NO06G00800.1, NO06G00800.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G00800.1
Unique NameNO06G00800.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1073
Alignment locationchr6:277279..278351 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:277279..278351 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO06G00800.1 vs.
Match: XP_004340242.1 (3oxo-5-alpha-steroid 4-dehydrogenase 1, putative [Acanthamoeba castellanii str. Neff]; ELR18222.1 3oxo-5-alpha-steroid 4-dehydrogenase 1, putative [Acanthamoeba castellanii str. Neff])

HSP 1 Score: 152.9 bits (385), Expect = 1.200e-33
Identity = 83/237 (35.02%), Postives = 130/237 (54.85%), Query Frame = 0
Query:    1 MDIDKELLHRSLAYALLALGIAAAIVLFVRPAPYGRYSEAMG--WGPLIDAKLAWLIMESPNVFVSAV-LWNDAGFATKSEANQVLLGLFVLHYVNRSFIYPARMAAGKPMPLCIMLMACSFSCCNDYLQTRYLTKFYIYPETWVSSPEYILGLLIFFAGFYMNLDSDYILRELRKKKCAKTKADRESPDSMRTRRQANEEPEAERNSVSQISSYCIPRGGLVEYISGANFFGEMVE 235
            + ID+E   +   Y ++  G+   +      APYGRYS   G  +GP + A+LAW++ E P+VFV  + L   +  +     N VL+GLF++HY+ RSF++P  +  GKP P  ++LMA  F   N Y+Q RY T++ +Y + WV  P +I+G+++FFAG ++N+ +D                       +R  R+  E            ++Y IPRGG+ EY+SGANFFGE++E
Sbjct:   15 LGIDEETFLQWAGYIMIGSGLVTFVASQATRAPYGRYSHEAGNMYGPPVPARLAWMLQECPSVFVPLICLLFGSEASLAGLVNCVLVGLFLVHYIQRSFVFPFLIRGGKPTPAVLVLMAFVFCLGNGYMQGRYHTRYAVYADDWVYDPRFIVGIVLFFAGMFINIQAD---------------------SILRNLRKPGE------------TAYKIPRGGMFEYVSGANFFGEILE 218          
The following BLAST results are available for this feature:
BLAST of NO06G00800.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_004340242.11.200e-3335.023oxo-5-alpha-steroid 4-dehydrogenase 1, putative [... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G00800NO06G00800Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G00800.1NO06G00800.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G00800.1.cds1NO06G00800.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G00800.1 ID=NO06G00800.1|Name=NO06G00800.1|organism=Nannochloropsis oceanica|type=mRNA|length=1073bp
TGACAACCTCCCCACCAACCTGCCTCTCCCCCCTCATTCCCCTCCCTCAC
AGGGGCCATGGATATAGACAAAGAACTACTGCACCGCTCCTTGGCATACG
CTTTACTAGCTTTGGGCATTGCTGCCGCTATTGTCCTGTTTGTACGTCCT
GCACCGTATGGACGCTATTCCGAAGCCATGGGCTGGGGGCCCTTGATCGA
CGCCAAGCTGGCATGGCTAATTATGGAGTCACCCAATGTTTTTGTCAGTG
CCGTGCTATGGAACGACGCCGGCTTCGCCACGAAAAGCGAAGCCAACCAA
GTATTGCTCGGACTGTTTGTCCTGCACTACGTGAACCGCTCCTTCATCTA
CCCTGCTCGGATGGCCGCGGGCAAGCCTATGCCGCTGTGCATTATGCTTA
TGGCTTGTAGCTTTAGTTGTTGTAATGACTACCTTCAGACGAGATATCTG
ACCAAATTTTACATTTACCCTGAAACTTGGGTCTCAAGTCCAGAATATAT
CCTTGGTCTTCTGATATTTTTCGCAGGGTTTTACATGAATCTCGATTCTG
ATTACATCCTGCGAGAGCTAAGGAAAAAGAAATGTGCAAAGACAAAGGCA
GACCGCGAGTCTCCCGATTCCATGCGCACTCGTCGACAAGCCAACGAGGA
ACCTGAAGCAGAGAGGAATTCGGTCTCACAGATATCCTCATATTGCATCC
CCCGCGGCGGGCTCGTTGAGTACATTTCCGGCGCCAACTTCTTTGGTGAG
ATGGTAGAGTAGATTGGCTTCGCTGTTGCCAGTGGTAGGTCCTTTCCGAA
TGTGATATTCTCCTTATTCACCATCCTCAACCAAGCACCGCGTGCGTGGC
ATCACCACATGTGGTATAAAAATCACTTTGGAAAAAAATACCCCGCCGAA
CGAAAGGCCTTGATACCCTTCATTTTTTGAACACTCCCCTCCTGTCCTCG
CATTCCATTCCTGTTCCTGACTTGCGTCTCAAAGACGCAAGATAGCAAAA
TTTTATGAAATTACATATCCAATAGTTAACATGAATCAAAAAATAAAGAA
GAAAAAGTAAATCATCGAATTCA
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protein sequence of NO06G00800.1

>NO06G00800.1-protein ID=NO06G00800.1-protein|Name=NO06G00800.1|organism=Nannochloropsis oceanica|type=polypeptide|length=235bp
MDIDKELLHRSLAYALLALGIAAAIVLFVRPAPYGRYSEAMGWGPLIDAK
LAWLIMESPNVFVSAVLWNDAGFATKSEANQVLLGLFVLHYVNRSFIYPA
RMAAGKPMPLCIMLMACSFSCCNDYLQTRYLTKFYIYPETWVSSPEYILG
LLIFFAGFYMNLDSDYILRELRKKKCAKTKADRESPDSMRTRRQANEEPE
AERNSVSQISSYCIPRGGLVEYISGANFFGEMVE*
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mRNA from alignment at chr6:277279..278351-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G00800.1 ID=NO06G00800.1|Name=NO06G00800.1|organism=Nannochloropsis oceanica|type=mRNA|length=1073bp|location=Sequence derived from alignment at chr6:277279..278351- (Nannochloropsis oceanica)
TGACAACCTCCCCACCAACCTGCCTCTCCCCCCTCATTCCCCTCCCTCAC AGGGGCCATGGATATAGACAAAGAACTACTGCACCGCTCCTTGGCATACG CTTTACTAGCTTTGGGCATTGCTGCCGCTATTGTCCTGTTTGTACGTCCT GCACCGTATGGACGCTATTCCGAAGCCATGGGCTGGGGGCCCTTGATCGA CGCCAAGCTGGCATGGCTAATTATGGAGTCACCCAATGTTTTTGTCAGTG CCGTGCTATGGAACGACGCCGGCTTCGCCACGAAAAGCGAAGCCAACCAA GTATTGCTCGGACTGTTTGTCCTGCACTACGTGAACCGCTCCTTCATCTA CCCTGCTCGGATGGCCGCGGGCAAGCCTATGCCGCTGTGCATTATGCTTA TGGCTTGTAGCTTTAGTTGTTGTAATGACTACCTTCAGACGAGATATCTG ACCAAATTTTACATTTACCCTGAAACTTGGGTCTCAAGTCCAGAATATAT CCTTGGTCTTCTGATATTTTTCGCAGGGTTTTACATGAATCTCGATTCTG ATTACATCCTGCGAGAGCTAAGGAAAAAGAAATGTGCAAAGACAAAGGCA GACCGCGAGTCTCCCGATTCCATGCGCACTCGTCGACAAGCCAACGAGGA ACCTGAAGCAGAGAGGAATTCGGTCTCACAGATATCCTCATATTGCATCC CCCGCGGCGGGCTCGTTGAGTACATTTCCGGCGCCAACTTCTTTGGTGAG ATGGTAGAGTAGATTGGCTTCGCTGTTGCCAGTGGTAGGTCCTTTCCGAA TGTGATATTCTCCTTATTCACCATCCTCAACCAAGCACCGCGTGCGTGGC ATCACCACATGTGGTATAAAAATCACTTTGGAAAAAAATACCCCGCCGAA CGAAAGGCCTTGATACCCTTCATTTTTTGAACACTCCCCTCCTGTCCTCG CATTCCATTCCTGTTCCTGACTTGCGTCTCAAAGACGCAAGATAGCAAAA TTTTATGAAATTACATATCCAATAGTTAACATGAATCAAAAAATAAAGAA GAAAAAGTAAATCATCGAATTCA
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Coding sequence (CDS) from alignment at chr6:277279..278351-

>NO06G00800.1 ID=NO06G00800.1|Name=NO06G00800.1|organism=Nannochloropsis oceanica|type=CDS|length=705bp|location=Sequence derived from alignment at chr6:277279..278351- (Nannochloropsis oceanica)
ATGGATATAGACAAAGAACTACTGCACCGCTCCTTGGCATACGCTTTACT
AGCTTTGGGCATTGCTGCCGCTATTGTCCTGTTTGTACGTCCTGCACCGT
ATGGACGCTATTCCGAAGCCATGGGCTGGGGGCCCTTGATCGACGCCAAG
CTGGCATGGCTAATTATGGAGTCACCCAATGTTTTTGTCAGTGCCGTGCT
ATGGAACGACGCCGGCTTCGCCACGAAAAGCGAAGCCAACCAAGTATTGC
TCGGACTGTTTGTCCTGCACTACGTGAACCGCTCCTTCATCTACCCTGCT
CGGATGGCCGCGGGCAAGCCTATGCCGCTGTGCATTATGCTTATGGCTTG
TAGCTTTAGTTGTTGTAATGACTACCTTCAGACGAGATATCTGACCAAAT
TTTACATTTACCCTGAAACTTGGGTCTCAAGTCCAGAATATATCCTTGGT
CTTCTGATATTTTTCGCAGGGTTTTACATGAATCTCGATTCTGATTACAT
CCTGCGAGAGCTAAGGAAAAAGAAATGTGCAAAGACAAAGGCAGACCGCG
AGTCTCCCGATTCCATGCGCACTCGTCGACAAGCCAACGAGGAACCTGAA
GCAGAGAGGAATTCGGTCTCACAGATATCCTCATATTGCATCCCCCGCGG
CGGGCTCGTTGAGTACATTTCCGGCGCCAACTTCTTTGGTGAGATGGTAG
AGTAG
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Synonyms
Publications