NO06G00740.1, NO06G00740.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G00740.1
Unique NameNO06G00740.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length927
Alignment locationchr6:261961..262970 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:261961..262970 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO06G00740.1 vs.
Match: EWM26129.1 (peptidyl-prolyl cis-trans fkbp-type [Nannochloropsis gaditana])

HSP 1 Score: 169.1 bits (427), Expect = 1.100e-38
Identity = 95/137 (69.34%), Postives = 106/137 (77.37%), Query Frame = 0 
Query:    7 VATSLSEATRAGKRLRELVLRSSADLRCVNLMCEKVGDPCICRLARVLSLTPNLERLDLAKNGLKALPEEVFKLRNLRNLDLSHNVLTELPPSVLQLSHLRVLDVQGNPLMEEGTDNDNDDHEAETLKRVRHFIRER 144
            VA SLSEATRAGKRLREL+L SS DLRCVNLMCEKVG+PCICRLAR LS TP LERL L+ N L  LPEEVFKL++LR LDLS+N+L ELPPSVLQLS L VL V  N L +  T N   D   ++ K+VR FIRER
Sbjct:   15 VAKSLSEATRAGKRLRELILSSSEDLRCVNLMCEKVGEPCICRLARTLSQTPALERLVLSNNNLTVLPEEVFKLQSLRYLDLSNNLLRELPPSVLQLSSLEVLSVDENLLADSSTGNIVVD---DSKKQVRQFIRER 148
The following BLAST results are available for this feature:
BLAST of NO06G00740.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26129.11.100e-3869.34peptidyl-prolyl cis-trans fkbp-type [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G00740NO06G00740Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G00740.1NO06G00740.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G00740.1.cds1NO06G00740.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G00740.1.cds2NO06G00740.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G00740.1 ID=NO06G00740.1|Name=NO06G00740.1|organism=Nannochloropsis oceanica|type=mRNA|length=927bp
GGTATCTGTAGTTGTGTGCGGTGGGAGGGGTGCGTAAGATTTTGTGTCTG
AGTGCCGGTGGTGTGAGAACGGCAGAAAGGCGAAGGCAGGGAGCAGAGAG
TGAGGGAGGCGAAAAGGGCCTCGGTTTGCTCGCAGCCATCTAATGCATCC
CTGCCTTCCCACACCGGCTGTCCATGATACGTTTTCCTCACCACAACGAC
CAGGTACGTGCAAGGATTTGCAGCTGGTTGTTACGTGTGCTGTACTGCCA
TCATGGCCCTGTGCTTCTCTTTCTTGTCGCTGCCCACCGTCCACACAAGT
ATGCTTGGGGGAAATAGTTGACGTTTTGCACCTTCATCATCATCACCACT
TCATTTTTTCTGTGCATGGAGTCCTGCTACAATACATGCCCACGCTCAAT
TTAACAGGCTGGTCATCTGTGCCTTGCGATGCGCGTAAGATAACGCTAGA
ATGTCGACGACCAAGTTCGTTGCTACGAGTCTGTCAGAGGCCACGCGGGC
GGGGAAGCGGTTGCGTGAACTGGTGCTGCGTTCGAGTGCGGACCTGAGGT
GTGTGAACCTCATGTGCGAAAAGGTGGGGGACCCATGCATCTGTCGCCTG
GCCCGGGTCCTCTCCCTTACGCCCAACCTGGAGCGCCTCGACCTAGCCAA
GAACGGGTTGAAGGCATTGCCAGAGGAGGTATTCAAGCTGCGAAATCTTC
GAAATCTTGACCTGTCACACAATGTACTGACAGAACTGCCGCCGTCCGTC
CTCCAACTCTCCCATTTGCGCGTGCTGGACGTGCAAGGGAACCCGTTGAT
GGAGGAGGGTACGGACAACGACAACGACGACCACGAGGCCGAGACATTGA
AGCGCGTGCGGCACTTCATTCGGGAGAGAATACCAACGAGGAGTATGTAG
TGCAACTTCAACAAAGTGAATACTTTT
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protein sequence of NO06G00740.1

>NO06G00740.1-protein ID=NO06G00740.1-protein|Name=NO06G00740.1|organism=Nannochloropsis oceanica|type=polypeptide|length=150bp
MSTTKFVATSLSEATRAGKRLRELVLRSSADLRCVNLMCEKVGDPCICRL
ARVLSLTPNLERLDLAKNGLKALPEEVFKLRNLRNLDLSHNVLTELPPSV
LQLSHLRVLDVQGNPLMEEGTDNDNDDHEAETLKRVRHFIRERIPTRSM*
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mRNA from alignment at chr6:261961..262970+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G00740.1 ID=NO06G00740.1|Name=NO06G00740.1|organism=Nannochloropsis oceanica|type=mRNA|length=1010bp|location=Sequence derived from alignment at chr6:261961..262970+ (Nannochloropsis oceanica)
GGTATCTGTAGTTGTGTGCGGTGGGAGGGGTGCGTAAGATTTTGTGTCTG
AGTGCCGGTGGTGTGAGAACGGCAGAAAGGCGAAGGCAGGGAGCAGAGAG
TGAGGGAGGCGAAAAGGGCCTCGGTTTGCTCGCAGCCATCTAATGCATCC
CTGCCTTCCCACACCGGCTGTCCATGATACGTTTTCCTCACCACAACGAC
CAGGTACGTGCAAGGATTTGCAGCTGGTTGTTACGTGTGCTGTACTGCCA
TCATGGCCCTGTGCTTCTCTTTCTTGTCGCTGCCCACCGTCCACACAAGT
ATGCTTGGGGGAAATAGTTGACGTTTTGCACCTTCATCATCATCACCACT
TCATTTTTTCTGTGCATGGAGTCCTGCTACAATACATGCCCACGCTCAAT
TTAACAGGCTGGTCATCTGTGCCTTGCGATGCGCGTAAGATAACGCTAGA
ATGTCGACGACCAAGGTAAAGTAACCATATTTCTGCCCCTCTCATATCCA
CTTCTCCCGTCTCCTTCACCAGCCTCGACACACCCCTACTATGAGCAGTT
CGTTGCTACGAGTCTGTCAGAGGCCACGCGGGCGGGGAAGCGGTTGCGTG
AACTGGTGCTGCGTTCGAGTGCGGACCTGAGGTGTGTGAACCTCATGTGC
GAAAAGGTGGGGGACCCATGCATCTGTCGCCTGGCCCGGGTCCTCTCCCT
TACGCCCAACCTGGAGCGCCTCGACCTAGCCAAGAACGGGTTGAAGGCAT
TGCCAGAGGAGGTATTCAAGCTGCGAAATCTTCGAAATCTTGACCTGTCA
CACAATGTACTGACAGAACTGCCGCCGTCCGTCCTCCAACTCTCCCATTT
GCGCGTGCTGGACGTGCAAGGGAACCCGTTGATGGAGGAGGGTACGGACA
ACGACAACGACGACCACGAGGCCGAGACATTGAAGCGCGTGCGGCACTTC
ATTCGGGAGAGAATACCAACGAGGAGTATGTAGTGCAACTTCAACAAAGT
GAATACTTTT
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Coding sequence (CDS) from alignment at chr6:261961..262970+

>NO06G00740.1 ID=NO06G00740.1|Name=NO06G00740.1|organism=Nannochloropsis oceanica|type=CDS|length=450bp|location=Sequence derived from alignment at chr6:261961..262970+ (Nannochloropsis oceanica)
ATGTCGACGACCAAGTTCGTTGCTACGAGTCTGTCAGAGGCCACGCGGGC
GGGGAAGCGGTTGCGTGAACTGGTGCTGCGTTCGAGTGCGGACCTGAGGT
GTGTGAACCTCATGTGCGAAAAGGTGGGGGACCCATGCATCTGTCGCCTG
GCCCGGGTCCTCTCCCTTACGCCCAACCTGGAGCGCCTCGACCTAGCCAA
GAACGGGTTGAAGGCATTGCCAGAGGAGGTATTCAAGCTGCGAAATCTTC
GAAATCTTGACCTGTCACACAATGTACTGACAGAACTGCCGCCGTCCGTC
CTCCAACTCTCCCATTTGCGCGTGCTGGACGTGCAAGGGAACCCGTTGAT
GGAGGAGGGTACGGACAACGACAACGACGACCACGAGGCCGAGACATTGA
AGCGCGTGCGGCACTTCATTCGGGAGAGAATACCAACGAGGAGTATGTAG
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Synonyms
Publications