NO06G00670.1, NO06G00670.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G00670.1
Unique NameNO06G00670.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2211
Alignment locationchr6:246583..248997 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:246583..248997 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO06G00670.1 vs.
Match: EWM26081.1 (Replication factor Mcm10 [Nannochloropsis gaditana])

HSP 1 Score: 358.2 bits (918), Expect = 6.000e-95
Identity = 281/673 (41.75%), Postives = 372/673 (55.27%), Query Frame = 0
Query:   66 APLLPPTSLGDLVASRRKATPTTTLTTTKLIPFQLRTVNLSSDEIESLLQDRVLKRLSSLISFLHGETAASLPDFAIVGVLSKKGPRKLSRNGKDYAEWLIDDLEGRSVKILIFGGALVGGQSLPVGAVCLLLQPKPLDSGPGRLAAPSLAIYEPSQVVLVGISANFATCGFTDVRGFQCDKVYNRLMARFCEQHSRSSSGRTDMQRGKVASGPRFTALPSDAATMVPTPGQQCQGGTGLIVRPNLIRNPVPKKQAGAAAGSGKRKERLERMIKQGQPYRAYRWQPTLVNSSKKLDAVGAAASGTDKGSSCSSCSSSSSSNSSKSSSSSSSSSSSSSSSSSSSSSSSSSSSSNSSSSSSRSSSRSSDGDRWAGGARRGASGSVIVPQKMEGDRVREVAAILAMDEPKKDGDVLVPEPSRIFERGGDAVAYALFKHQQEAARMAREAAAFHCRQLQQKKSEAKAVQALKIRKGLGGTLRMAPKLAVSASIFNVPGTAPMPAGHGSRQQYRSGMKAEEAEKLMKSKSKHSAEARSELMGHLDGVFEALHEKEARAEELKVLSSIDITAFHCSECDRFYEKHPSLCAHNKHRLRKAPIKKRFFLCGNIGCTGETAVLGLTAPREACDRCGEKLWRAKGKGNTAAAGD---GKRGGVGNLILSISESNRNADVSTLY 736
            APL P   L         A PT     ++LIPF+L T+  SSDEIE+ +  R L +++ +   L        P++A+VGVL +K PRK S+NG +Y  W ID+L+G+S+KIL+FG A++ G+++P+GAVCLLL P  + S P   AA SL I++P QV+ +G+SA++ATCGF D  GF+CDKVYNR                            RF  + S        P  Q       +  PN +    P +   ++  +G  +             R +  +P +   +  +D   +      K +              K      S +   + S ++ + +   S +N +       +    GDR         S  + V Q  + + VR +AAILA DE  KDG+VL+PEPSRIF RG D+VAYA F+H+QEA R AR+  A   RQLQQK+SEAKAV+A+   K +GGT+RM  K            T P  AG+  RQ Y  GM   EAE LMKSKSKHSAEAR ELM HL GVFEAL EKE RAE  K LSSI++ A  C EC+R +EKHP LCA   H L++  IKKRFF+CGN GC+ E ++LG  AP EAC RCGEKLWRAKGKG+ AAAG     K  GVG LI ++SE NRNAD+S+LY
Sbjct:   37 APLSPCKGLPLTHPCAIDAAPTKM---SRLIPFELSTLKKSSDEIENSIAGRPLLQVNDIGGVLS-------PNYALVGVLGEKEPRKQSKNGCNYIVWFIDNLKGQSIKILLFGDAVLSGENVPLGAVCLLLDP--VGSRPAPSAAMSLKIHKPHQVIQIGLSAHYATCGFIDPYGFECDKVYNR-------------------------HNARFCKVHS-----ATPPSSQA------LSLPNRVAITAPSRAITSSLPTGTTRPC---------GLRGHNGKPHISRPTMSVDRPSSLIQKPGKIARYQPKKRELLEKIIKRDQPHRSYTWQPTLSRTARTVNVPESRTNQTFDGHVGGTNLGTGDR---------SARMDVQQTAKENGVRGIAAILAADELNKDGEVLIPEPSRIFARGPDSVAYAAFRHEQEAKRQARQVGALQYRQLQQKQSEAKAVRAMNFCKRMGGTIRMIQKPENVMLKPKPRMTVPSSAGN-RRQLYADGMGLNEAESLMKSKSKHSAEARGELMEHLHGVFEALGEKETRAEYFKNLSSIEVVAVSCQECNRLFEKHPRLCAKRGHILKRLTIKKRFFICGNQGCSEEVSMLGSAAPHEACSRCGEKLWRAKGKGSKAAAGGDTRAKSNGVGVLIPAVSEWNRNADLSSLY 642          
The following BLAST results are available for this feature:
BLAST of NO06G00670.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26081.16.000e-9541.75Replication factor Mcm10 [Nannochloropsis gaditana... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G00670NO06G00670Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G00670.1NO06G00670.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G00670.1.cds1NO06G00670.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G00670.1.cds2NO06G00670.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G00670.1.cds3NO06G00670.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G00670.1 ID=NO06G00670.1|Name=NO06G00670.1|organism=Nannochloropsis oceanica|type=mRNA|length=2211bp
ATGGATGACGAGCTGAGAGCGTTGTTGCAGCAAGCGCAACAACAAAAGAA
TAAGCGACAACGCACGATGGAGCCGAGACCTCCTTCCACAACGCCCATGC
AAGGCCCGCCAACTGTCACTCTGGCTGATTTAGCTGCCCGTATGCATCCA
TCCACGGCGATCAGGAACCCTCTTACCCCCTCTTCTTTCACGACGGCGCC
CTTGCTGCCCCCCACTTCCCTCGGCGATCTCGTTGCATCTCGCAGGAAAG
CAACACCCACTACGACATTGACGACAACGAAGCTGATTCCTTTCCAACTT
CGCACGGTAAATTTGTCATCAGACGAAATTGAATCGCTACTCCAGGACCG
TGTGCTCAAGAGACTTAGCTCTTTGATCTCTTTTTTGCACGGGGAGACGG
CCGCTTCTTTACCTGACTTTGCCATCGTAGGGGTTTTGAGCAAGAAGGGG
CCTCGAAAGCTAAGCCGAAACGGCAAGGACTACGCCGAGTGGTTAATAGA
TGACCTGGAGGGACGCTCAGTCAAAATCTTGATATTTGGGGGTGCATTAG
TGGGCGGTCAAAGCCTGCCTGTAGGCGCTGTCTGCCTCCTCTTGCAGCCC
AAGCCTCTGGACTCCGGGCCCGGGCGGTTGGCAGCCCCATCTTTGGCTAT
CTACGAACCCTCCCAGGTTGTGCTAGTTGGCATTTCTGCCAACTTTGCGA
CGTGCGGTTTCACGGATGTACGGGGATTTCAATGCGACAAGGTCTACAAT
CGCCTCATGGCCCGCTTCTGCGAACAGCATTCTCGATCAAGTTCAGGCAG
GACGGACATGCAGCGGGGCAAGGTGGCCTCCGGCCCGAGATTTACTGCGC
TCCCTTCAGATGCGGCAACCATGGTACCTACACCAGGGCAGCAATGCCAG
GGCGGTACTGGGCTCATCGTCCGGCCCAATTTGATAAGGAACCCTGTCCC
GAAGAAGCAAGCAGGAGCAGCAGCGGGGTCCGGGAAAAGGAAGGAAAGGC
TTGAGAGGATGATCAAGCAGGGTCAGCCTTACCGTGCATATCGATGGCAG
CCTACCCTAGTGAATAGCAGCAAGAAGCTGGACGCTGTTGGGGCAGCGGC
GAGCGGCACAGACAAGGGCAGTAGTTGTAGCAGCTGCAGCAGCAGTAGTA
GTAGTAATAGTAGTAAAAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGT
AGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAG
TAATAGTAGTAGTAGTAGTAGTCGTAGTAGTAGTCGTAGCAGTGATGGTG
ACAGATGGGCTGGCGGCGCAAGGAGGGGTGCCAGCGGGAGCGTGATTGTC
CCCCAAAAGATGGAAGGCGACAGAGTGCGGGAGGTTGCGGCTATCTTGGC
AATGGACGAGCCCAAGAAGGATGGGGATGTACTTGTTCCGGAACCGTCAC
GCATCTTTGAGCGTGGCGGGGACGCTGTCGCTTACGCTTTGTTCAAGCAC
CAGCAGGAGGCAGCACGTATGGCGCGAGAAGCGGCTGCCTTCCACTGCCG
ACAGCTGCAGCAGAAGAAGAGCGAGGCCAAGGCCGTTCAGGCTCTCAAGA
TCCGTAAGGGCTTGGGCGGTACGCTTCGAATGGCTCCGAAGCTGGCCGTA
TCTGCATCCATATTCAACGTGCCCGGCACGGCGCCCATGCCGGCAGGTCA
TGGCTCGCGGCAGCAGTACCGGAGTGGTATGAAGGCAGAGGAGGCGGAGA
AGCTCATGAAGAGCAAGTCCAAGCATTCCGCGGAGGCCCGCAGTGAACTC
ATGGGCCACCTCGACGGTGTCTTCGAGGCCCTACACGAGAAGGAAGCCCG
CGCAGAGGAGCTCAAGGTGCTTTCTTCTATCGACATCACCGCCTTTCACT
GCAGCGAATGCGACAGGTTTTACGAGAAGCACCCCAGCCTGTGCGCCCAT
AATAAGCATCGCCTGAGAAAAGCGCCTATTAAGAAGCGCTTCTTCCTTTG
CGGCAACATCGGCTGCACTGGCGAGACGGCTGTCTTGGGCCTGACAGCCC
CGCGAGAGGCGTGCGACCGTTGCGGAGAGAAGCTGTGGCGGGCAAAGGGG
AAAGGTAACACAGCTGCAGCCGGCGACGGCAAGCGTGGTGGCGTGGGGAA
CCTGATTTTAAGCATATCAGAGTCAAACAGAAACGCCGATGTATCGACTC
TGTATGCATAG
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protein sequence of NO06G00670.1

>NO06G00670.1-protein ID=NO06G00670.1-protein|Name=NO06G00670.1|organism=Nannochloropsis oceanica|type=polypeptide|length=737bp
MDDELRALLQQAQQQKNKRQRTMEPRPPSTTPMQGPPTVTLADLAARMHP
STAIRNPLTPSSFTTAPLLPPTSLGDLVASRRKATPTTTLTTTKLIPFQL
RTVNLSSDEIESLLQDRVLKRLSSLISFLHGETAASLPDFAIVGVLSKKG
PRKLSRNGKDYAEWLIDDLEGRSVKILIFGGALVGGQSLPVGAVCLLLQP
KPLDSGPGRLAAPSLAIYEPSQVVLVGISANFATCGFTDVRGFQCDKVYN
RLMARFCEQHSRSSSGRTDMQRGKVASGPRFTALPSDAATMVPTPGQQCQ
GGTGLIVRPNLIRNPVPKKQAGAAAGSGKRKERLERMIKQGQPYRAYRWQ
PTLVNSSKKLDAVGAAASGTDKGSSCSSCSSSSSSNSSKSSSSSSSSSSS
SSSSSSSSSSSSSSSSSNSSSSSSRSSSRSSDGDRWAGGARRGASGSVIV
PQKMEGDRVREVAAILAMDEPKKDGDVLVPEPSRIFERGGDAVAYALFKH
QQEAARMAREAAAFHCRQLQQKKSEAKAVQALKIRKGLGGTLRMAPKLAV
SASIFNVPGTAPMPAGHGSRQQYRSGMKAEEAEKLMKSKSKHSAEARSEL
MGHLDGVFEALHEKEARAEELKVLSSIDITAFHCSECDRFYEKHPSLCAH
NKHRLRKAPIKKRFFLCGNIGCTGETAVLGLTAPREACDRCGEKLWRAKG
KGNTAAAGDGKRGGVGNLILSISESNRNADVSTLYA*
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mRNA from alignment at chr6:246583..248997-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G00670.1 ID=NO06G00670.1|Name=NO06G00670.1|organism=Nannochloropsis oceanica|type=mRNA|length=2415bp|location=Sequence derived from alignment at chr6:246583..248997- (Nannochloropsis oceanica)
ATGGATGACGAGCTGAGAGCGTTGTTGCAGCAAGCGCAACAACAAAAGAA TAAGCGACAACGCACGATGGAGCCGAGACCTCCTTCCACAACGCCCATGC AAGGCCCGCCAACTGTCACTCTGGCTGATTTAGCTGCCCGTATGCATCCA TCCACGGCGATCAGGAACCCTCTTACCCCCTCTTCTTTCACGACGGCGCC CTTGCTGCCCCCCACTTCCCTCGGCGATCTCGTTGCATCTCGCAGGAAAG CAACACCCACTACGACATTGACGACAACGAAGCTGATTCCTTTCCAACTT CGCACGGTAAATTTGTCATCAGACGAAATTGAATCGCTACTCCAGGACCG TGTGCTCAAGAGACTTAGCTCTTTGATCTCTTTTTTGCACGGGGAGACGG CCGCTTCTTTACCTGACTTTGCCATCGTAGGGGTTTTGAGCAAGAAGGGG CCTCGAAAGCTAAGCCGAAACGGCAAGGACTACGCCGAGTGGTTAATAGA TGACCTGGAGGGACGCTCAGTCAAAATCTTGATATTTGGGGGTGCATTAG TGGGCGGTCAAAGCCTGCCTGTAGGCGCTGTCTGCCTCCTCTTGCAGCCC AAGCCTCTGGACTCCGGGCCCGGGCGGTTGGCAGCCCCATCTTTGGCTAT CTACGAACCCTCCCAGGTTGTGCTAGTTGGCATTTCTGCCAACTTTGCGA CGTGCGGTTTCACGGATGTACGGGGATTTCAATGCGACAAGGTCTACAAT CGCCTCATGGCCCGCTTCTGCGAACAGCATTCTCGATCAAGTTCAGGCAG GACGGACATGCAGCGGGGCAAGGTGGCCTCCGGCCCGAGATTTACTGCGC TCCCTTCAGATGCGGCAACCATGGTACCTACACCAGGGCAGCAATGCCAG GGCGGTACTGGGCTCATCGTCCGGCCCAATTTGATAAGGAACCCTGTCCC GAAGAAGCAAGCAGGAGCAGCAGCGGGGTCCGGGAAAAGGAAGGAAAGGC TTGAGAGGATGATCAAGCAGGGTCAGCCTTACCGTGCATATCGATGGCAG CCTACCCTAGTGAATAGCAGCAAGAAGCTGGACGCTGTTGGGGCAGCGGC GAGCGGCACAGACAAGGGCAGTAGTTGTAGCAGCTGCAGCAGCAGTAGTA GTAGTAATAGTAGTAAAAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGT AGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAG TAATAGTAGTAGTAGTAGTAGTCGTAGTAGTAGTCGTAGCAGTGATGGTG ACAGATGGGCTGGCGGCGCAAGGAGGGGTGCCAGCGGGAGCGTGATTGTC CCCCAAAAGATGGAAGGCGACAGAGTGAGTAGAATACCGGAAAGACAGAA TTCGCTGGAAATAGACCGTGTGGTCGATTGTCTAATATTCCCTTCTATCG CCCTCTGGTCCCTTCTTTACTCTTATCTTTCATGCCCTAGGTGCGGGAGG TTGCGGCTATCTTGGCAATGGACGAGCCCAAGAAGGATGGGGATGTACTT GTTCCGGAACCGTCACGCATCTTTGAGCGTGGCGGGGACGCTGTCGCTTA CGCTTTGTTCAAGCACCAGCAGGAGGCAGCACGTATGGCGCGAGAAGCGG CTGCCTTCCACTGCCGACAGCTGCAGCAGAAGAAGAGCGAGGCCAAGGCC GTTCAGGCTCTCAAGATCCGTAAGGGCTTGGGCGGTACGCTTCGAATGGC TCCGAAGCTGGCCGTATCTGCATCCATATTCAACGTGCCCGGCACGGCGC CCATGCCGGCAGGTCATGGCTCGCGGCAGCAGTACCGGAGTGGTATGAAG GCAGAGGAGGCGGAGAAGCTCATGAAGAGCAAGTCCAAGCATTCCGCGGA GGCCCGCAGTGTAAGTCGGGTAGCCTGAAGTGAGCATATCAATTCCGATC GGTGTGACATCATTCCCATCATTTCCTCTTCTCCCACACGCCATCCAGGA ACTCATGGGCCACCTCGACGGTGTCTTCGAGGCCCTACACGAGAAGGAAG CCCGCGCAGAGGAGCTCAAGGTGCTTTCTTCTATCGACATCACCGCCTTT CACTGCAGCGAATGCGACAGGTTTTACGAGAAGCACCCCAGCCTGTGCGC CCATAATAAGCATCGCCTGAGAAAAGCGCCTATTAAGAAGCGCTTCTTCC TTTGCGGCAACATCGGCTGCACTGGCGAGACGGCTGTCTTGGGCCTGACA GCCCCGCGAGAGGCGTGCGACCGTTGCGGAGAGAAGCTGTGGCGGGCAAA GGGGAAAGGTAACACAGCTGCAGCCGGCGACGGCAAGCGTGGTGGCGTGG GGAACCTGATTTTAAGCATATCAGAGTCAAACAGAAACGCCGATGTATCG ACTCTGTATGCATAG
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Coding sequence (CDS) from alignment at chr6:246583..248997-

>NO06G00670.1 ID=NO06G00670.1|Name=NO06G00670.1|organism=Nannochloropsis oceanica|type=CDS|length=2211bp|location=Sequence derived from alignment at chr6:246583..248997- (Nannochloropsis oceanica)
ATGGATGACGAGCTGAGAGCGTTGTTGCAGCAAGCGCAACAACAAAAGAA
TAAGCGACAACGCACGATGGAGCCGAGACCTCCTTCCACAACGCCCATGC
AAGGCCCGCCAACTGTCACTCTGGCTGATTTAGCTGCCCGTATGCATCCA
TCCACGGCGATCAGGAACCCTCTTACCCCCTCTTCTTTCACGACGGCGCC
CTTGCTGCCCCCCACTTCCCTCGGCGATCTCGTTGCATCTCGCAGGAAAG
CAACACCCACTACGACATTGACGACAACGAAGCTGATTCCTTTCCAACTT
CGCACGGTAAATTTGTCATCAGACGAAATTGAATCGCTACTCCAGGACCG
TGTGCTCAAGAGACTTAGCTCTTTGATCTCTTTTTTGCACGGGGAGACGG
CCGCTTCTTTACCTGACTTTGCCATCGTAGGGGTTTTGAGCAAGAAGGGG
CCTCGAAAGCTAAGCCGAAACGGCAAGGACTACGCCGAGTGGTTAATAGA
TGACCTGGAGGGACGCTCAGTCAAAATCTTGATATTTGGGGGTGCATTAG
TGGGCGGTCAAAGCCTGCCTGTAGGCGCTGTCTGCCTCCTCTTGCAGCCC
AAGCCTCTGGACTCCGGGCCCGGGCGGTTGGCAGCCCCATCTTTGGCTAT
CTACGAACCCTCCCAGGTTGTGCTAGTTGGCATTTCTGCCAACTTTGCGA
CGTGCGGTTTCACGGATGTACGGGGATTTCAATGCGACAAGGTCTACAAT
CGCCTCATGGCCCGCTTCTGCGAACAGCATTCTCGATCAAGTTCAGGCAG
GACGGACATGCAGCGGGGCAAGGTGGCCTCCGGCCCGAGATTTACTGCGC
TCCCTTCAGATGCGGCAACCATGGTACCTACACCAGGGCAGCAATGCCAG
GGCGGTACTGGGCTCATCGTCCGGCCCAATTTGATAAGGAACCCTGTCCC
GAAGAAGCAAGCAGGAGCAGCAGCGGGGTCCGGGAAAAGGAAGGAAAGGC
TTGAGAGGATGATCAAGCAGGGTCAGCCTTACCGTGCATATCGATGGCAG
CCTACCCTAGTGAATAGCAGCAAGAAGCTGGACGCTGTTGGGGCAGCGGC
GAGCGGCACAGACAAGGGCAGTAGTTGTAGCAGCTGCAGCAGCAGTAGTA
GTAGTAATAGTAGTAAAAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGT
AGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAG
TAATAGTAGTAGTAGTAGTAGTCGTAGTAGTAGTCGTAGCAGTGATGGTG
ACAGATGGGCTGGCGGCGCAAGGAGGGGTGCCAGCGGGAGCGTGATTGTC
CCCCAAAAGATGGAAGGCGACAGAGTGCGGGAGGTTGCGGCTATCTTGGC
AATGGACGAGCCCAAGAAGGATGGGGATGTACTTGTTCCGGAACCGTCAC
GCATCTTTGAGCGTGGCGGGGACGCTGTCGCTTACGCTTTGTTCAAGCAC
CAGCAGGAGGCAGCACGTATGGCGCGAGAAGCGGCTGCCTTCCACTGCCG
ACAGCTGCAGCAGAAGAAGAGCGAGGCCAAGGCCGTTCAGGCTCTCAAGA
TCCGTAAGGGCTTGGGCGGTACGCTTCGAATGGCTCCGAAGCTGGCCGTA
TCTGCATCCATATTCAACGTGCCCGGCACGGCGCCCATGCCGGCAGGTCA
TGGCTCGCGGCAGCAGTACCGGAGTGGTATGAAGGCAGAGGAGGCGGAGA
AGCTCATGAAGAGCAAGTCCAAGCATTCCGCGGAGGCCCGCAGTGAACTC
ATGGGCCACCTCGACGGTGTCTTCGAGGCCCTACACGAGAAGGAAGCCCG
CGCAGAGGAGCTCAAGGTGCTTTCTTCTATCGACATCACCGCCTTTCACT
GCAGCGAATGCGACAGGTTTTACGAGAAGCACCCCAGCCTGTGCGCCCAT
AATAAGCATCGCCTGAGAAAAGCGCCTATTAAGAAGCGCTTCTTCCTTTG
CGGCAACATCGGCTGCACTGGCGAGACGGCTGTCTTGGGCCTGACAGCCC
CGCGAGAGGCGTGCGACCGTTGCGGAGAGAAGCTGTGGCGGGCAAAGGGG
AAAGGTAACACAGCTGCAGCCGGCGACGGCAAGCGTGGTGGCGTGGGGAA
CCTGATTTTAAGCATATCAGAGTCAAACAGAAACGCCGATGTATCGACTC
TGTATGCATAG
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Synonyms
Publications