NO06G00620.1, NO06G00620.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G00620.1
Unique NameNO06G00620.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1401
Alignment locationchr6:232797..234884 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:232797..234884 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO06G00620.1 vs.
Match: EWM26121.1 (farnesyltransferase beta subunit [Nannochloropsis gaditana])

HSP 1 Score: 610.9 bits (1574), Expect = 3.300e-171
Identity = 302/477 (63.31%), Postives = 353/477 (74.00%), Query Frame = 0
Query:    2 CVRHLRSLEKLDEHEASGLQAAGFFNDDGEVRLLRKQHLDYVMRGLRYLGPGFICLDASRPWLCYWMLHSIDLLKGLETTGEAAHADVDTELLRHVMTTMASCQNVGGGFGGGTQQLSHCAPTYAAVLALLIVGTEEAYRIIDRPALYRWFLARKHPSGGFCMHDDGEVDVRGTYTVISIASLLNLLTPELTADVADYLLSCQTYEGGFGGEPGQEAHGGYVFCAFAALVILGRAEEADLVSLEGWVARRQMEMEGGFQGRTNKLVDGCYSFWQGATAVLVDMVLSGEGEAEEAVGWR-GSLGQAQPCSSRPSSPCLQTGDGKDGGSPRLDEVSADDAANISYKTVAIQPSLDVGEHDTPSLGRVPGLNQHALQRYILHCAQALDGGLRDKPGKPRDFYHTCYNLSGLSCAQWG-----------RAGGKGGTALVYGDVGNLLHITNPVYNIRREKVERALRFYY-TAPASHGALL 466
            C   L S   LD+     LQA+G FND G++RLLR++H+ Y+M+GL +LGPGFICLDASRPWLCYW+LHS+DLL+GLE+    +H+    +L R V  TM SCQN GGGFGGG  Q+SHCAPTYAAVLALLI+GTEEAY+ IDRPALY+WFLARKH SGGFCMHDDGEVDVRGTYTVISIAS+LN+LTP+L A V +YLLSCQTYEGGFGGE  QEAHGGYVFCAFAAL+IL   +  DL SL+GW+ARRQM +EGGFQGRTNKLVDGCYSFWQGATA+LV+M L GE E  + VGWR  + G+   C     +P   T D +D G    D     D  ++  +  A++  +   E      G +  L+QHALQRYILHCAQALDGGLRDKP KPRDFYHTCYNLSGLSCAQWG           R     G  LVYGD+GNLL ITNP+YNIR++KV+RALRF+Y   P SH  LL
Sbjct:   31 CTSLLNSWCNLDQSSRGKLQASGLFNDSGDIRLLRERHVAYLMKGLTHLGPGFICLDASRPWLCYWILHSLDLLRGLESR---SHSIFRADLARKVTITMNSCQNSGGGFGGGPYQISHCAPTYAAVLALLILGTEEAYKTIDRPALYKWFLARKHLSGGFCMHDDGEVDVRGTYTVISIASMLNMLTPQLAAGVVEYLLSCQTYEGGFGGETDQEAHGGYVFCAFAALIILSETDGVDLFSLQGWIARRQMSVEGGFQGRTNKLVDGCYSFWQGATAILVEMALHGETETRKVVGWRKENDGRIVLC-----APQSYTEDLRDSGVSGKDFGDTTDLRSVCPRETAMKSDMPNIEPSCHVGGNLECLSQHALQRYILHCAQALDGGLRDKPDKPRDFYHTCYNLSGLSCAQWGQMDSLKESKNARGLNPCGHPLVYGDIGNLLEITNPIYNIRQDKVDRALRFFYREGPESHEVLL 499          
The following BLAST results are available for this feature:
BLAST of NO06G00620.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26121.13.300e-17163.31farnesyltransferase beta subunit [Nannochloropsis ... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G00620NO06G00620Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G00620.1NO06G00620.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G00620.1.cds1NO06G00620.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G00620.1.cds2NO06G00620.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G00620.1.cds3NO06G00620.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G00620.1.cds4NO06G00620.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G00620.1 ID=NO06G00620.1|Name=NO06G00620.1|organism=Nannochloropsis oceanica|type=mRNA|length=1401bp
ATGTGTGTGCGCCACTTGCGGTCATTGGAGAAGTTGGACGAACACGAGGC
CTCAGGCCTCCAAGCCGCCGGCTTCTTCAACGACGACGGCGAAGTGCGCC
TCCTCCGAAAGCAGCACCTTGACTATGTCATGCGGGGCCTGCGGTACCTG
GGGCCGGGCTTTATTTGCCTGGACGCGAGTCGACCCTGGCTGTGTTACTG
GATGCTCCACTCCATCGACCTCCTCAAGGGCCTCGAGACCACGGGCGAAG
CCGCCCACGCAGATGTGGACACGGAGCTCTTAAGACATGTGATGACTACC
ATGGCATCTTGTCAGAACGTCGGTGGAGGGTTTGGTGGGGGGACCCAGCA
GCTGTCGCACTGTGCGCCCACGTATGCAGCGGTGCTTGCCTTGTTGATTG
TGGGCACAGAGGAGGCTTACAGAATCATTGATCGACCCGCGCTTTACCGA
TGGTTCTTGGCTCGCAAGCATCCATCGGGTGGATTCTGCATGCACGACGA
CGGGGAGGTTGACGTCCGCGGCACGTACACTGTCATCTCCATCGCCTCCC
TCCTCAACCTCCTCACTCCTGAACTCACCGCGGACGTAGCCGACTACCTC
TTATCCTGCCAGACCTATGAGGGCGGGTTTGGTGGCGAGCCTGGGCAAGA
GGCTCACGGTGGCTATGTTTTCTGTGCCTTTGCAGCGCTGGTGATCTTGG
GGAGGGCGGAGGAGGCAGATCTGGTGTCGCTGGAAGGGTGGGTGGCCCGA
AGGCAGATGGAGATGGAGGGCGGGTTTCAGGGACGGACGAACAAGCTCGT
GGACGGGTGTTACTCGTTCTGGCAGGGCGCCACGGCCGTGTTGGTGGACA
TGGTCTTGAGTGGCGAGGGGGAGGCGGAGGAGGCGGTTGGCTGGAGGGGG
TCACTAGGCCAGGCTCAACCTTGCTCCTCTCGCCCGTCCTCTCCCTGCCT
CCAAACCGGCGATGGCAAAGACGGCGGCTCCCCCCGTCTTGACGAGGTCT
CTGCCGACGACGCAGCCAACATCAGCTATAAGACAGTGGCCATCCAGCCC
TCCTTGGACGTCGGCGAGCATGACACTCCCTCCCTCGGGCGTGTACCCGG
TCTCAACCAGCACGCTCTTCAGAGATACATTTTGCATTGCGCCCAGGCCC
TCGACGGCGGGCTCCGGGACAAACCGGGCAAGCCTCGCGACTTCTACCAC
ACTTGCTACAACTTGTCGGGGCTGAGCTGTGCGCAGTGGGGCCGGGCGGG
AGGGAAGGGAGGGACAGCACTCGTGTATGGTGACGTGGGGAATTTGCTGC
ATATTACCAACCCCGTGTATAACATCCGACGAGAAAAGGTGGAGCGAGCC
CTCCGCTTCTACTACACTGCACCTGCCTCCCACGGAGCATTACTGTCGTG
A
back to top

protein sequence of NO06G00620.1

>NO06G00620.1-protein ID=NO06G00620.1-protein|Name=NO06G00620.1|organism=Nannochloropsis oceanica|type=polypeptide|length=467bp
MCVRHLRSLEKLDEHEASGLQAAGFFNDDGEVRLLRKQHLDYVMRGLRYL
GPGFICLDASRPWLCYWMLHSIDLLKGLETTGEAAHADVDTELLRHVMTT
MASCQNVGGGFGGGTQQLSHCAPTYAAVLALLIVGTEEAYRIIDRPALYR
WFLARKHPSGGFCMHDDGEVDVRGTYTVISIASLLNLLTPELTADVADYL
LSCQTYEGGFGGEPGQEAHGGYVFCAFAALVILGRAEEADLVSLEGWVAR
RQMEMEGGFQGRTNKLVDGCYSFWQGATAVLVDMVLSGEGEAEEAVGWRG
SLGQAQPCSSRPSSPCLQTGDGKDGGSPRLDEVSADDAANISYKTVAIQP
SLDVGEHDTPSLGRVPGLNQHALQRYILHCAQALDGGLRDKPGKPRDFYH
TCYNLSGLSCAQWGRAGGKGGTALVYGDVGNLLHITNPVYNIRREKVERA
LRFYYTAPASHGALLS*
back to top

mRNA from alignment at chr6:232797..234884+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G00620.1 ID=NO06G00620.1|Name=NO06G00620.1|organism=Nannochloropsis oceanica|type=mRNA|length=2088bp|location=Sequence derived from alignment at chr6:232797..234884+ (Nannochloropsis oceanica)
ATGTGTGTGCGCCACTTGCGGTCATTGGAGAAGTTGGACGAAGTGAGTGA GTGCGTGCATGAGAATAGTCGCCCCCCTCCCTTACTCTCTGCCTTACCCC CCCACGTCCCAGCAGCATGCCACTGCTTCTGCTGCCCGGGGCACGAAGCG TTATGTGATGACTCTAATCATTTGCCTTATTCGTCTTTAGAGTTCCATTT TGCCTCCGCTTCTTCATTTTCTTTCAGAGCTTGCCGTCACGCATCCCCTC GCTCACATTCTATCCCCTTCCTTTCCCGTTCTCTGCCACTGTCACAGCAC GAGGCCTCAGGCCTCCAAGCCGCCGGCTTCTTCAACGACGACGGCGAAGT GCGCCTCCTCCGAAAGCAGCACCTTGACTATGTCATGCGGGGCCTGCGGT ACCTGGGGCCGGGCTTTATTTGCCTGGACGCGAGTCGACCCTGGCTGTGT TACTGGATGCTCCACTCCATCGACCTCCTCAAGGGCCTCGAGACCACGGG CGAAGCCGCCCACGCAGATGTGGACACGGAGCTCTTAAGACATGTGATGA CTACCATGGCATCTTGTCAGAACGTCGGTGGAGGGTTTGGTGGGGGGACC CAGCAGCTGTCGCACTGTGCGCCCACGTATGCAGCGGTGCTTGCCTTGTT GATTGTGGGCACAGAGGAGGCTTACAGAATCATTGATCGACCCGCGCTTT ACCGATGGTTCTTGGCTCGCAAGCATCCATCGGGTGGATTCTGCATGCAC GACGACGGGTACGTGTCAAAGTGTCCTGCGGTAGATGGTTGGGAGCCGCA AAGGCACGATGAACTGATGAAGAAGAGGAAGAAACCGTTTATGTATTGGT AGGTGAAGAAGTACATGTTGTATGTGGACAAGAGTAGAAGTCCTCTTCTT TCCTCGCCTCCTCCCGCAGACAAGCTCATCCCGCCCCACCCCTTTTCATT CCTGTTGCTTTCCGCCCCGCCTTATGACAGGGAGGTTGACGTCCGCGGCA CGTACACTGTCATCTCCATCGCCTCCCTCCTCAACCTCCTCACTCCTGAA CTCACCGCGGACGTAGCCGACTACCTCTTATCCTGCCAGACCTATGAGGG CGGGTTTGGTGGCGAGCCTGGGCAAGAGGCTCACGGTGGCTATGTTTTCT GTGCCTTTGCAGCGCTGGTGATCTTGGGGAGGGCGGAGGAGGCAGATCTG GTGTCGCTGGAAGGGTGGGTGGCCCGAAGGCAGATGGAGATGGAGGGCGG GTTTCAGGGACGGACGAACAAGCTCGTGGACGGGTGTTACTCGTTCTGGC AGGGCGCCACGGCCGTGTTGGTGGACATGGTCTTGAGTGGCGAGGGGGAG GCGGAGGAGGCGGTTGGCTGGAGGGGGTCACTAGGCCAGGCTCAACCTTG CTCCTCTCGCCCGTCCTCTCCCTGCCTCCAAACCGGCGATGGCAAAGACG GCGGCTCCCCCCGTCTTGACGAGGTCTCTGCCGACGACGCAGCCAACATC AGCTATAAGACAGTGGCCATCCAGCCCTCCTTGGACGTCGGCGAGCATGA CACTCCCTCCCTCGGGCGTGTACCCGGTCTCAACCAGCACGCTCTTCAGA GATACATTTTGCATTGCGCCCAGGCCCTCGACGGCGGGCTCCGGGACAAA CCGGGCAAGCCTCGCGACTTCTACCACACTTGCTACAACTTGTCGGGGCT GAGCTGTGCGCAGTGGGGCCGGGCGGGAGGGAAGGGAGGGACAGCACTCG TGTATGGTGACGTGGGGAATTTGCTGGTGAGTTTGACAGGGCATGGACGG GAGGCGGGAAGAAGGAATCGAGATGAGAAGATGATAGGGTGTTCACGAAA AAGGAGACCAAGGGCATATGGAAGGAGGCACGTGGATTACGCGTCTTAGG ACGTGTCTGACATGCATAATCGATAGGACTCTGAACCACTCTCACTTCTC TGGCCTTCCACTTCCCATCCGCTCCCTCAACCACAGCATATTACCAACCC CGTGTATAACATCCGACGAGAAAAGGTGGAGCGAGCCCTCCGCTTCTACT ACACTGCACCTGCCTCCCACGGAGCATTACTGTCGTGA
back to top

Coding sequence (CDS) from alignment at chr6:232797..234884+

>NO06G00620.1 ID=NO06G00620.1|Name=NO06G00620.1|organism=Nannochloropsis oceanica|type=CDS|length=1401bp|location=Sequence derived from alignment at chr6:232797..234884+ (Nannochloropsis oceanica)
ATGTGTGTGCGCCACTTGCGGTCATTGGAGAAGTTGGACGAACACGAGGC
CTCAGGCCTCCAAGCCGCCGGCTTCTTCAACGACGACGGCGAAGTGCGCC
TCCTCCGAAAGCAGCACCTTGACTATGTCATGCGGGGCCTGCGGTACCTG
GGGCCGGGCTTTATTTGCCTGGACGCGAGTCGACCCTGGCTGTGTTACTG
GATGCTCCACTCCATCGACCTCCTCAAGGGCCTCGAGACCACGGGCGAAG
CCGCCCACGCAGATGTGGACACGGAGCTCTTAAGACATGTGATGACTACC
ATGGCATCTTGTCAGAACGTCGGTGGAGGGTTTGGTGGGGGGACCCAGCA
GCTGTCGCACTGTGCGCCCACGTATGCAGCGGTGCTTGCCTTGTTGATTG
TGGGCACAGAGGAGGCTTACAGAATCATTGATCGACCCGCGCTTTACCGA
TGGTTCTTGGCTCGCAAGCATCCATCGGGTGGATTCTGCATGCACGACGA
CGGGGAGGTTGACGTCCGCGGCACGTACACTGTCATCTCCATCGCCTCCC
TCCTCAACCTCCTCACTCCTGAACTCACCGCGGACGTAGCCGACTACCTC
TTATCCTGCCAGACCTATGAGGGCGGGTTTGGTGGCGAGCCTGGGCAAGA
GGCTCACGGTGGCTATGTTTTCTGTGCCTTTGCAGCGCTGGTGATCTTGG
GGAGGGCGGAGGAGGCAGATCTGGTGTCGCTGGAAGGGTGGGTGGCCCGA
AGGCAGATGGAGATGGAGGGCGGGTTTCAGGGACGGACGAACAAGCTCGT
GGACGGGTGTTACTCGTTCTGGCAGGGCGCCACGGCCGTGTTGGTGGACA
TGGTCTTGAGTGGCGAGGGGGAGGCGGAGGAGGCGGTTGGCTGGAGGGGG
TCACTAGGCCAGGCTCAACCTTGCTCCTCTCGCCCGTCCTCTCCCTGCCT
CCAAACCGGCGATGGCAAAGACGGCGGCTCCCCCCGTCTTGACGAGGTCT
CTGCCGACGACGCAGCCAACATCAGCTATAAGACAGTGGCCATCCAGCCC
TCCTTGGACGTCGGCGAGCATGACACTCCCTCCCTCGGGCGTGTACCCGG
TCTCAACCAGCACGCTCTTCAGAGATACATTTTGCATTGCGCCCAGGCCC
TCGACGGCGGGCTCCGGGACAAACCGGGCAAGCCTCGCGACTTCTACCAC
ACTTGCTACAACTTGTCGGGGCTGAGCTGTGCGCAGTGGGGCCGGGCGGG
AGGGAAGGGAGGGACAGCACTCGTGTATGGTGACGTGGGGAATTTGCTGC
ATATTACCAACCCCGTGTATAACATCCGACGAGAAAAGGTGGAGCGAGCC
CTCCGCTTCTACTACACTGCACCTGCCTCCCACGGAGCATTACTGTCGTG
A
back to top
Synonyms
Publications