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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr6 | genome | chr6:259106..260965 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO06G00720.1 vs.
Match: EWM26128.1 (Heat shock protein DnaJ [Nannochloropsis gaditana]) HSP 1 Score: 893.3 bits (2307), Expect = 4.400e-256 Identity = 465/617 (75.36%), Postives = 527/617 (85.41%), Query Frame = 0
Query: 3 DEEQEDATDAAARLLQSNLRRNQQRELYSFLNVQKSASPEEIRAAYLRVASSYHPDRVTPSLRADSEAQFLKVDRAYKVLTDPLMRQAYDHLGERGLRLLQAVPAHELLPMRFPLEVAYILEELSAEEMQYAALSAQNSSGTITVHMEVPRPLQTPRLKQLSVDQQVEVSLTGATSLFGGLYVMNRKAVGIGMGYIGTRLQLGKGTWVSGTYVLSQKRKLTIETSRDLSRAVNVRVSLSGAESGNVGLKLASSRRVSASLMGTADLAVGTCEDEALAFGLTSSNGKRELTGRLRVSDSEVALKGIYENRISNAFQVKCVGKVGTRGLECMLGATRNLSSLTAVNFGLSVALDGVTVSIKARKGRQHIYIPIKISARLDPWSVLVGSVLNAGLNAGLVLLVRPFEKARVQRQLRMLEKELVEKQARERRNAAAQVRLMAEAAQRKAAAEKSAMKGLGGLVILVGRYGTSALPHQRPPDSDWYLPSREQDHNLDMASALDVRIALQFFVNKSRLYLPAGSKAGMLGFYDVAANPTWFLHASTSADDYDAGHSKSTAATFHAPIRPPHHRRKIRRDRPRLYIRYSYLGKVYEMSVDDIESVDLPPLDSSHTCLGLEGDVK 620
DE DA+DAAARLLQ LR + QRELY LNV SAS EEIRAAYLRVASSYHPDRV P LR DSEAQFLK+DRAYKVLTDPLMRQAYD GERGLRLLQAVP HE+LP+RFP EVAYILE+LSAEEMQY+ALSAQ SSGT+TVHME+PRPLQ PRLKQLSV+QQVEV LTGATSLF G++V+NRKAVG+GMGY+G RLQL K TWVS TY+LSQKRKLTIE+SR+LS AVNVR SLS AE+GN+GLKLASSRR+SASL GT DL G+ EDEA+ FGLTSSNGKRELTGRLRVSDSEVA+KGIYENRISNA VKCVGK+GTRG+EC+LGATRNLSSL +N GL V +DGVTVSI+ARKGR H+++PIKIS LDPWSVLVGS+L+AGLNAGLVLLVRPFEKAR+QRQLRMLE+E+ E+QAR RRNAAAQVRLMAEA+ RK EK AMKGLGGLVIL RYGTS++P + PPD +WYL SR+++ LD A+ALDVR+ LQFFVNKSRL LP GSKAGMLGFYDV+ANPTW STS+D + KS+A F AP+RPP + R RLY+RYSYLGKVYE+SVDDIE ++LPP+D+SHTCLG EG V+
Sbjct: 4 DERDGDASDAAARLLQRKLRASNQRELYKALNVPPSASSEEIRAAYLRVASSYHPDRVDPPLREDSEAQFLKIDRAYKVLTDPLMRQAYDKFGERGLRLLQAVPQHEMLPLRFPCEVAYILEDLSAEEMQYSALSAQGSSGTVTVHMEIPRPLQPPRLKQLSVEQQVEVPLTGATSLFAGIFVINRKAVGMGMGYVGARLQLSKATWVSCTYLLSQKRKLTIESSRELSGAVNVRASLSCAENGNLGLKLASSRRMSASLTGTVDLTAGSGEDEAIGFGLTSSNGKRELTGRLRVSDSEVAVKGIYENRISNAVLVKCVGKLGTRGVECLLGATRNLSSLATINLGLGVGMDGVTVSIQARKGRHHVHVPIKISPHLDPWSVLVGSLLSAGLNAGLVLLVRPFEKARIQRQLRMLEREVSERQARGRRNAAAQVRLMAEASIRKTQVEKRAMKGLGGLVILEARYGTSSMPQKAPPDPEWYLLSRDKEQALDRATALDVRVPLQFFVNKSRLQLPPGSKAGMLGFYDVSANPTWLYDPSTSSDGSEP--DKSSATAFRAPLRPPRPPEAKTKARTRLYVRYSYLGKVYEVSVDDIEPLELPPMDTSHTCLGTEGQVR 618
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO06G00720.1 ID=NO06G00720.1|Name=NO06G00720.1|organism=Nannochloropsis oceanica|type=mRNA|length=1860bp ATGAAGGATGAGGAGCAAGAAGACGCCACCGACGCCGCCGCTCGGCTCCT ACAGAGCAACTTGCGGAGAAATCAGCAACGCGAGCTGTACTCATTTTTGA ACGTGCAAAAATCGGCCTCACCCGAAGAGATTCGGGCTGCCTATTTGCGC GTCGCCTCGTCGTACCACCCAGATCGCGTGACACCGTCCCTGCGGGCGGA CTCCGAAGCCCAGTTCCTCAAGGTGGATAGGGCATATAAAGTGCTTACTG ACCCGTTGATGCGGCAGGCATATGATCACCTGGGAGAGCGAGGACTGCGG CTGCTCCAGGCCGTCCCCGCCCATGAGCTCCTGCCGATGCGCTTTCCTTT GGAAGTGGCGTACATCTTGGAGGAGCTGTCGGCAGAAGAGATGCAGTACG CGGCCTTGAGTGCTCAGAATTCGTCGGGCACCATCACTGTGCACATGGAG GTGCCCCGGCCTTTGCAGACGCCCCGCCTCAAGCAGCTCTCGGTGGATCA GCAGGTGGAAGTATCCTTGACGGGCGCCACCAGCCTCTTCGGCGGGCTGT ACGTGATGAATCGGAAGGCCGTGGGGATTGGCATGGGGTACATCGGTACA CGTCTGCAACTGGGTAAGGGAACCTGGGTTTCCGGTACGTACGTCCTCAG CCAAAAGCGGAAGCTGACAATCGAAACCTCGCGGGATCTCTCGCGCGCCG TCAACGTGCGGGTGTCGTTGTCGGGCGCCGAATCGGGAAACGTTGGTCTC AAGCTAGCCTCCTCTCGGCGTGTAAGTGCCAGCTTGATGGGAACTGCGGA CCTGGCAGTGGGCACATGTGAGGACGAGGCGCTGGCATTTGGACTCACAT CCTCGAACGGGAAGCGTGAGCTGACAGGCCGCCTGCGCGTGTCGGACTCG GAGGTGGCGCTGAAGGGCATTTATGAAAACCGCATCTCCAACGCCTTTCA GGTCAAATGTGTCGGCAAAGTGGGCACCCGTGGCCTGGAGTGCATGTTGG GAGCCACACGCAATTTGTCCAGCCTGACGGCCGTGAACTTCGGGCTGAGC GTGGCATTGGACGGGGTTACGGTCAGCATCAAGGCCCGCAAAGGCCGCCA GCATATCTACATCCCCATCAAGATTTCTGCACGCTTGGACCCCTGGTCTG TCTTGGTAGGCAGCGTCTTGAACGCCGGTCTCAATGCAGGACTGGTGCTG CTGGTCCGGCCCTTCGAGAAGGCCCGCGTCCAGCGGCAGCTGCGAATGCT GGAGAAGGAGCTCGTAGAGAAGCAAGCCCGTGAGAGGCGCAACGCAGCGG CCCAGGTCAGGCTAATGGCTGAGGCGGCACAGCGCAAGGCTGCGGCAGAG AAGTCGGCGATGAAGGGCCTTGGTGGACTGGTTATCCTAGTGGGTCGCTA TGGCACGTCAGCCTTGCCGCACCAGCGGCCACCGGACAGCGACTGGTACC TACCCAGCCGCGAGCAAGACCACAATCTGGACATGGCCTCCGCGTTGGAC GTGCGTATCGCGCTCCAGTTCTTCGTGAATAAGTCCCGCCTGTATCTGCC GGCGGGCAGCAAGGCGGGTATGCTGGGGTTTTATGACGTGGCCGCCAATC CCACCTGGTTTCTTCATGCCTCCACTTCGGCCGACGACTACGACGCCGGC CACAGCAAGAGCACGGCGGCAACCTTTCACGCGCCCATCCGCCCCCCGCA CCACAGGCGCAAAATCCGGAGGGACCGGCCACGTTTGTACATTCGGTACA GCTACCTGGGCAAAGTTTACGAAATGTCCGTCGACGACATTGAGAGCGTG GATCTGCCGCCTCTCGACTCCAGTCACACCTGTCTGGGCCTGGAGGGCGA TGTCAAGTAG back to topprotein sequence of NO06G00720.1 >NO06G00720.1-protein ID=NO06G00720.1-protein|Name=NO06G00720.1|organism=Nannochloropsis oceanica|type=polypeptide|length=620bp MKDEEQEDATDAAARLLQSNLRRNQQRELYSFLNVQKSASPEEIRAAYLR VASSYHPDRVTPSLRADSEAQFLKVDRAYKVLTDPLMRQAYDHLGERGLR LLQAVPAHELLPMRFPLEVAYILEELSAEEMQYAALSAQNSSGTITVHME VPRPLQTPRLKQLSVDQQVEVSLTGATSLFGGLYVMNRKAVGIGMGYIGT RLQLGKGTWVSGTYVLSQKRKLTIETSRDLSRAVNVRVSLSGAESGNVGL KLASSRRVSASLMGTADLAVGTCEDEALAFGLTSSNGKRELTGRLRVSDS EVALKGIYENRISNAFQVKCVGKVGTRGLECMLGATRNLSSLTAVNFGLS VALDGVTVSIKARKGRQHIYIPIKISARLDPWSVLVGSVLNAGLNAGLVL LVRPFEKARVQRQLRMLEKELVEKQARERRNAAAQVRLMAEAAQRKAAAE KSAMKGLGGLVILVGRYGTSALPHQRPPDSDWYLPSREQDHNLDMASALD VRIALQFFVNKSRLYLPAGSKAGMLGFYDVAANPTWFLHASTSADDYDAG HSKSTAATFHAPIRPPHHRRKIRRDRPRLYIRYSYLGKVYEMSVDDIESV DLPPLDSSHTCLGLEGDVK* back to topmRNA from alignment at chr6:259106..260965+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO06G00720.1 ID=NO06G00720.1|Name=NO06G00720.1|organism=Nannochloropsis oceanica|type=mRNA|length=1860bp|location=Sequence derived from alignment at chr6:259106..260965+ (Nannochloropsis oceanica) ATGAAGGATGAGGAGCAAGAAGACGCCACCGACGCCGCCGCTCGGCTCCT
ACAGAGCAACTTGCGGAGAAATCAGCAACGCGAGCTGTACTCATTTTTGA
ACGTGCAAAAATCGGCCTCACCCGAAGAGATTCGGGCTGCCTATTTGCGC
GTCGCCTCGTCGTACCACCCAGATCGCGTGACACCGTCCCTGCGGGCGGA
CTCCGAAGCCCAGTTCCTCAAGGTGGATAGGGCATATAAAGTGCTTACTG
ACCCGTTGATGCGGCAGGCATATGATCACCTGGGAGAGCGAGGACTGCGG
CTGCTCCAGGCCGTCCCCGCCCATGAGCTCCTGCCGATGCGCTTTCCTTT
GGAAGTGGCGTACATCTTGGAGGAGCTGTCGGCAGAAGAGATGCAGTACG
CGGCCTTGAGTGCTCAGAATTCGTCGGGCACCATCACTGTGCACATGGAG
GTGCCCCGGCCTTTGCAGACGCCCCGCCTCAAGCAGCTCTCGGTGGATCA
GCAGGTGGAAGTATCCTTGACGGGCGCCACCAGCCTCTTCGGCGGGCTGT
ACGTGATGAATCGGAAGGCCGTGGGGATTGGCATGGGGTACATCGGTACA
CGTCTGCAACTGGGTAAGGGAACCTGGGTTTCCGGTACGTACGTCCTCAG
CCAAAAGCGGAAGCTGACAATCGAAACCTCGCGGGATCTCTCGCGCGCCG
TCAACGTGCGGGTGTCGTTGTCGGGCGCCGAATCGGGAAACGTTGGTCTC
AAGCTAGCCTCCTCTCGGCGTGTAAGTGCCAGCTTGATGGGAACTGCGGA
CCTGGCAGTGGGCACATGTGAGGACGAGGCGCTGGCATTTGGACTCACAT
CCTCGAACGGGAAGCGTGAGCTGACAGGCCGCCTGCGCGTGTCGGACTCG
GAGGTGGCGCTGAAGGGCATTTATGAAAACCGCATCTCCAACGCCTTTCA
GGTCAAATGTGTCGGCAAAGTGGGCACCCGTGGCCTGGAGTGCATGTTGG
GAGCCACACGCAATTTGTCCAGCCTGACGGCCGTGAACTTCGGGCTGAGC
GTGGCATTGGACGGGGTTACGGTCAGCATCAAGGCCCGCAAAGGCCGCCA
GCATATCTACATCCCCATCAAGATTTCTGCACGCTTGGACCCCTGGTCTG
TCTTGGTAGGCAGCGTCTTGAACGCCGGTCTCAATGCAGGACTGGTGCTG
CTGGTCCGGCCCTTCGAGAAGGCCCGCGTCCAGCGGCAGCTGCGAATGCT
GGAGAAGGAGCTCGTAGAGAAGCAAGCCCGTGAGAGGCGCAACGCAGCGG
CCCAGGTCAGGCTAATGGCTGAGGCGGCACAGCGCAAGGCTGCGGCAGAG
AAGTCGGCGATGAAGGGCCTTGGTGGACTGGTTATCCTAGTGGGTCGCTA
TGGCACGTCAGCCTTGCCGCACCAGCGGCCACCGGACAGCGACTGGTACC
TACCCAGCCGCGAGCAAGACCACAATCTGGACATGGCCTCCGCGTTGGAC
GTGCGTATCGCGCTCCAGTTCTTCGTGAATAAGTCCCGCCTGTATCTGCC
GGCGGGCAGCAAGGCGGGTATGCTGGGGTTTTATGACGTGGCCGCCAATC
CCACCTGGTTTCTTCATGCCTCCACTTCGGCCGACGACTACGACGCCGGC
CACAGCAAGAGCACGGCGGCAACCTTTCACGCGCCCATCCGCCCCCCGCA
CCACAGGCGCAAAATCCGGAGGGACCGGCCACGTTTGTACATTCGGTACA
GCTACCTGGGCAAAGTTTACGAAATGTCCGTCGACGACATTGAGAGCGTG
GATCTGCCGCCTCTCGACTCCAGTCACACCTGTCTGGGCCTGGAGGGCGA
TGTCAAGTAG back to topCoding sequence (CDS) from alignment at chr6:259106..260965+ >NO06G00720.1 ID=NO06G00720.1|Name=NO06G00720.1|organism=Nannochloropsis oceanica|type=CDS|length=1860bp|location=Sequence derived from alignment at chr6:259106..260965+ (Nannochloropsis oceanica) ATGAAGGATGAGGAGCAAGAAGACGCCACCGACGCCGCCGCTCGGCTCCT ACAGAGCAACTTGCGGAGAAATCAGCAACGCGAGCTGTACTCATTTTTGA ACGTGCAAAAATCGGCCTCACCCGAAGAGATTCGGGCTGCCTATTTGCGC GTCGCCTCGTCGTACCACCCAGATCGCGTGACACCGTCCCTGCGGGCGGA CTCCGAAGCCCAGTTCCTCAAGGTGGATAGGGCATATAAAGTGCTTACTG ACCCGTTGATGCGGCAGGCATATGATCACCTGGGAGAGCGAGGACTGCGG CTGCTCCAGGCCGTCCCCGCCCATGAGCTCCTGCCGATGCGCTTTCCTTT GGAAGTGGCGTACATCTTGGAGGAGCTGTCGGCAGAAGAGATGCAGTACG CGGCCTTGAGTGCTCAGAATTCGTCGGGCACCATCACTGTGCACATGGAG GTGCCCCGGCCTTTGCAGACGCCCCGCCTCAAGCAGCTCTCGGTGGATCA GCAGGTGGAAGTATCCTTGACGGGCGCCACCAGCCTCTTCGGCGGGCTGT ACGTGATGAATCGGAAGGCCGTGGGGATTGGCATGGGGTACATCGGTACA CGTCTGCAACTGGGTAAGGGAACCTGGGTTTCCGGTACGTACGTCCTCAG CCAAAAGCGGAAGCTGACAATCGAAACCTCGCGGGATCTCTCGCGCGCCG TCAACGTGCGGGTGTCGTTGTCGGGCGCCGAATCGGGAAACGTTGGTCTC AAGCTAGCCTCCTCTCGGCGTGTAAGTGCCAGCTTGATGGGAACTGCGGA CCTGGCAGTGGGCACATGTGAGGACGAGGCGCTGGCATTTGGACTCACAT CCTCGAACGGGAAGCGTGAGCTGACAGGCCGCCTGCGCGTGTCGGACTCG GAGGTGGCGCTGAAGGGCATTTATGAAAACCGCATCTCCAACGCCTTTCA GGTCAAATGTGTCGGCAAAGTGGGCACCCGTGGCCTGGAGTGCATGTTGG GAGCCACACGCAATTTGTCCAGCCTGACGGCCGTGAACTTCGGGCTGAGC GTGGCATTGGACGGGGTTACGGTCAGCATCAAGGCCCGCAAAGGCCGCCA GCATATCTACATCCCCATCAAGATTTCTGCACGCTTGGACCCCTGGTCTG TCTTGGTAGGCAGCGTCTTGAACGCCGGTCTCAATGCAGGACTGGTGCTG CTGGTCCGGCCCTTCGAGAAGGCCCGCGTCCAGCGGCAGCTGCGAATGCT GGAGAAGGAGCTCGTAGAGAAGCAAGCCCGTGAGAGGCGCAACGCAGCGG CCCAGGTCAGGCTAATGGCTGAGGCGGCACAGCGCAAGGCTGCGGCAGAG AAGTCGGCGATGAAGGGCCTTGGTGGACTGGTTATCCTAGTGGGTCGCTA TGGCACGTCAGCCTTGCCGCACCAGCGGCCACCGGACAGCGACTGGTACC TACCCAGCCGCGAGCAAGACCACAATCTGGACATGGCCTCCGCGTTGGAC GTGCGTATCGCGCTCCAGTTCTTCGTGAATAAGTCCCGCCTGTATCTGCC GGCGGGCAGCAAGGCGGGTATGCTGGGGTTTTATGACGTGGCCGCCAATC CCACCTGGTTTCTTCATGCCTCCACTTCGGCCGACGACTACGACGCCGGC CACAGCAAGAGCACGGCGGCAACCTTTCACGCGCCCATCCGCCCCCCGCA CCACAGGCGCAAAATCCGGAGGGACCGGCCACGTTTGTACATTCGGTACA GCTACCTGGGCAAAGTTTACGAAATGTCCGTCGACGACATTGAGAGCGTG GATCTGCCGCCTCTCGACTCCAGTCACACCTGTCTGGGCCTGGAGGGCGA TGTCAAGTAG back to top
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