NO06G00660.1, NO06G00660.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G00660.1
Unique NameNO06G00660.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1631
Alignment locationchr6:244236..246476 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:244236..246476 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO06G00660.1 vs.
Match: EWM26150.1 (conserved unknown protein [Nannochloropsis gaditana])

HSP 1 Score: 448.7 bits (1153), Expect = 1.700e-122
Identity = 260/366 (71.04%), Postives = 283/366 (77.32%), Query Frame = 0 
Query:    1 MKFGKQLAKVVALSDPEWAPFWVSYKALKKRVKELTDSPPPGTQPRDAGTVAHGHHSAPATNTEPNPKELAQSVGEVAFFRTLRAEVAKASEFFLGMEQQMGARRRRIKMGLQYMKQPTTVLEDDAWMKMRRACISLYKDLLLLENFAVMNYCACSKALKKHDKTVVLDTRARFMRNVVNQQPFTHYPRLLEMLQEMEETFKEIDASQGDTARPLEDEERLFLEAIRGLNQEASSMQREEKADLGHTSSTSDQEHSADDQPAASDAAATGRNAATPINATTNNDTRGAASESVSQSKRLKTQKPAAAIVPEWRGGTGDGDGAGLGAGAGEHAK---GGGKLKEARPAEEVEAEPAGGESAGKRRRV 364
            MKFGKQLAKVVALSDPEWAPFWVSYKALKKRVKELT+SPP  TQPRDAG+  +   + P+TNTEPNPKELAQS GEVAFFRTLRAEVAKASEF+LGMEQQMGARRRRIK+GLQY+KQPTTVLEDDAW+KM RACISLYKDLLLLENFAVMNYCACSKALKKHDKTVVLDTR+RFMRNVVNQQPFTHYPRLLEMLQEMEE FKEIDA QGD ARPLE+EERLFLEAIRGLNQEASSMQREEKADLG  +STSD EHSADDQPAA DAA                   GAA ++       ++   +A +VPE   G GD     +G  A   +K   G   +     A   E     G + GKRRR+
Sbjct:    1 MKFGKQLAKVVALSDPEWAPFWVSYKALKKRVKELTESPPAATQPRDAGSSIN--QTGPSTNTEPNPKELAQSAGEVAFFRTLRAEVAKASEFYLGMEQQMGARRRRIKLGLQYLKQPTTVLEDDAWIKMGRACISLYKDLLLLENFAVMNYCACSKALKKHDKTVVLDTRSRFMRNVVNQQPFTHYPRLLEMLQEMEEIFKEIDALQGDKARPLEEEERLFLEAIRGLNQEASSMQREEKADLG-GASTSDPEHSADDQPAARDAATAA----------------GAACQT------HRSAPASATVVPELASG-GDAAREEIGTDATPASKVSDGDPSVTPPTAAVADEVAETEGANGGKRRRL 340
The following BLAST results are available for this feature:
BLAST of NO06G00660.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26150.11.700e-12271.04conserved unknown protein [Nannochloropsis gaditan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G00660NO06G00660Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G00660.1NO06G00660.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G00660.1.cds1NO06G00660.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G00660.1.cds2NO06G00660.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G00660.1 ID=NO06G00660.1|Name=NO06G00660.1|organism=Nannochloropsis oceanica|type=mRNA|length=1631bp
GACGGCCTCTCGGGAAACCCTGTTGATTCAATCGATATTCATTCCCGTCT
CCGTCAACTTCATGACCGCGCGCTCCCCCTCCCAACACCACGCATACAGT
GCCTTGCCTGCCCACCGTGTAGGAGCCACGAGTGACTGCTTACGAGAGGG
TTCGGCTTGCCGTGGCCCGCCCTGTCTGGCCGAGCTTTCCATCCTGGAAC
CCCTCGACCCTCCCCACCCCTTCCAGCTGACCCACTACTAGCCCCAGCCT
TGGCAGCATGAAGTTTGGCAAGCAACTGGCGAAGGTGGTAGCCCTCTCGG
ATCCGGAGTGGGCGCCCTTCTGGGTCAGCTATAAGGCCCTCAAGAAGCGC
GTCAAAGAACTTACCGACTCCCCCCCGCCTGGCACGCAACCTCGTGACGC
GGGTACCGTCGCACATGGACACCACAGCGCGCCCGCCACCAACACCGAGC
CAAATCCCAAGGAGCTGGCGCAAAGCGTGGGGGAGGTGGCTTTCTTCCGC
ACCCTGCGCGCGGAAGTGGCCAAGGCCTCGGAGTTCTTCCTGGGTATGGA
GCAGCAGATGGGCGCCCGACGCCGCCGCATCAAGATGGGGCTACAGTACA
TGAAACAGCCCACCACTGTGCTGGAAGACGATGCCTGGATGAAAATGCGG
CGAGCATGCATTTCCCTGTATAAGGACCTTCTCCTTCTCGAAAACTTTGC
CGTCATGAACTATTGCGCCTGCTCCAAGGCCCTAAAGAAGCACGACAAGA
CGGTGGTACTGGATACACGGGCGCGTTTTATGCGCAACGTGGTGAATCAG
CAGCCCTTCACGCACTACCCTCGCCTGCTAGAGATGTTGCAGGAGATGGA
AGAGACGTTCAAGGAGATCGACGCATCGCAGGGCGACACGGCGCGGCCAC
TGGAGGATGAGGAGCGGCTCTTCCTAGAGGCCATACGGGGCCTGAACCAG
GAGGCGTCTAGCATGCAGCGCGAGGAGAAGGCTGACCTCGGCCATACCTC
CTCCACCTCCGATCAAGAGCACTCGGCCGACGACCAGCCGGCCGCTAGTG
ACGCTGCTGCTACCGGTCGTAACGCCGCCACCCCTATTAACGCCACCACT
AACAATGATACCAGAGGCGCGGCCAGCGAGTCAGTCAGTCAGTCCAAGAG
ATTAAAGACCCAGAAGCCTGCGGCGGCAATTGTGCCGGAGTGGAGGGGAG
GGACAGGAGATGGAGATGGAGCAGGATTAGGAGCAGGGGCAGGAGAACAT
GCCAAAGGAGGGGGAAAGTTAAAAGAAGCTCGACCAGCAGAAGAAGTTGA
AGCAGAGCCAGCAGGAGGGGAGAGTGCAGGCAAGCGACGCCGTGTCTAGT
CTGTGGGGATAGGGAAAGAAGAAATGGCTCTGTATATATACACACATGCT
TGAAAGCCAAGCAAGCTAGCTAGCCAAGGAGCAAGATTTGGGTATCAAAT
TAAATTTCCACGAGTGTTCACGACTCATTTTCTCGAGCTCGCTTGCATCG
ACAGCCAAAATATCAGAAAGAAGGTTGTAATGATGCGAATGCCGCCATCC
AGCAGACGCAACCACAGCGGGCCCTTAGTCCGGCACTTACAAGGAAGAAA
AGAGCCCAAGAGATACGCTCTACAGCTTGCG
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protein sequence of NO06G00660.1

>NO06G00660.1-protein ID=NO06G00660.1-protein|Name=NO06G00660.1|organism=Nannochloropsis oceanica|type=polypeptide|length=364bp
MKFGKQLAKVVALSDPEWAPFWVSYKALKKRVKELTDSPPPGTQPRDAGT
VAHGHHSAPATNTEPNPKELAQSVGEVAFFRTLRAEVAKASEFFLGMEQQ
MGARRRRIKMGLQYMKQPTTVLEDDAWMKMRRACISLYKDLLLLENFAVM
NYCACSKALKKHDKTVVLDTRARFMRNVVNQQPFTHYPRLLEMLQEMEET
FKEIDASQGDTARPLEDEERLFLEAIRGLNQEASSMQREEKADLGHTSST
SDQEHSADDQPAASDAAATGRNAATPINATTNNDTRGAASESVSQSKRLK
TQKPAAAIVPEWRGGTGDGDGAGLGAGAGEHAKGGGKLKEARPAEEVEAE
PAGGESAGKRRRV*
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mRNA from alignment at chr6:244236..246476+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G00660.1 ID=NO06G00660.1|Name=NO06G00660.1|organism=Nannochloropsis oceanica|type=mRNA|length=2241bp|location=Sequence derived from alignment at chr6:244236..246476+ (Nannochloropsis oceanica)
GACGGCCTCTCGGGAAACCCTGTTGATTCAATCGATATTCATTCCCGTCT
CCGTCAACTTCATGACCGCGCGCTCCCCCTCCCAACACCACGCATACAGT
GCCTTGCCTGCCCACCGTGTAGGAGCCACGAGTGACTGCTTACGAGGTAA
GAAACCTCTTTCTCATTTGCTCTGCCCCTCATCTCAATCGATGCTCATCA
AGCATCTGTCGATATACTGTTCTTGCGAGGAAGGCGCGTAAGGCATGGCA
ACATTCTTGTGTTGTTGCCCCCCACAGGGGGAAAGGAACAATAGTTGACT
GCACGAGTTTGTCCACAGTGGGGATCGATCATAACTTGGTGCAGCAAACT
TTTGCCCCGCCGGCCAAAAGCATATCATGCTCTTGTCCATGACCGACCGT
GAGATGCAGCGCCGCTGAAGCTTCGACCTTCATTCGATGCAACTTACCAT
AGCAATTCGGGCATACGAATCCTGCGCGCCCTGAAGTGTTTCACAGATTT
ATCTTCACTCTTAAGGACCAACCCCTACCCTCCTTTCCCCATGACATAGA
GGGTTCGGCTTGCCGTGGCCCGCCCTGTCTGGCCGAGCTTTCCATCCTGG
AACCCCTCGACCCTCCCCACCCCTTCCAGCTGACCCACTACTAGCCCCAG
CCTTGGCAGCATGAAGTTTGGCAAGCAACTGGCGAAGGTGGTAGCCCTCT
CGGATCCGGAGTGGGCGCCCTTCTGGGTCAGCTATAAGGCCCTCAAGAAG
CGCGTCAAAGAACTTACCGACTCCCCCCCGCCTGGCACGCAACCTCGTGA
CGCGGGTACCGTCGCACATGGACACCACAGCGCGCCCGCCACCAACACCG
AGCCAAATCCCAAGGAGCTGGCGCAAAGCGTGGGGGAGGTGGCTTTCTTC
CGCACCCTGCGCGCGGAAGTGGCCAAGGCCTCGGAGTTCTTCCTGGGTAT
GGAGCAGCAGATGGGCGCCCGACGCCGCCGCATCAAGATGGGGCTACAGT
ACATGAAACAGCCCACCACTGTGCTGGAAGACGATGCCTGGATGAAAATG
CGGCGAGCATGCATTTCCCTGTATAAGGACCTTCTCCTTCTCGAAAACTT
TGCCGTCATGAACTATTGCGGTACGTGAAGGGAAGGGGAGGAGGCCACCA
GGACTTTCTTTTTGTAAATTTGAAAAGTTCAGAAAAGCCCGCGTACACTT
GTCTGCTCTGAGCACGTCATAATATACTATATTCTTGCTTGTATCCCCTT
CGCGTATGACCGCAAGGGAAACTCTTTGTATTTCATTCACCCATACTCTG
TCCCTCCCTTTTCTTTAAATTCCCCAGCCTGCTCCAAGGCCCTAAAGAAG
CACGACAAGACGGTGGTACTGGATACACGGGCGCGTTTTATGCGCAACGT
GGTGAATCAGCAGCCCTTCACGCACTACCCTCGCCTGCTAGAGATGTTGC
AGGAGATGGAAGAGACGTTCAAGGAGATCGACGCATCGCAGGGCGACACG
GCGCGGCCACTGGAGGATGAGGAGCGGCTCTTCCTAGAGGCCATACGGGG
CCTGAACCAGGAGGCGTCTAGCATGCAGCGCGAGGAGAAGGCTGACCTCG
GCCATACCTCCTCCACCTCCGATCAAGAGCACTCGGCCGACGACCAGCCG
GCCGCTAGTGACGCTGCTGCTACCGGTCGTAACGCCGCCACCCCTATTAA
CGCCACCACTAACAATGATACCAGAGGCGCGGCCAGCGAGTCAGTCAGTC
AGTCCAAGAGATTAAAGACCCAGAAGCCTGCGGCGGCAATTGTGCCGGAG
TGGAGGGGAGGGACAGGAGATGGAGATGGAGCAGGATTAGGAGCAGGGGC
AGGAGAACATGCCAAAGGAGGGGGAAAGTTAAAAGAAGCTCGACCAGCAG
AAGAAGTTGAAGCAGAGCCAGCAGGAGGGGAGAGTGCAGGCAAGCGACGC
CGTGTCTAGTCTGTGGGGATAGGGAAAGAAGAAATGGCTCTGTATATATA
CACACATGCTTGAAAGCCAAGCAAGCTAGCTAGCCAAGGAGCAAGATTTG
GGTATCAAATTAAATTTCCACGAGTGTTCACGACTCATTTTCTCGAGCTC
GCTTGCATCGACAGCCAAAATATCAGAAAGAAGGTTGTAATGATGCGAAT
GCCGCCATCCAGCAGACGCAACCACAGCGGGCCCTTAGTCCGGCACTTAC
AAGGAAGAAAAGAGCCCAAGAGATACGCTCTACAGCTTGCG
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Coding sequence (CDS) from alignment at chr6:244236..246476+

>NO06G00660.1 ID=NO06G00660.1|Name=NO06G00660.1|organism=Nannochloropsis oceanica|type=CDS|length=1092bp|location=Sequence derived from alignment at chr6:244236..246476+ (Nannochloropsis oceanica)
ATGAAGTTTGGCAAGCAACTGGCGAAGGTGGTAGCCCTCTCGGATCCGGA
GTGGGCGCCCTTCTGGGTCAGCTATAAGGCCCTCAAGAAGCGCGTCAAAG
AACTTACCGACTCCCCCCCGCCTGGCACGCAACCTCGTGACGCGGGTACC
GTCGCACATGGACACCACAGCGCGCCCGCCACCAACACCGAGCCAAATCC
CAAGGAGCTGGCGCAAAGCGTGGGGGAGGTGGCTTTCTTCCGCACCCTGC
GCGCGGAAGTGGCCAAGGCCTCGGAGTTCTTCCTGGGTATGGAGCAGCAG
ATGGGCGCCCGACGCCGCCGCATCAAGATGGGGCTACAGTACATGAAACA
GCCCACCACTGTGCTGGAAGACGATGCCTGGATGAAAATGCGGCGAGCAT
GCATTTCCCTGTATAAGGACCTTCTCCTTCTCGAAAACTTTGCCGTCATG
AACTATTGCGCCTGCTCCAAGGCCCTAAAGAAGCACGACAAGACGGTGGT
ACTGGATACACGGGCGCGTTTTATGCGCAACGTGGTGAATCAGCAGCCCT
TCACGCACTACCCTCGCCTGCTAGAGATGTTGCAGGAGATGGAAGAGACG
TTCAAGGAGATCGACGCATCGCAGGGCGACACGGCGCGGCCACTGGAGGA
TGAGGAGCGGCTCTTCCTAGAGGCCATACGGGGCCTGAACCAGGAGGCGT
CTAGCATGCAGCGCGAGGAGAAGGCTGACCTCGGCCATACCTCCTCCACC
TCCGATCAAGAGCACTCGGCCGACGACCAGCCGGCCGCTAGTGACGCTGC
TGCTACCGGTCGTAACGCCGCCACCCCTATTAACGCCACCACTAACAATG
ATACCAGAGGCGCGGCCAGCGAGTCAGTCAGTCAGTCCAAGAGATTAAAG
ACCCAGAAGCCTGCGGCGGCAATTGTGCCGGAGTGGAGGGGAGGGACAGG
AGATGGAGATGGAGCAGGATTAGGAGCAGGGGCAGGAGAACATGCCAAAG
GAGGGGGAAAGTTAAAAGAAGCTCGACCAGCAGAAGAAGTTGAAGCAGAG
CCAGCAGGAGGGGAGAGTGCAGGCAAGCGACGCCGTGTCTAG
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Synonyms
Publications