NO06G00780.1, NO06G00780.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G00780.1
Unique NameNO06G00780.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2566
Alignment locationchr6:274239..277271 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:274239..277271 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO06G00780.1 vs.
Match: EWM26102.1 (Zinc finger, HIT-type [Nannochloropsis gaditana])

HSP 1 Score: 266.9 bits (681), Expect = 4.700e-68
Identity = 140/188 (74.47%), Postives = 150/188 (79.79%), Query Frame = 0 
Query:    1 MSKRNRSAWDEAMVQAGAAASRAKKKSGKRTSGRTTVLSKAMGKVDEETRLEVRDARLEALEADNYVGNVEEEPDEEYVDSEDGNRPTAKREAKRRRNAAPKSGQASKLISSFRKKSVAQWVYEAGYNPSDGPNYLTAAAKPSRLPTRHFCSVCGYWGLYACTRCGMRYCCGKCAETHKETRCLKFAT 189
            MS   RSAWDEAM  AGA   + KKK  KR+SGR  VLSKAM  VDEETR EVRDARLEALEADNYV N  EE DE YVDSE+  RP  KREAKR+R+ A +   A+KLISSFRKK +AQWVYEAGY  S+GPNYLTAAA+PS LPTR FCSVCGYWGLY CTRCGMRYC  KCAETHKETRCLKFAT
Sbjct:    1 MSTNKRSAWDEAMGLAGAGIKQTKKKGAKRSSGRQAVLSKAMQVVDEETRREVRDARLEALEADNYVENAGEEMDEAYVDSEEEGRPKVKREAKRKRSMAQRQQMANKLISSFRKKPLAQWVYEAGYERSNGPNYLTAAAQPSSLPTRCFCSVCGYWGLYTCTRCGMRYCSSKCAETHKETRCLKFAT 188
The following BLAST results are available for this feature:
BLAST of NO06G00780.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26102.14.700e-6874.47Zinc finger, HIT-type [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G00780NO06G00780Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G00780.1NO06G00780.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G00780.1.cds1NO06G00780.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G00780.1.cds2NO06G00780.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G00780.1.cds3NO06G00780.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G00780.1.cds4NO06G00780.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G00780.1 ID=NO06G00780.1|Name=NO06G00780.1|organism=Nannochloropsis oceanica|type=mRNA|length=2566bp
TGGCCAAGACTCCCTGTGTGGTCTACTCTGTTTATTTTTGGTTTTCCTCC
GTGTCTACACATCCTCACTTTTTGAAAATCTTTTGCCCTAAATTATCTCT
CAAAATTCCATATCTCCCTCATCCCTGAGGACTGGCAGGCCGTCCATCCT
CTGATCGTTGTTTCGTGTTTCCTCCACGACTGGCCAGGGTTTGTCACACA
GATATAGCGGTTGCTCCGTTGGAGGCCGGGTGACTTCGGGATTTGCGCCC
AGCAAGGAGTAACGGATAAGGTTTTCAATCCTGGCCTCCACCTTATCGCG
GGGGGGGGGGCGCTTGTAAAGCAAACACGGCATGACAGCATGGATGTCGT
CGTCAATACGTGAAACGCTGTCGGTGCTGCTGGTGCTGCTGGTTCGACTG
ATGCTGCCACTCTGCGGGCAATTCCTTCCCTCTTCCTCTCCCGGACCCCC
ATTATCATCACTATCTATGGCCACAGCTTTCACTTCGTTGGTGGAAACAG
TTGATGGAATCGCCGACACCGCGCTCCAGGAAGTGCTATTGCTAGTGGCG
GCACTGTCGGGAATGCGTACGGTCGGAGGAATGTGTAAAGTTATGCCTAC
GCCGCCCGGAGTGGCATGAGGACGGAAAATGGTGCTATTAGAATCTGAGA
ACGGGCTTGGGAAAGCTGCCGCATCCACCGCGGGGGTAACGCCACTGGTG
GTGGATCCAAGTATGGGCGGTGGCGTTGCTGTAGCTGGCATACTCTTGGC
TGCTGGTGAGCCCACGGCCGATTCCTCCCCGAATCGCAGCCCCCCCATCC
GACGCTTAATCTCGTGCATGTCCCGGTCTTCGTGAAAAATGTAACGTTTC
TGGGAAGGCGAGGTGGGAGAACCGGGAGCGGAGGGGAAGAACGGTGGCTG
CTGATTCGTGTCCTGTGAAGGAAACATGATGATGGTTGCGGCTTGCCTCC
GATTACAAGGCTTGGTACTCACCATGCCAAGCCACCGGTGGGCTCAGAAT
TTCCTGTGGTATGTCTTTGGAGATGTTATTGTGTGAATGGAGCAATCTGG
GTCGTCAATTGCTTTGATGACGCGGGCTTCTGGTCCCTCGCATTTGTCGA
CCTCCTCTGTCGTAAACATCGCTTTCCTTTTCAACGCGAATCATCATTCA
CTCTTTCCTACCCCTCATTAGAAACCCCAGAGTGCTAAGATGTCCAAAAG
AAATCGCTCCGCATGGGATGAAGCCATGGTGCAGGCCGGGGCGGCTGCTT
CGCGGGCGAAAAAGAAGAGTGGCAAGCGTACCTCAGGACGAACCACGGTA
CTGAGCAAGGCCATGGGGAAAGTAGATGAGGAGACGCGGCTGGAAGTCCG
GGACGCGCGCTTGGAGGCTCTCGAGGCCGATAATTACGTGGGGAATGTAG
AAGAGGAGCCTGACGAGGAGTATGTAGATTCGGAGGATGGAAACCGCCCC
ACGGCCAAGCGCGAGGCCAAGCGGAGGCGGAACGCCGCGCCTAAGTCTGG
ACAGGCAAGTAAGCTCATCTCAAGTTTCCGGAAGAAAAGTGTGGCACAAT
GGGTTTACGAAGCGGGCTATAACCCCTCTGACGGCCCCAACTACCTGACA
GCGGCTGCTAAGCCTTCGCGCCTCCCAACCCGTCACTTTTGCTCGGTGTG
TGGATACTGGGGTCTGTATGCCTGCACCCGCTGTGGCATGCGCTACTGCT
GCGGAAAATGTGCCGAGACCCACAAAGAGACTCGGTGCCTCAAGTTTGCG
ACGGGATAGACCAACTGGAGAGAAAAGGAGATAGTGCGACGTTTTGAGCA
ATGAAGCGCGAAATCGCGCCACTTTGAGCAAAGCCCAAGCTATCTTGCGT
TCGGCCACCTCTATGCGCCATCCAGTCCGCTTTTTCTCGTCGTTCTGTCG
GACAACCCGCGCCCGAAACAAAGAGTGCAGATGCCTTCTGACTCACAGAA
AGAGCCGCCAGTTTGAGGTCGAATTGAAACGCTGGTATTAAGGCGAGGCA
AATGGCGAAGTAAAGGGCGACTATCGTGTTGATAGCGCCTGCGTCTCAGG
CATTCGTGCTTCCGACGGGAACTTCTTGGCTCAAACAGTCACGTATACCT
GCTGCTTTGTTATGTTGCGCACACACCTTAATTGTCTATGCTTCATACCA
TCAATCCTCTACAAAGGAAAACGATTAAAGGAGAAGCATGAGACCGGAAC
TAGATGGAAATGCCTCTTTGTGTTTTCTTTGGTCTCTTTTCTGGCCATAT
TTTGGGCAGCGCCTAATTCCTTCCCTCCTGTATTGTCGTGTTTAATCTCT
TCCCAGTCAACGCTCCTAGACTTCGTTACCATCTTTCTCTGCCCAGTCGC
ATTTAGCGTTCGTCCAATACATCAATTTCTTGATTCCTCGTAGCTTGGAA
CATATGGCACCATGACCATTTCATCCTTTTTCTTTTTCCTTCTTGAGAAG
TTGCTTTAGGATGAGTGGACAGCGGCAATAGGAGGGAGGGGCAAAGCGAA
GTGGTAAGACGGAGGAGTTTTACGTCACCAGCCACCTGATGAAGGCGCAG
CAAGCGATGGAGCAGG
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protein sequence of NO06G00780.1

>NO06G00780.1-protein ID=NO06G00780.1-protein|Name=NO06G00780.1|organism=Nannochloropsis oceanica|type=polypeptide|length=190bp
MSKRNRSAWDEAMVQAGAAASRAKKKSGKRTSGRTTVLSKAMGKVDEETR
LEVRDARLEALEADNYVGNVEEEPDEEYVDSEDGNRPTAKREAKRRRNAA
PKSGQASKLISSFRKKSVAQWVYEAGYNPSDGPNYLTAAAKPSRLPTRHF
CSVCGYWGLYACTRCGMRYCCGKCAETHKETRCLKFATG*
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mRNA from alignment at chr6:274239..277271-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G00780.1 ID=NO06G00780.1|Name=NO06G00780.1|organism=Nannochloropsis oceanica|type=mRNA|length=3033bp|location=Sequence derived from alignment at chr6:274239..277271- (Nannochloropsis oceanica)
TGGCCAAGACTCCCTGTGTGGTCTACTCTGTTTATTTTTGGTTTTCCTCC
GTGTCTACACATCCTCACTTTTTGAAAATCTTTTGCCCTAAATTATCTCT
CAAAATTCCATATCTCCCTCATCCCTGAGGACTGGCAGGCCGTCCATCCT
CTGATCGTTGTTTCGTGTTTCCTCCACGACTGGCCAGGGTTTGTCACACA
GATATAGCGGTTGCTCCGTTGGAGGCCGGGTGACTTCGGGATTTGCGCCC
AGCAAGGAGTAACGGATAAGGTTTTCAATCCTGGCCTCCACCTTATCGCG
GGGGGGGGGGCGCTTGTAAAGCAAACACGGCATGACAGCATGGATGTCGT
CGTCAATACGTGAAACGCTGTCGGTGCTGCTGGTGCTGCTGGTTCGACTG
ATGCTGCCACTCTGCGGGCAATTCCTTCCCTCTTCCTCTCCCGGACCCCC
ATTATCATCACTATCTATGGCCACAGCTTTCACTTCGTTGGTGGAAACAG
TTGATGGAATCGCCGACACCGCGCTCCAGGAAGTGCTATTGCTAGTGGCG
GCACTGTCGGGAATGCGTACGGTCGGAGGAATGTGTAAAGTTATGCCTAC
GCCGCCCGGAGTGGCATGAGGACGGAAAATGGTGCTATTAGAATCTGAGA
ACGGGCTTGGGAAAGCTGCCGCATCCACCGCGGGGGTAACGCCACTGGTG
GTGGATCCAAGTATGGGCGGTGGCGTTGCTGTAGCTGGCATACTCTTGGC
TGCTGGTGAGCCCACGGCCGATTCCTCCCCGAATCGCAGCCCCCCCATCC
GACGCTTAATCTCGTGCATGTCCCGGTCTTCGTGAAAAATGTAACGTTTC
TGGGAAGGCGAGGTGGGAGAACCGGGAGCGGAGGGGAAGAACGGTGGCTG
CTGATTCGTGTCCTGTGAAGGAAACATGATGATGGTTGCGGCTTGCCTCC
GATTACAAGGCTTGGTACTCACCATGCCAAGCCACCGGTGGGCTCAGAAT
TTCCTGTGGTATGTCTTTGGAGATGTTATTGTGTGAATGGAGCAATCTGG
GTCGTCAATTGCTTTGATGACGCGGGCTTCTGGTCCCTCGCATTTGTCGA
CCTCCTCTGTCGTAAACATCGCTTTCCTTTTCAACGCGAATCATCATTCA
CTCTTTCCTACCCCTCATTAGAAACCCCAGAGTGCTAAGATGTCCAAAAG
AAATCGCTCCGCATGGGATGAAGCCATGGTGCAGGCCGGGGCGGCTGCTT
CGCGGGCGAAAAAGAAGAGTGGCAAGCGTACCTCAGGACGAACCACGGTA
CTGAGCAAGGCCATGGGGAAAGTAGATGAGGAGACGCGGCTGGAAGTCCG
GGACGCGCGCTTGGAGGCTCTCGAGGCCGATAATTACGTGGGGAATGTAG
AAGAGGAGCCTGACGAGGAGTATGTAGATTCGGAGGTGAGGAGGCATGGT
GGGAGGCATGGTGGGAAAACGAGGGGAGAAGGTGGCTGGTGGGTGGTATA
TGGGTGGTTGAGTGAATGACGAGGGGGCTATGTGGCCGCTCATTCATTCA
CTCCATACTTCCCTTGACATATCCTATAGGATGGAAACCGCCCCACGGCC
AAGCGCGAGGCCAAGCGGAGGCGGAACGCCGCGCCTAAGTCTGGACAGGC
AAGTAAGCTCATGTACGTAACCGAGTGGTTGTGATGGGTTCACACGGAGT
CGTGGCACATTCAGGATATCGAAGAATTCATATTCATACATATGCATTCA
TCCACACGAAGCTCAAGTTTCCGGAAGAAAAGTGTGGCACAATGGGTTTA
CGAAGCGGTACGTCGATGTGTCCTCTCTGCGCCGCTGAGAGTGATAGTGT
TACTTATATCGCATGCATCCCACTTTAACACCTTGTTCTGCCATATATTT
GCGTCCTCCGTTAAACCCCCCCTTTTGGATCATTCTTAAGCCCGTTTTAC
TCCTCTCTCCGATCACTTTAACGCCCGATTTCAGTGAGCACATGTCCTTA
CTTTTTCGCTCTCTTCGCTTTTCTTGCCTAGGGCTATAACCCCTCTGACG
GCCCCAACTACCTGACAGCGGCTGCTAAGCCTTCGCGCCTCCCAACCCGT
CACTTTTGCTCGGTGTGTGGATACTGGGGTCTGTATGCCTGCACCCGCTG
TGGCATGCGCTACTGCTGCGGAAAATGTGCCGAGACCCACAAAGAGACTC
GGTGCCTCAAGTTTGCGACGGGATAGACCAACTGGAGAGAAAAGGAGATA
GTGCGACGTTTTGAGCAATGAAGCGCGAAATCGCGCCACTTTGAGCAAAG
CCCAAGCTATCTTGCGTTCGGCCACCTCTATGCGCCATCCAGTCCGCTTT
TTCTCGTCGTTCTGTCGGACAACCCGCGCCCGAAACAAAGAGTGCAGATG
CCTTCTGACTCACAGAAAGAGCCGCCAGTTTGAGGTCGAATTGAAACGCT
GGTATTAAGGCGAGGCAAATGGCGAAGTAAAGGGCGACTATCGTGTTGAT
AGCGCCTGCGTCTCAGGCATTCGTGCTTCCGACGGGAACTTCTTGGCTCA
AACAGTCACGTATACCTGCTGCTTTGTTATGTTGCGCACACACCTTAATT
GTCTATGCTTCATACCATCAATCCTCTACAAAGGAAAACGATTAAAGGAG
AAGCATGAGACCGGAACTAGATGGAAATGCCTCTTTGTGTTTTCTTTGGT
CTCTTTTCTGGCCATATTTTGGGCAGCGCCTAATTCCTTCCCTCCTGTAT
TGTCGTGTTTAATCTCTTCCCAGTCAACGCTCCTAGACTTCGTTACCATC
TTTCTCTGCCCAGTCGCATTTAGCGTTCGTCCAATACATCAATTTCTTGA
TTCCTCGTAGCTTGGAACATATGGCACCATGACCATTTCATCCTTTTTCT
TTTTCCTTCTTGAGAAGTTGCTTTAGGATGAGTGGACAGCGGCAATAGGA
GGGAGGGGCAAAGCGAAGTGGTAAGACGGAGGAGTTTTACGTCACCAGCC
ACCTGATGAAGGCGCAGCAAGCGATGGAGCAGG
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Coding sequence (CDS) from alignment at chr6:274239..277271-

>NO06G00780.1 ID=NO06G00780.1|Name=NO06G00780.1|organism=Nannochloropsis oceanica|type=CDS|length=570bp|location=Sequence derived from alignment at chr6:274239..277271- (Nannochloropsis oceanica)
ATGTCCAAAAGAAATCGCTCCGCATGGGATGAAGCCATGGTGCAGGCCGG
GGCGGCTGCTTCGCGGGCGAAAAAGAAGAGTGGCAAGCGTACCTCAGGAC
GAACCACGGTACTGAGCAAGGCCATGGGGAAAGTAGATGAGGAGACGCGG
CTGGAAGTCCGGGACGCGCGCTTGGAGGCTCTCGAGGCCGATAATTACGT
GGGGAATGTAGAAGAGGAGCCTGACGAGGAGTATGTAGATTCGGAGGATG
GAAACCGCCCCACGGCCAAGCGCGAGGCCAAGCGGAGGCGGAACGCCGCG
CCTAAGTCTGGACAGGCAAGTAAGCTCATCTCAAGTTTCCGGAAGAAAAG
TGTGGCACAATGGGTTTACGAAGCGGGCTATAACCCCTCTGACGGCCCCA
ACTACCTGACAGCGGCTGCTAAGCCTTCGCGCCTCCCAACCCGTCACTTT
TGCTCGGTGTGTGGATACTGGGGTCTGTATGCCTGCACCCGCTGTGGCAT
GCGCTACTGCTGCGGAAAATGTGCCGAGACCCACAAAGAGACTCGGTGCC
TCAAGTTTGCGACGGGATAG
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Synonyms
Publications