NO06G00750.1, NO06G00750.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G00750.1
Unique NameNO06G00750.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length855
Alignment locationchr6:263020..264162 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:263020..264162 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO06G00750.1 vs.
Match: EWM26116.1 (uncharacterized protein Naga_100014g49 [Nannochloropsis gaditana])

HSP 1 Score: 355.1 bits (910), Expect = 2.000e-94
Identity = 191/291 (65.64%), Postives = 224/291 (76.98%), Query Frame = 0 
Query:    1 MHRIAVAVARNVQPPHPSLSV----GVTTSRLSRSLSSTGAPPPAGPSP------SNNGEPHTPPTIEVSGKEAARLKRIAKIKEEIKRGYFYELGQVNRTKCKLFEADKELLPPSQARKVPSFDAESLLGVTHQFATLLTQAQSQVSLVALSFRDSGFRVLPDWIRPFQQEFARLPAMKVLQVSFEDKTWLKLLKFLLLNGQKSSIERERHGQSFLRFGSTEEIREGMGIDNRMVGYVFLVDKTGRMRWRGTGRPSEEEIGSMLKCAHELYEE--STRIVEADSGKLSNK 280
            MH + +   R VQPP   +       +  S ++R + ST       PS       S + +P  PP  ++S KEAARLK++ KIKEEI+RGYFYELGQ+NRTK KLFEADKEL+PP +A K PSF AESLLGVTHQF  LL Q  +QVSLV +SFRDSGFRVLPDWI+PF +EFA+ PAM VLQVSFED++WLKLLKFLL+NGQK+SIERERHGQSFLRFGST++IREGMGIDNRMVGYVFLVDK GRMRWRGTGRPS+EEIGSMLKCAHEL+EE  ST   +   GK+S +
Sbjct:    1 MHTLKIMRGR-VQPPLSLMQTFELSKIARSDITRGIGSTSTARLGKPSSQGAYKGSIDPKPDLPP--DISDKEAARLKKVEKIKEEIRRGYFYELGQINRTKSKLFEADKELVPPQKALKFPSFQAESLLGVTHQFGALLRQTNNQVSLVGVSFRDSGFRVLPDWIKPFLEEFAQTPAMTVLQVSFEDRSWLKLLKFLLVNGQKASIERERHGQSFLRFGSTQDIREGMGIDNRMVGYVFLVDKLGRMRWRGTGRPSDEEIGSMLKCAHELFEEQASTGKTKRLQGKISTR 288
The following BLAST results are available for this feature:
BLAST of NO06G00750.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26116.12.000e-9465.64uncharacterized protein Naga_100014g49 [Nannochlor... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G00750NO06G00750Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G00750.1NO06G00750.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G00750.1.cds1NO06G00750.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G00750.1.cds2NO06G00750.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G00750.1.cds3NO06G00750.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G00750.1.cds4NO06G00750.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G00750.1 ID=NO06G00750.1|Name=NO06G00750.1|organism=Nannochloropsis oceanica|type=mRNA|length=855bp
ATGCACAGGATTGCTGTGGCCGTGGCCCGCAACGTCCAACCTCCCCACCC
TTCCCTCTCTGTGGGGGTGACCACGAGCCGCCTGAGTCGCAGCCTGAGTA
GCACGGGCGCCCCGCCCCCCGCAGGCCCGAGCCCGTCCAATAATGGCGAA
CCGCATACACCTCCGACAATAGAAGTGTCGGGAAAGGAGGCGGCGCGGCT
GAAGAGGATTGCCAAAATCAAAGAGGAAATCAAGCGGGGGTATTTCTATG
AGCTGGGACAGGTGAATCGGACCAAATGCAAGCTCTTCGAGGCGGACAAG
GAGCTCCTGCCGCCTAGCCAAGCCCGCAAAGTCCCCTCCTTCGATGCCGA
GTCCTTGCTCGGGGTCACGCACCAGTTCGCGACGCTGCTCACCCAGGCCC
AGAGTCAAGTCTCGCTGGTAGCCTTGTCTTTCCGAGACTCGGGCTTCCGC
GTTCTGCCCGACTGGATAAGGCCGTTTCAACAGGAGTTTGCCAGGCTGCC
GGCCATGAAGGTCTTGCAGGTCTCCTTCGAGGACAAGACGTGGCTTAAGC
TGCTTAAGTTCCTGCTTCTCAACGGGCAAAAGAGCAGCATCGAGCGGGAG
CGGCACGGGCAGAGCTTTCTGCGCTTTGGGTCTACGGAGGAGATCCGCGA
AGGGATGGGCATTGACAACCGCATGGTGGGCTATGTCTTTCTGGTGGACA
AGACAGGCCGCATGCGCTGGAGGGGCACGGGCCGGCCTTCAGAGGAGGAG
ATCGGATCCATGCTTAAATGTGCCCACGAACTTTACGAGGAGAGCACTCG
TATCGTTGAGGCGGACAGTGGCAAGCTTTCAAACAAGCTCAACAAAAGGC
ATTAA
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protein sequence of NO06G00750.1

>NO06G00750.1-protein ID=NO06G00750.1-protein|Name=NO06G00750.1|organism=Nannochloropsis oceanica|type=polypeptide|length=285bp
MHRIAVAVARNVQPPHPSLSVGVTTSRLSRSLSSTGAPPPAGPSPSNNGE
PHTPPTIEVSGKEAARLKRIAKIKEEIKRGYFYELGQVNRTKCKLFEADK
ELLPPSQARKVPSFDAESLLGVTHQFATLLTQAQSQVSLVALSFRDSGFR
VLPDWIRPFQQEFARLPAMKVLQVSFEDKTWLKLLKFLLLNGQKSSIERE
RHGQSFLRFGSTEEIREGMGIDNRMVGYVFLVDKTGRMRWRGTGRPSEEE
IGSMLKCAHELYEESTRIVEADSGKLSNKLNKRH*
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mRNA from alignment at chr6:263020..264162-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G00750.1 ID=NO06G00750.1|Name=NO06G00750.1|organism=Nannochloropsis oceanica|type=mRNA|length=1143bp|location=Sequence derived from alignment at chr6:263020..264162- (Nannochloropsis oceanica)
ATGCACAGGATTGCTGTGGCCGTGGCCCGCAACGTCCAACCTCCCCACCC
TTCCCTCTCTGTGGGGGTGACCACGAGGTAAGAAAAGAAGCACATTACAC
GATTGAGAGCGTAGTGCTCTCTACAATCAGGGCACGGAGAAGGCATTCGA
CTTACCTTCATGCTCACATCTCCCTTCAAAGCCGCCTGAGTCGCAGCCTG
AGTAGCACGGGCGCCCCGCCCCCCGCAGGCCCGAGCCCGTCCAATAATGG
CGAACCGCATACACCTCCGACAATAGAAGTGTCGGGAAAGGAGGCGGCGC
GGCTGAAGAGGATTGCCAAAATCAAAGAGGAAATCAAGCGGGGGTATTTC
TATGAGCTGGGACAGGTGAATCGGACCAAATGCAAGCTCTTCGAGGCGGA
CAAGGAGCTCCTGCCGCCTAGCCAAGCCCGCAAAGTCCCCTCCTTCGATG
CCGAGTCCTTGCTCGGGGTCACGCACCAGTTCGCGACGCTGCTCACCCAG
GCCCAGAGTCAAGTCTCGCTGGTAGCCTTGTCTTTCCGAGACTCGGGCTT
CCGCGTTCTGCCCGACTGGATAAGGCCGTTTCAACAGGAGTTTGCCAGGC
TGCCGGCCATGAAGGTCTTGCAGGTCTCCTTCGAGGACAAGACGTGGCTT
AAGGTGAAGGATATTGGAAATAAAAATCGAGAACTAAAATCGTGGAACTG
ACATCTTCCTTCTCTGTCACGCGCTCTAACAGCTGCTTAAGTTCCTGCTT
CTCAACGGGCAAAAGAGCAGCATCGAGCGGGAGCGGCACGGGCAGAGCTT
TCTGCGCTTTGGGTCTACGGAGGAGATCCGCGAAGGGATGGGCATTGACA
ACCGCATGGTGGGCTATGTCTTTCTGGTGGACAAGACAGGCCGCATGCGC
TGGAGGTCCGTAGGTTGTGGATTAGGAGGTTGATTTTGCGTGTGTGTCCG
GGCGGGGAAGAATGTCAGCACACTTACTGAAGTTGCCTCTCTGACCACAC
AACTTTGTAGGGGCACGGGCCGGCCTTCAGAGGAGGAGATCGGATCCATG
CTTAAATGTGCCCACGAACTTTACGAGGAGAGCACTCGTATCGTTGAGGC
GGACAGTGGCAAGCTTTCAAACAAGCTCAACAAAAGGCATTAA
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Coding sequence (CDS) from alignment at chr6:263020..264162-

>NO06G00750.1 ID=NO06G00750.1|Name=NO06G00750.1|organism=Nannochloropsis oceanica|type=CDS|length=855bp|location=Sequence derived from alignment at chr6:263020..264162- (Nannochloropsis oceanica)
ATGCACAGGATTGCTGTGGCCGTGGCCCGCAACGTCCAACCTCCCCACCC
TTCCCTCTCTGTGGGGGTGACCACGAGCCGCCTGAGTCGCAGCCTGAGTA
GCACGGGCGCCCCGCCCCCCGCAGGCCCGAGCCCGTCCAATAATGGCGAA
CCGCATACACCTCCGACAATAGAAGTGTCGGGAAAGGAGGCGGCGCGGCT
GAAGAGGATTGCCAAAATCAAAGAGGAAATCAAGCGGGGGTATTTCTATG
AGCTGGGACAGGTGAATCGGACCAAATGCAAGCTCTTCGAGGCGGACAAG
GAGCTCCTGCCGCCTAGCCAAGCCCGCAAAGTCCCCTCCTTCGATGCCGA
GTCCTTGCTCGGGGTCACGCACCAGTTCGCGACGCTGCTCACCCAGGCCC
AGAGTCAAGTCTCGCTGGTAGCCTTGTCTTTCCGAGACTCGGGCTTCCGC
GTTCTGCCCGACTGGATAAGGCCGTTTCAACAGGAGTTTGCCAGGCTGCC
GGCCATGAAGGTCTTGCAGGTCTCCTTCGAGGACAAGACGTGGCTTAAGC
TGCTTAAGTTCCTGCTTCTCAACGGGCAAAAGAGCAGCATCGAGCGGGAG
CGGCACGGGCAGAGCTTTCTGCGCTTTGGGTCTACGGAGGAGATCCGCGA
AGGGATGGGCATTGACAACCGCATGGTGGGCTATGTCTTTCTGGTGGACA
AGACAGGCCGCATGCGCTGGAGGGGCACGGGCCGGCCTTCAGAGGAGGAG
ATCGGATCCATGCTTAAATGTGCCCACGAACTTTACGAGGAGAGCACTCG
TATCGTTGAGGCGGACAGTGGCAAGCTTTCAAACAAGCTCAACAAAAGGC
ATTAA
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Synonyms
Publications