NO06G00720.1, NO06G00720.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G00720.1
Unique NameNO06G00720.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1860
Alignment locationchr6:259106..260965 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:259106..260965 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO06G00720.1 vs.
Match: EWM26128.1 (Heat shock protein DnaJ [Nannochloropsis gaditana])

HSP 1 Score: 893.3 bits (2307), Expect = 4.400e-256
Identity = 465/617 (75.36%), Postives = 527/617 (85.41%), Query Frame = 0
Query:    3 DEEQEDATDAAARLLQSNLRRNQQRELYSFLNVQKSASPEEIRAAYLRVASSYHPDRVTPSLRADSEAQFLKVDRAYKVLTDPLMRQAYDHLGERGLRLLQAVPAHELLPMRFPLEVAYILEELSAEEMQYAALSAQNSSGTITVHMEVPRPLQTPRLKQLSVDQQVEVSLTGATSLFGGLYVMNRKAVGIGMGYIGTRLQLGKGTWVSGTYVLSQKRKLTIETSRDLSRAVNVRVSLSGAESGNVGLKLASSRRVSASLMGTADLAVGTCEDEALAFGLTSSNGKRELTGRLRVSDSEVALKGIYENRISNAFQVKCVGKVGTRGLECMLGATRNLSSLTAVNFGLSVALDGVTVSIKARKGRQHIYIPIKISARLDPWSVLVGSVLNAGLNAGLVLLVRPFEKARVQRQLRMLEKELVEKQARERRNAAAQVRLMAEAAQRKAAAEKSAMKGLGGLVILVGRYGTSALPHQRPPDSDWYLPSREQDHNLDMASALDVRIALQFFVNKSRLYLPAGSKAGMLGFYDVAANPTWFLHASTSADDYDAGHSKSTAATFHAPIRPPHHRRKIRRDRPRLYIRYSYLGKVYEMSVDDIESVDLPPLDSSHTCLGLEGDVK 620
            DE   DA+DAAARLLQ  LR + QRELY  LNV  SAS EEIRAAYLRVASSYHPDRV P LR DSEAQFLK+DRAYKVLTDPLMRQAYD  GERGLRLLQAVP HE+LP+RFP EVAYILE+LSAEEMQY+ALSAQ SSGT+TVHME+PRPLQ PRLKQLSV+QQVEV LTGATSLF G++V+NRKAVG+GMGY+G RLQL K TWVS TY+LSQKRKLTIE+SR+LS AVNVR SLS AE+GN+GLKLASSRR+SASL GT DL  G+ EDEA+ FGLTSSNGKRELTGRLRVSDSEVA+KGIYENRISNA  VKCVGK+GTRG+EC+LGATRNLSSL  +N GL V +DGVTVSI+ARKGR H+++PIKIS  LDPWSVLVGS+L+AGLNAGLVLLVRPFEKAR+QRQLRMLE+E+ E+QAR RRNAAAQVRLMAEA+ RK   EK AMKGLGGLVIL  RYGTS++P + PPD +WYL SR+++  LD A+ALDVR+ LQFFVNKSRL LP GSKAGMLGFYDV+ANPTW    STS+D  +    KS+A  F AP+RPP       + R RLY+RYSYLGKVYE+SVDDIE ++LPP+D+SHTCLG EG V+
Sbjct:    4 DERDGDASDAAARLLQRKLRASNQRELYKALNVPPSASSEEIRAAYLRVASSYHPDRVDPPLREDSEAQFLKIDRAYKVLTDPLMRQAYDKFGERGLRLLQAVPQHEMLPLRFPCEVAYILEDLSAEEMQYSALSAQGSSGTVTVHMEIPRPLQPPRLKQLSVEQQVEVPLTGATSLFAGIFVINRKAVGMGMGYVGARLQLSKATWVSCTYLLSQKRKLTIESSRELSGAVNVRASLSCAENGNLGLKLASSRRMSASLTGTVDLTAGSGEDEAIGFGLTSSNGKRELTGRLRVSDSEVAVKGIYENRISNAVLVKCVGKLGTRGVECLLGATRNLSSLATINLGLGVGMDGVTVSIQARKGRHHVHVPIKISPHLDPWSVLVGSLLSAGLNAGLVLLVRPFEKARIQRQLRMLEREVSERQARGRRNAAAQVRLMAEASIRKTQVEKRAMKGLGGLVILEARYGTSSMPQKAPPDPEWYLLSRDKEQALDRATALDVRVPLQFFVNKSRLQLPPGSKAGMLGFYDVSANPTWLYDPSTSSDGSEP--DKSSATAFRAPLRPPRPPEAKTKARTRLYVRYSYLGKVYEVSVDDIEPLELPPMDTSHTCLGTEGQVR 618          
The following BLAST results are available for this feature:
BLAST of NO06G00720.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26128.14.400e-25675.36Heat shock protein DnaJ [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G00720NO06G00720Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G00720.1NO06G00720.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G00720.1.cds1NO06G00720.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G00720.1 ID=NO06G00720.1|Name=NO06G00720.1|organism=Nannochloropsis oceanica|type=mRNA|length=1860bp
ATGAAGGATGAGGAGCAAGAAGACGCCACCGACGCCGCCGCTCGGCTCCT
ACAGAGCAACTTGCGGAGAAATCAGCAACGCGAGCTGTACTCATTTTTGA
ACGTGCAAAAATCGGCCTCACCCGAAGAGATTCGGGCTGCCTATTTGCGC
GTCGCCTCGTCGTACCACCCAGATCGCGTGACACCGTCCCTGCGGGCGGA
CTCCGAAGCCCAGTTCCTCAAGGTGGATAGGGCATATAAAGTGCTTACTG
ACCCGTTGATGCGGCAGGCATATGATCACCTGGGAGAGCGAGGACTGCGG
CTGCTCCAGGCCGTCCCCGCCCATGAGCTCCTGCCGATGCGCTTTCCTTT
GGAAGTGGCGTACATCTTGGAGGAGCTGTCGGCAGAAGAGATGCAGTACG
CGGCCTTGAGTGCTCAGAATTCGTCGGGCACCATCACTGTGCACATGGAG
GTGCCCCGGCCTTTGCAGACGCCCCGCCTCAAGCAGCTCTCGGTGGATCA
GCAGGTGGAAGTATCCTTGACGGGCGCCACCAGCCTCTTCGGCGGGCTGT
ACGTGATGAATCGGAAGGCCGTGGGGATTGGCATGGGGTACATCGGTACA
CGTCTGCAACTGGGTAAGGGAACCTGGGTTTCCGGTACGTACGTCCTCAG
CCAAAAGCGGAAGCTGACAATCGAAACCTCGCGGGATCTCTCGCGCGCCG
TCAACGTGCGGGTGTCGTTGTCGGGCGCCGAATCGGGAAACGTTGGTCTC
AAGCTAGCCTCCTCTCGGCGTGTAAGTGCCAGCTTGATGGGAACTGCGGA
CCTGGCAGTGGGCACATGTGAGGACGAGGCGCTGGCATTTGGACTCACAT
CCTCGAACGGGAAGCGTGAGCTGACAGGCCGCCTGCGCGTGTCGGACTCG
GAGGTGGCGCTGAAGGGCATTTATGAAAACCGCATCTCCAACGCCTTTCA
GGTCAAATGTGTCGGCAAAGTGGGCACCCGTGGCCTGGAGTGCATGTTGG
GAGCCACACGCAATTTGTCCAGCCTGACGGCCGTGAACTTCGGGCTGAGC
GTGGCATTGGACGGGGTTACGGTCAGCATCAAGGCCCGCAAAGGCCGCCA
GCATATCTACATCCCCATCAAGATTTCTGCACGCTTGGACCCCTGGTCTG
TCTTGGTAGGCAGCGTCTTGAACGCCGGTCTCAATGCAGGACTGGTGCTG
CTGGTCCGGCCCTTCGAGAAGGCCCGCGTCCAGCGGCAGCTGCGAATGCT
GGAGAAGGAGCTCGTAGAGAAGCAAGCCCGTGAGAGGCGCAACGCAGCGG
CCCAGGTCAGGCTAATGGCTGAGGCGGCACAGCGCAAGGCTGCGGCAGAG
AAGTCGGCGATGAAGGGCCTTGGTGGACTGGTTATCCTAGTGGGTCGCTA
TGGCACGTCAGCCTTGCCGCACCAGCGGCCACCGGACAGCGACTGGTACC
TACCCAGCCGCGAGCAAGACCACAATCTGGACATGGCCTCCGCGTTGGAC
GTGCGTATCGCGCTCCAGTTCTTCGTGAATAAGTCCCGCCTGTATCTGCC
GGCGGGCAGCAAGGCGGGTATGCTGGGGTTTTATGACGTGGCCGCCAATC
CCACCTGGTTTCTTCATGCCTCCACTTCGGCCGACGACTACGACGCCGGC
CACAGCAAGAGCACGGCGGCAACCTTTCACGCGCCCATCCGCCCCCCGCA
CCACAGGCGCAAAATCCGGAGGGACCGGCCACGTTTGTACATTCGGTACA
GCTACCTGGGCAAAGTTTACGAAATGTCCGTCGACGACATTGAGAGCGTG
GATCTGCCGCCTCTCGACTCCAGTCACACCTGTCTGGGCCTGGAGGGCGA
TGTCAAGTAG
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protein sequence of NO06G00720.1

>NO06G00720.1-protein ID=NO06G00720.1-protein|Name=NO06G00720.1|organism=Nannochloropsis oceanica|type=polypeptide|length=620bp
MKDEEQEDATDAAARLLQSNLRRNQQRELYSFLNVQKSASPEEIRAAYLR
VASSYHPDRVTPSLRADSEAQFLKVDRAYKVLTDPLMRQAYDHLGERGLR
LLQAVPAHELLPMRFPLEVAYILEELSAEEMQYAALSAQNSSGTITVHME
VPRPLQTPRLKQLSVDQQVEVSLTGATSLFGGLYVMNRKAVGIGMGYIGT
RLQLGKGTWVSGTYVLSQKRKLTIETSRDLSRAVNVRVSLSGAESGNVGL
KLASSRRVSASLMGTADLAVGTCEDEALAFGLTSSNGKRELTGRLRVSDS
EVALKGIYENRISNAFQVKCVGKVGTRGLECMLGATRNLSSLTAVNFGLS
VALDGVTVSIKARKGRQHIYIPIKISARLDPWSVLVGSVLNAGLNAGLVL
LVRPFEKARVQRQLRMLEKELVEKQARERRNAAAQVRLMAEAAQRKAAAE
KSAMKGLGGLVILVGRYGTSALPHQRPPDSDWYLPSREQDHNLDMASALD
VRIALQFFVNKSRLYLPAGSKAGMLGFYDVAANPTWFLHASTSADDYDAG
HSKSTAATFHAPIRPPHHRRKIRRDRPRLYIRYSYLGKVYEMSVDDIESV
DLPPLDSSHTCLGLEGDVK*
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mRNA from alignment at chr6:259106..260965+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G00720.1 ID=NO06G00720.1|Name=NO06G00720.1|organism=Nannochloropsis oceanica|type=mRNA|length=1860bp|location=Sequence derived from alignment at chr6:259106..260965+ (Nannochloropsis oceanica)
ATGAAGGATGAGGAGCAAGAAGACGCCACCGACGCCGCCGCTCGGCTCCT ACAGAGCAACTTGCGGAGAAATCAGCAACGCGAGCTGTACTCATTTTTGA ACGTGCAAAAATCGGCCTCACCCGAAGAGATTCGGGCTGCCTATTTGCGC GTCGCCTCGTCGTACCACCCAGATCGCGTGACACCGTCCCTGCGGGCGGA CTCCGAAGCCCAGTTCCTCAAGGTGGATAGGGCATATAAAGTGCTTACTG ACCCGTTGATGCGGCAGGCATATGATCACCTGGGAGAGCGAGGACTGCGG CTGCTCCAGGCCGTCCCCGCCCATGAGCTCCTGCCGATGCGCTTTCCTTT GGAAGTGGCGTACATCTTGGAGGAGCTGTCGGCAGAAGAGATGCAGTACG CGGCCTTGAGTGCTCAGAATTCGTCGGGCACCATCACTGTGCACATGGAG GTGCCCCGGCCTTTGCAGACGCCCCGCCTCAAGCAGCTCTCGGTGGATCA GCAGGTGGAAGTATCCTTGACGGGCGCCACCAGCCTCTTCGGCGGGCTGT ACGTGATGAATCGGAAGGCCGTGGGGATTGGCATGGGGTACATCGGTACA CGTCTGCAACTGGGTAAGGGAACCTGGGTTTCCGGTACGTACGTCCTCAG CCAAAAGCGGAAGCTGACAATCGAAACCTCGCGGGATCTCTCGCGCGCCG TCAACGTGCGGGTGTCGTTGTCGGGCGCCGAATCGGGAAACGTTGGTCTC AAGCTAGCCTCCTCTCGGCGTGTAAGTGCCAGCTTGATGGGAACTGCGGA CCTGGCAGTGGGCACATGTGAGGACGAGGCGCTGGCATTTGGACTCACAT CCTCGAACGGGAAGCGTGAGCTGACAGGCCGCCTGCGCGTGTCGGACTCG GAGGTGGCGCTGAAGGGCATTTATGAAAACCGCATCTCCAACGCCTTTCA GGTCAAATGTGTCGGCAAAGTGGGCACCCGTGGCCTGGAGTGCATGTTGG GAGCCACACGCAATTTGTCCAGCCTGACGGCCGTGAACTTCGGGCTGAGC GTGGCATTGGACGGGGTTACGGTCAGCATCAAGGCCCGCAAAGGCCGCCA GCATATCTACATCCCCATCAAGATTTCTGCACGCTTGGACCCCTGGTCTG TCTTGGTAGGCAGCGTCTTGAACGCCGGTCTCAATGCAGGACTGGTGCTG CTGGTCCGGCCCTTCGAGAAGGCCCGCGTCCAGCGGCAGCTGCGAATGCT GGAGAAGGAGCTCGTAGAGAAGCAAGCCCGTGAGAGGCGCAACGCAGCGG CCCAGGTCAGGCTAATGGCTGAGGCGGCACAGCGCAAGGCTGCGGCAGAG AAGTCGGCGATGAAGGGCCTTGGTGGACTGGTTATCCTAGTGGGTCGCTA TGGCACGTCAGCCTTGCCGCACCAGCGGCCACCGGACAGCGACTGGTACC TACCCAGCCGCGAGCAAGACCACAATCTGGACATGGCCTCCGCGTTGGAC GTGCGTATCGCGCTCCAGTTCTTCGTGAATAAGTCCCGCCTGTATCTGCC GGCGGGCAGCAAGGCGGGTATGCTGGGGTTTTATGACGTGGCCGCCAATC CCACCTGGTTTCTTCATGCCTCCACTTCGGCCGACGACTACGACGCCGGC CACAGCAAGAGCACGGCGGCAACCTTTCACGCGCCCATCCGCCCCCCGCA CCACAGGCGCAAAATCCGGAGGGACCGGCCACGTTTGTACATTCGGTACA GCTACCTGGGCAAAGTTTACGAAATGTCCGTCGACGACATTGAGAGCGTG GATCTGCCGCCTCTCGACTCCAGTCACACCTGTCTGGGCCTGGAGGGCGA TGTCAAGTAG
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Coding sequence (CDS) from alignment at chr6:259106..260965+

>NO06G00720.1 ID=NO06G00720.1|Name=NO06G00720.1|organism=Nannochloropsis oceanica|type=CDS|length=1860bp|location=Sequence derived from alignment at chr6:259106..260965+ (Nannochloropsis oceanica)
ATGAAGGATGAGGAGCAAGAAGACGCCACCGACGCCGCCGCTCGGCTCCT
ACAGAGCAACTTGCGGAGAAATCAGCAACGCGAGCTGTACTCATTTTTGA
ACGTGCAAAAATCGGCCTCACCCGAAGAGATTCGGGCTGCCTATTTGCGC
GTCGCCTCGTCGTACCACCCAGATCGCGTGACACCGTCCCTGCGGGCGGA
CTCCGAAGCCCAGTTCCTCAAGGTGGATAGGGCATATAAAGTGCTTACTG
ACCCGTTGATGCGGCAGGCATATGATCACCTGGGAGAGCGAGGACTGCGG
CTGCTCCAGGCCGTCCCCGCCCATGAGCTCCTGCCGATGCGCTTTCCTTT
GGAAGTGGCGTACATCTTGGAGGAGCTGTCGGCAGAAGAGATGCAGTACG
CGGCCTTGAGTGCTCAGAATTCGTCGGGCACCATCACTGTGCACATGGAG
GTGCCCCGGCCTTTGCAGACGCCCCGCCTCAAGCAGCTCTCGGTGGATCA
GCAGGTGGAAGTATCCTTGACGGGCGCCACCAGCCTCTTCGGCGGGCTGT
ACGTGATGAATCGGAAGGCCGTGGGGATTGGCATGGGGTACATCGGTACA
CGTCTGCAACTGGGTAAGGGAACCTGGGTTTCCGGTACGTACGTCCTCAG
CCAAAAGCGGAAGCTGACAATCGAAACCTCGCGGGATCTCTCGCGCGCCG
TCAACGTGCGGGTGTCGTTGTCGGGCGCCGAATCGGGAAACGTTGGTCTC
AAGCTAGCCTCCTCTCGGCGTGTAAGTGCCAGCTTGATGGGAACTGCGGA
CCTGGCAGTGGGCACATGTGAGGACGAGGCGCTGGCATTTGGACTCACAT
CCTCGAACGGGAAGCGTGAGCTGACAGGCCGCCTGCGCGTGTCGGACTCG
GAGGTGGCGCTGAAGGGCATTTATGAAAACCGCATCTCCAACGCCTTTCA
GGTCAAATGTGTCGGCAAAGTGGGCACCCGTGGCCTGGAGTGCATGTTGG
GAGCCACACGCAATTTGTCCAGCCTGACGGCCGTGAACTTCGGGCTGAGC
GTGGCATTGGACGGGGTTACGGTCAGCATCAAGGCCCGCAAAGGCCGCCA
GCATATCTACATCCCCATCAAGATTTCTGCACGCTTGGACCCCTGGTCTG
TCTTGGTAGGCAGCGTCTTGAACGCCGGTCTCAATGCAGGACTGGTGCTG
CTGGTCCGGCCCTTCGAGAAGGCCCGCGTCCAGCGGCAGCTGCGAATGCT
GGAGAAGGAGCTCGTAGAGAAGCAAGCCCGTGAGAGGCGCAACGCAGCGG
CCCAGGTCAGGCTAATGGCTGAGGCGGCACAGCGCAAGGCTGCGGCAGAG
AAGTCGGCGATGAAGGGCCTTGGTGGACTGGTTATCCTAGTGGGTCGCTA
TGGCACGTCAGCCTTGCCGCACCAGCGGCCACCGGACAGCGACTGGTACC
TACCCAGCCGCGAGCAAGACCACAATCTGGACATGGCCTCCGCGTTGGAC
GTGCGTATCGCGCTCCAGTTCTTCGTGAATAAGTCCCGCCTGTATCTGCC
GGCGGGCAGCAAGGCGGGTATGCTGGGGTTTTATGACGTGGCCGCCAATC
CCACCTGGTTTCTTCATGCCTCCACTTCGGCCGACGACTACGACGCCGGC
CACAGCAAGAGCACGGCGGCAACCTTTCACGCGCCCATCCGCCCCCCGCA
CCACAGGCGCAAAATCCGGAGGGACCGGCCACGTTTGTACATTCGGTACA
GCTACCTGGGCAAAGTTTACGAAATGTCCGTCGACGACATTGAGAGCGTG
GATCTGCCGCCTCTCGACTCCAGTCACACCTGTCTGGGCCTGGAGGGCGA
TGTCAAGTAG
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Synonyms
Publications