NO06G00810.1, NO06G00810.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G00810.1
Unique NameNO06G00810.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length973
Alignment locationchr6:278443..279738 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:278443..279738 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO06G00810.1 vs.
Match: EWM26153.1 (proteasome subunit alpha type 7 [Nannochloropsis gaditana])

HSP 1 Score: 451.1 bits (1159), Expect = 2.400e-123
Identity = 231/253 (91.30%), Postives = 241/253 (95.26%), Query Frame = 0 
Query:    1 MASRYDRAITVFSPDGHLFQVEYAIEAVKRGSSAVGVRGKNAVILGVERRATAKLQDPRTIKKICKIDEHITLAFAGLTADARVLVNKARLECQSYRLTYEDAPTVEYIARYIARTQQKYTQRGGVRPFGVSCVIAGTNPDGTAVLYQTDPAGTYSAWKATAVGGKNSSNMQEYLEKQWEDALGEEEAIRLTVKTLLEVVDSGAKNMEVAIIKNGEPMHMLDEATLAALAASIEAEQEEAKNKAVAGVSETKD 254
            MASRYDRAITVFSPDGHLFQVEYAIEAVKRGSSAVGVRGK++VILGVERRATAKLQDPRTIKKICKIDEH+TLAFAGLTADARVLVNKARLECQSYRLTYEDAPTVEY+ARYIARTQQKYTQRGGVRPFGVSCVIAGTNPDG+AVLYQTDPAGTYSAWKATAVGG+NSSNMQEYLEKQW D L EE AIRLTVKTLLEVVDSGAKNMEVA+I  G PM MLDEATLAAL+ASIEAEQEEAK KA AG  E+K+
Sbjct:    1 MASRYDRAITVFSPDGHLFQVEYAIEAVKRGSSAVGVRGKSSVILGVERRATAKLQDPRTIKKICKIDEHVTLAFAGLTADARVLVNKARLECQSYRLTYEDAPTVEYVARYIARTQQKYTQRGGVRPFGVSCVIAGTNPDGSAVLYQTDPAGTYSAWKATAVGGRNSSNMQEYLEKQWADDLEEENAIRLTVKTLLEVVDSGAKNMEVAVITQGRPMRMLDEATLAALSASIEAEQEEAKKKASAGSGESKE 253
The following BLAST results are available for this feature:
BLAST of NO06G00810.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26153.12.400e-12391.30proteasome subunit alpha type 7 [Nannochloropsis g... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G00810NO06G00810Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G00810.1NO06G00810.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G00810.1.cds1NO06G00810.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G00810.1.cds2NO06G00810.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G00810.1 ID=NO06G00810.1|Name=NO06G00810.1|organism=Nannochloropsis oceanica|type=mRNA|length=973bp
ACCATCACAGTCAGAGGCACCTTTCATAGCCGTTGGACATCGTCGAGCAG
CCGCAGCCATGGCCAGTCGATACGACCGCGCCATCACGGTCTTCTCGCCC
GACGGGCACTTGTTCCAAGTAGAGTATGCCATCGAGGCTGTCAAGCGTGG
CTCGTCGGCTGTTGGCGTGCGGGGCAAGAACGCGGTTATTCTGGGAGTGG
AGCGCAGGGCAACGGCCAAGCTGCAAGACCCTCGAACAATCAAGAAGATT
TGCAAGATCGACGAGCACATCACGCTGGCTTTTGCGGGCTTGACGGCCGA
CGCCCGCGTGCTTGTAAACAAGGCTCGCCTGGAATGCCAAAGCTACCGCC
TAACCTACGAGGATGCTCCCACGGTCGAGTACATTGCGCGGTACATCGCC
CGCACCCAACAAAAGTACACCCAGCGTGGCGGTGTGCGGCCATTCGGCGT
GTCATGTGTGATTGCTGGGACCAACCCTGATGGGACTGCCGTGCTTTACC
AGACGGACCCTGCAGGCACCTACTCGGCTTGGAAGGCCACGGCAGTGGGA
GGAAAGAACTCGTCCAATATGCAAGAGTACCTGGAGAAGCAGTGGGAAGA
TGCTCTGGGGGAGGAGGAGGCGATTCGACTGACGGTCAAGACGTTGTTGG
AGGTGGTGGATTCCGGGGCGAAGAACATGGAGGTGGCTATCATCAAAAAC
GGAGAGCCCATGCACATGCTTGATGAAGCCACGCTGGCGGCACTTGCGGC
TTCCATTGAGGCGGAGCAGGAGGAGGCTAAGAATAAGGCAGTCGCTGGGG
TGTCGGAGACCAAAGATTAGGATTTGGGGAGAAACAGTGTGGAGAAGAAG
TGGGTGGAAAGTGATTATGCTGGTAAAGGTGAAGGGAGAAGAGAGGGGCT
CCTCGCTTGACGGGATGTTGGATCATCGCAGAGGAAAAGAAAGAAACAAG
AGCATCAACAACAACAATGACAA
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protein sequence of NO06G00810.1

>NO06G00810.1-protein ID=NO06G00810.1-protein|Name=NO06G00810.1|organism=Nannochloropsis oceanica|type=polypeptide|length=254bp
MASRYDRAITVFSPDGHLFQVEYAIEAVKRGSSAVGVRGKNAVILGVERR
ATAKLQDPRTIKKICKIDEHITLAFAGLTADARVLVNKARLECQSYRLTY
EDAPTVEYIARYIARTQQKYTQRGGVRPFGVSCVIAGTNPDGTAVLYQTD
PAGTYSAWKATAVGGKNSSNMQEYLEKQWEDALGEEEAIRLTVKTLLEVV
DSGAKNMEVAIIKNGEPMHMLDEATLAALAASIEAEQEEAKNKAVAGVSE
TKD*
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mRNA from alignment at chr6:278443..279738+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G00810.1 ID=NO06G00810.1|Name=NO06G00810.1|organism=Nannochloropsis oceanica|type=mRNA|length=1296bp|location=Sequence derived from alignment at chr6:278443..279738+ (Nannochloropsis oceanica)
ACCATCACAGTCAGAGGCACCTTTCATAGCCGTTGGACATCGTCGAGCAG
CCGCAGCCATGGCCAGTCGGTAAGTTATGAGGGAAGGGAAGTGATGAAGA
CGACGACGACGAATTCCAGCGATGAAGAAACATTGTCCACCGTAAGACAT
ACAGCGTGGACCAGCGTGGAGGAAGTGGAACATTGTGTGCATAGTGGACG
AGAAAATCTGTGTCGGAGGCAGCGGACGCTTGCCGAACCATAAAGGAAGG
CTACAGGGACGCCAGAAGAAGTCCCTTCAACGGATCCTTATGTGCCCTTG
CTCTCTCCTGTGTTTCCCAATTCCTGTCGCACTCCCCTCCCTTCTTCTCA
CACAAGTTTTCTTCCCTTCTGCACCCTATCCATTTAAAATAGATACGACC
GCGCCATCACGGTCTTCTCGCCCGACGGGCACTTGTTCCAAGTAGAGTAT
GCCATCGAGGCTGTCAAGCGTGGCTCGTCGGCTGTTGGCGTGCGGGGCAA
GAACGCGGTTATTCTGGGAGTGGAGCGCAGGGCAACGGCCAAGCTGCAAG
ACCCTCGAACAATCAAGAAGATTTGCAAGATCGACGAGCACATCACGCTG
GCTTTTGCGGGCTTGACGGCCGACGCCCGCGTGCTTGTAAACAAGGCTCG
CCTGGAATGCCAAAGCTACCGCCTAACCTACGAGGATGCTCCCACGGTCG
AGTACATTGCGCGGTACATCGCCCGCACCCAACAAAAGTACACCCAGCGT
GGCGGTGTGCGGCCATTCGGCGTGTCATGTGTGATTGCTGGGACCAACCC
TGATGGGACTGCCGTGCTTTACCAGACGGACCCTGCAGGCACCTACTCGG
CTTGGAAGGCCACGGCAGTGGGAGGAAAGAACTCGTCCAATATGCAAGAG
TACCTGGAGAAGCAGTGGGAAGATGCTCTGGGGGAGGAGGAGGCGATTCG
ACTGACGGTCAAGACGTTGTTGGAGGTGGTGGATTCCGGGGCGAAGAACA
TGGAGGTGGCTATCATCAAAAACGGAGAGCCCATGCACATGCTTGATGAA
GCCACGCTGGCGGCACTTGCGGCTTCCATTGAGGCGGAGCAGGAGGAGGC
TAAGAATAAGGCAGTCGCTGGGGTGTCGGAGACCAAAGATTAGGATTTGG
GGAGAAACAGTGTGGAGAAGAAGTGGGTGGAAAGTGATTATGCTGGTAAA
GGTGAAGGGAGAAGAGAGGGGCTCCTCGCTTGACGGGATGTTGGATCATC
GCAGAGGAAAAGAAAGAAACAAGAGCATCAACAACAACAATGACAA
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Coding sequence (CDS) from alignment at chr6:278443..279738+

>NO06G00810.1 ID=NO06G00810.1|Name=NO06G00810.1|organism=Nannochloropsis oceanica|type=CDS|length=762bp|location=Sequence derived from alignment at chr6:278443..279738+ (Nannochloropsis oceanica)
ATGGCCAGTCGATACGACCGCGCCATCACGGTCTTCTCGCCCGACGGGCA
CTTGTTCCAAGTAGAGTATGCCATCGAGGCTGTCAAGCGTGGCTCGTCGG
CTGTTGGCGTGCGGGGCAAGAACGCGGTTATTCTGGGAGTGGAGCGCAGG
GCAACGGCCAAGCTGCAAGACCCTCGAACAATCAAGAAGATTTGCAAGAT
CGACGAGCACATCACGCTGGCTTTTGCGGGCTTGACGGCCGACGCCCGCG
TGCTTGTAAACAAGGCTCGCCTGGAATGCCAAAGCTACCGCCTAACCTAC
GAGGATGCTCCCACGGTCGAGTACATTGCGCGGTACATCGCCCGCACCCA
ACAAAAGTACACCCAGCGTGGCGGTGTGCGGCCATTCGGCGTGTCATGTG
TGATTGCTGGGACCAACCCTGATGGGACTGCCGTGCTTTACCAGACGGAC
CCTGCAGGCACCTACTCGGCTTGGAAGGCCACGGCAGTGGGAGGAAAGAA
CTCGTCCAATATGCAAGAGTACCTGGAGAAGCAGTGGGAAGATGCTCTGG
GGGAGGAGGAGGCGATTCGACTGACGGTCAAGACGTTGTTGGAGGTGGTG
GATTCCGGGGCGAAGAACATGGAGGTGGCTATCATCAAAAACGGAGAGCC
CATGCACATGCTTGATGAAGCCACGCTGGCGGCACTTGCGGCTTCCATTG
AGGCGGAGCAGGAGGAGGCTAAGAATAAGGCAGTCGCTGGGGTGTCGGAG
ACCAAAGATTAG
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Synonyms
Publications