTGCGTGTGTGTCTTGCATCCTTGCTCCCATGACAATAGACAAGGATA
AAGAGGAAGCACGGGTGATATGAGGCTTTACATCTTCTTGGCTACAAAAT
GGTGATGTCCTATCATCATCGGCTTTTCCCCAGCCACCCTACACAGCCCC
GCTACTTTGCTTTTCGAACTCAGAACGTCTGATCTTTCTACTTTATCATT
TATTATTTCTACAAATGAACAAAAATTAATAGGTAACACTAGGTCCCCTT
GGACGGAACGTGGTCCTCTCGCGGGTAGATGAGCCTTACCCTCAGATAGT
GAACGACGGCGCAACCATTGCCCGGGAAATTGACCTTGTTAACCCCGAGG
TCAATGTGGGCGTCCGACTGATACAAGAAGTGGCAAAGACGTCCGACCGA
CGGGCAGGAGATGGGACCAGCACATCTATCATTATGACCCAAGCCATTGT
CAACCAGGGGTTGAAATACGTCAAATCAGGCATGAATCCCGTCTCCCTTC
GCAAAGGAATCATGGGCGCCACCAACATGCTGGTCGAACGCATTCCCCTC
GTCGCCCGGAAGGTAACAGGAGTCGAAGACTTAGAAAAAGTCGCAACAGT
CTCAACGGGTGGGGACAAGGAGATGGCCAAGATCATTGGCAGCGTCTTTG
GGCGTGTCGATCTAGATGCGAAGCTAGGCGGAGCTACCCTCCTCGAGGAT
GGCAACACTAGTGAGGACGAGCTCGAGATCAGCTCTGGCATGCGCTTGGA
TCGATCAGGCTTCGAGTCTGCATATTATGTGACGGACATGGAGAGGATGG
TCTGTGAGCTGCGCAAGCCTCGTGTGCTGGTTACGAACTACCCCCTTCTC
CATAACTACCAAATGATACCAATCATGGAGGAAATCGCTAAGACTGGGGA
GCCCTTACTTGTTGTCGCCGAAGAGACAAAGGATGACGCCCTATCCCTCC
TGGTCGTCAATAAGCTGCGTGGTACCGTAGAAGTCTGCTCGGTCCGCGCT
CCCTTCGCCGGGGCTCGACGCAAGCAGTTTTTGCAAGATATTGCGTTGGC
CACGGGCGCTACGTTTATTGATTCCGATTTGGGAATGATGCTTCAGACAA
TGACTATGGACATGCTAGGCGTGGCCGAAAGCGCGGTCACTACCCGGGAA
CACACCACGTTGCGGACGTCGGAGATTTTTGATGACATCATCGCGGAGCA
CGTGAAGAACTTGAAGAAAGAGTTGGATGGGTGCGACAACGTGTACGACG
AACAAAAGCTGCAGTACCGCATCGCCGCACTCACGGGTGGTGTGGCCGTC
ATTAAGGTAGGAGCTGCCACCGAGACCGAGCTCAAGGACAAGAAGCTTCG
GTACGAAGACGCTCTTAATTCCGTGCGGACGGCGATTGAGATGGGGGTCT
TCCCCGGGGGGGGTCAGCGCTTGTCTACCTGGGGCAAAGCCTGCGGGAGG
AGATTTTGGCAGCGTTTCCCGATAAGGAAGAGAGAGCTGGGGCGGAGATT
ATGCTGAAAGCGATTGAGGAACCTGTACAGCAGATTGCACGAAACGCTGG
GATGTATCCGGGGAGGGTGCTGGAGAAGATAAAGATGAAGAATGAGTGGG
GCTTTGGCATGAATGCTGCGACGGGCAAGTATGAGAATTTGCTAGAGACG
GGCGTGCTGGACTCGGCGAGCGTGGTACTGAATGCGTTGACCAACTCAGC
CTCCATCGCGGGGTTGGTCTTGACGACACAAGTGGTTATTACCGAGAAGG
CGGAGGGCGCAATAAATCAAATGTAGGGACGGGTGGGAAAGGGGACAAGC
GGGGCATAATAATAGTGATTTACAACGACGGTGGCCTCACATCCGAAGTT
AACACAAAGCAAACAAGAAAATTT

Coding sequence (CDS) from alignment at chr6:285910..288083-

>NO06G00840.1 ID=NO06G00840.1|Name=NO06G00840.1|organism=Nannochloropsis oceanica|type=CDS|length=1530bp|location=Sequence derived from alignment at chr6:285910..288083- (Nannochloropsis oceanica)
ATGACCACAAAGTCATTGTCACCAACGTCTACGCCCTTGTCGATGGCGGG
GCGGCTCCTGGCCTTGCTTTTCTTGCTGATTTCATGCAGCCTCCCCACTC
TTGGCTTCCTGCAGCCTCCAAGGGTCCCTCTGGCCTCATATGCGACGGCA
AGACGACACGGCAGCATCCAGATGATGGCCAAGAATGTGCGGTTTGGGGA
CAAGGGTCTGGACAAATTGGTGGAGGGGATCAACGTGGTGGGAGACGCGG
TCAAGGTAACACTAGGTCCCCTTGGACGGAACGTGGTCCTCTCGCGGGTA
GATGAGCCTTACCCTCAGATAGTGAACGACGGCGCAACCATTGCCCGGGA
AATTGACCTTGTTAACCCCGAGGTCAATGTGGGCGTCCGACTGATACAAG
AAGTGGCAAAGACGTCCGACCGACGGGCAGGAGATGGGACCAGCACATCT
ATCATTATGACCCAAGCCATTGTCAACCAGGGGTTGAAATACGTCAAATC
AGGCATGAATCCCGTCTCCCTTCGCAAAGGAATCATGGGCGCCACCAACA
TGCTGGTCGAACGCATTCCCCTCGTCGCCCGGAAGGTAACAGGAGTCGAA
GACTTAGAAAAAGTCGCAACAGTCTCAACGGGTGGGGACAAGGAGATGGC
CAAGATCATTGGCAGCGTCTTTGGGCGTGTCGATCTAGATGCGAAGCTAG
GCGGAGCTACCCTCCTCGAGGATGGCAACACTAGTGAGGACGAGCTCGAG
ATCAGCTCTGGCATGCGCTTGGATCGATCAGGCTTCGAGTCTGCATATTA
TGTGACGGACATGGAGAGGATGGTCTGTGAGCTGCGCAAGCCTCGTGTGC
TGGTTACGAACTACCCCCTTCTCCATAACTACCAAATGATACCAATCATG
GAGGAAATCGCTAAGACTGGGGAGCCCTTACTTGTTGTCGCCGAAGAGAC
AAAGGATGACGCCCTATCCCTCCTGGTCGTCAATAAGCTGCGTGGTACCG
TAGAAGTCTGCTCGGTCCGCGCTCCCTTCGCCGGGGCTCGACGCAAGCAG
TTTTTGCAAGATATTGCGTTGGCCACGGGCGCTACGTTTATTGATTCCGA
TTTGGGAATGATGCTTCAGACAATGACTATGGACATGCTAGGCGTGGCCG
AAAGCGCGGTCACTACCCGGGAACACACCACGTTGCGGACGTCGGAGATT
TTTGATGACATCATCGCGGAGCACGTGAAGAACTTGAAGAAAGAGTTGGA
TGGGTGCGACAACGTGTACGACGAACAAAAGCTGCAGTACCGCATCGCCG
CACTCACGGGTGGTGTGGCCGTCATTAAGGTAGGAGCTGCCACCGAGACC
GAGCTCAAGGACAAGAAGCTTCGGTACGAAGACGCTCTTAATTCCGTGCG
GACGGCGATTGAGATGGGGGTCTTCCCCGGGGGGGGTCAGCGCTTGTCTA
CCTGGGGCAAAGCCTGCGGGAGGAGATTTTGGCAGCGTTTCCCGATAAGG
AAGAGAGAGCTGGGGCGGAGATTATGCTGA

Synonyms

Publications