|
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr6 | genome | chr6:232797..234884 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO06G00620.1 vs.
Match: EWM26121.1 (farnesyltransferase beta subunit [Nannochloropsis gaditana]) HSP 1 Score: 610.9 bits (1574), Expect = 3.300e-171 Identity = 302/477 (63.31%), Postives = 353/477 (74.00%), Query Frame = 0
Query: 2 CVRHLRSLEKLDEHEASGLQAAGFFNDDGEVRLLRKQHLDYVMRGLRYLGPGFICLDASRPWLCYWMLHSIDLLKGLETTGEAAHADVDTELLRHVMTTMASCQNVGGGFGGGTQQLSHCAPTYAAVLALLIVGTEEAYRIIDRPALYRWFLARKHPSGGFCMHDDGEVDVRGTYTVISIASLLNLLTPELTADVADYLLSCQTYEGGFGGEPGQEAHGGYVFCAFAALVILGRAEEADLVSLEGWVARRQMEMEGGFQGRTNKLVDGCYSFWQGATAVLVDMVLSGEGEAEEAVGWR-GSLGQAQPCSSRPSSPCLQTGDGKDGGSPRLDEVSADDAANISYKTVAIQPSLDVGEHDTPSLGRVPGLNQHALQRYILHCAQALDGGLRDKPGKPRDFYHTCYNLSGLSCAQWG-----------RAGGKGGTALVYGDVGNLLHITNPVYNIRREKVERALRFYY-TAPASHGALL 466
C L S LD+ LQA+G FND G++RLLR++H+ Y+M+GL +LGPGFICLDASRPWLCYW+LHS+DLL+GLE+ +H+ +L R V TM SCQN GGGFGGG Q+SHCAPTYAAVLALLI+GTEEAY+ IDRPALY+WFLARKH SGGFCMHDDGEVDVRGTYTVISIAS+LN+LTP+L A V +YLLSCQTYEGGFGGE QEAHGGYVFCAFAAL+IL + DL SL+GW+ARRQM +EGGFQGRTNKLVDGCYSFWQGATA+LV+M L GE E + VGWR + G+ C +P T D +D G D D ++ + A++ + E G + L+QHALQRYILHCAQALDGGLRDKP KPRDFYHTCYNLSGLSCAQWG R G LVYGD+GNLL ITNP+YNIR++KV+RALRF+Y P SH LL
Sbjct: 31 CTSLLNSWCNLDQSSRGKLQASGLFNDSGDIRLLRERHVAYLMKGLTHLGPGFICLDASRPWLCYWILHSLDLLRGLESR---SHSIFRADLARKVTITMNSCQNSGGGFGGGPYQISHCAPTYAAVLALLILGTEEAYKTIDRPALYKWFLARKHLSGGFCMHDDGEVDVRGTYTVISIASMLNMLTPQLAAGVVEYLLSCQTYEGGFGGETDQEAHGGYVFCAFAALIILSETDGVDLFSLQGWIARRQMSVEGGFQGRTNKLVDGCYSFWQGATAILVEMALHGETETRKVVGWRKENDGRIVLC-----APQSYTEDLRDSGVSGKDFGDTTDLRSVCPRETAMKSDMPNIEPSCHVGGNLECLSQHALQRYILHCAQALDGGLRDKPDKPRDFYHTCYNLSGLSCAQWGQMDSLKESKNARGLNPCGHPLVYGDIGNLLEITNPIYNIRQDKVDRALRFFYREGPESHEVLL 499
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO06G00620.1 ID=NO06G00620.1|Name=NO06G00620.1|organism=Nannochloropsis oceanica|type=mRNA|length=1401bp ATGTGTGTGCGCCACTTGCGGTCATTGGAGAAGTTGGACGAACACGAGGC CTCAGGCCTCCAAGCCGCCGGCTTCTTCAACGACGACGGCGAAGTGCGCC TCCTCCGAAAGCAGCACCTTGACTATGTCATGCGGGGCCTGCGGTACCTG GGGCCGGGCTTTATTTGCCTGGACGCGAGTCGACCCTGGCTGTGTTACTG GATGCTCCACTCCATCGACCTCCTCAAGGGCCTCGAGACCACGGGCGAAG CCGCCCACGCAGATGTGGACACGGAGCTCTTAAGACATGTGATGACTACC ATGGCATCTTGTCAGAACGTCGGTGGAGGGTTTGGTGGGGGGACCCAGCA GCTGTCGCACTGTGCGCCCACGTATGCAGCGGTGCTTGCCTTGTTGATTG TGGGCACAGAGGAGGCTTACAGAATCATTGATCGACCCGCGCTTTACCGA TGGTTCTTGGCTCGCAAGCATCCATCGGGTGGATTCTGCATGCACGACGA CGGGGAGGTTGACGTCCGCGGCACGTACACTGTCATCTCCATCGCCTCCC TCCTCAACCTCCTCACTCCTGAACTCACCGCGGACGTAGCCGACTACCTC TTATCCTGCCAGACCTATGAGGGCGGGTTTGGTGGCGAGCCTGGGCAAGA GGCTCACGGTGGCTATGTTTTCTGTGCCTTTGCAGCGCTGGTGATCTTGG GGAGGGCGGAGGAGGCAGATCTGGTGTCGCTGGAAGGGTGGGTGGCCCGA AGGCAGATGGAGATGGAGGGCGGGTTTCAGGGACGGACGAACAAGCTCGT GGACGGGTGTTACTCGTTCTGGCAGGGCGCCACGGCCGTGTTGGTGGACA TGGTCTTGAGTGGCGAGGGGGAGGCGGAGGAGGCGGTTGGCTGGAGGGGG TCACTAGGCCAGGCTCAACCTTGCTCCTCTCGCCCGTCCTCTCCCTGCCT CCAAACCGGCGATGGCAAAGACGGCGGCTCCCCCCGTCTTGACGAGGTCT CTGCCGACGACGCAGCCAACATCAGCTATAAGACAGTGGCCATCCAGCCC TCCTTGGACGTCGGCGAGCATGACACTCCCTCCCTCGGGCGTGTACCCGG TCTCAACCAGCACGCTCTTCAGAGATACATTTTGCATTGCGCCCAGGCCC TCGACGGCGGGCTCCGGGACAAACCGGGCAAGCCTCGCGACTTCTACCAC ACTTGCTACAACTTGTCGGGGCTGAGCTGTGCGCAGTGGGGCCGGGCGGG AGGGAAGGGAGGGACAGCACTCGTGTATGGTGACGTGGGGAATTTGCTGC ATATTACCAACCCCGTGTATAACATCCGACGAGAAAAGGTGGAGCGAGCC CTCCGCTTCTACTACACTGCACCTGCCTCCCACGGAGCATTACTGTCGTG A back to topprotein sequence of NO06G00620.1 >NO06G00620.1-protein ID=NO06G00620.1-protein|Name=NO06G00620.1|organism=Nannochloropsis oceanica|type=polypeptide|length=467bp MCVRHLRSLEKLDEHEASGLQAAGFFNDDGEVRLLRKQHLDYVMRGLRYL GPGFICLDASRPWLCYWMLHSIDLLKGLETTGEAAHADVDTELLRHVMTT MASCQNVGGGFGGGTQQLSHCAPTYAAVLALLIVGTEEAYRIIDRPALYR WFLARKHPSGGFCMHDDGEVDVRGTYTVISIASLLNLLTPELTADVADYL LSCQTYEGGFGGEPGQEAHGGYVFCAFAALVILGRAEEADLVSLEGWVAR RQMEMEGGFQGRTNKLVDGCYSFWQGATAVLVDMVLSGEGEAEEAVGWRG SLGQAQPCSSRPSSPCLQTGDGKDGGSPRLDEVSADDAANISYKTVAIQP SLDVGEHDTPSLGRVPGLNQHALQRYILHCAQALDGGLRDKPGKPRDFYH TCYNLSGLSCAQWGRAGGKGGTALVYGDVGNLLHITNPVYNIRREKVERA LRFYYTAPASHGALLS* back to topmRNA from alignment at chr6:232797..234884+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO06G00620.1 ID=NO06G00620.1|Name=NO06G00620.1|organism=Nannochloropsis oceanica|type=mRNA|length=2088bp|location=Sequence derived from alignment at chr6:232797..234884+ (Nannochloropsis oceanica) ATGTGTGTGCGCCACTTGCGGTCATTGGAGAAGTTGGACGAAGTGAGTGA
GTGCGTGCATGAGAATAGTCGCCCCCCTCCCTTACTCTCTGCCTTACCCC
CCCACGTCCCAGCAGCATGCCACTGCTTCTGCTGCCCGGGGCACGAAGCG
TTATGTGATGACTCTAATCATTTGCCTTATTCGTCTTTAGAGTTCCATTT
TGCCTCCGCTTCTTCATTTTCTTTCAGAGCTTGCCGTCACGCATCCCCTC
GCTCACATTCTATCCCCTTCCTTTCCCGTTCTCTGCCACTGTCACAGCAC
GAGGCCTCAGGCCTCCAAGCCGCCGGCTTCTTCAACGACGACGGCGAAGT
GCGCCTCCTCCGAAAGCAGCACCTTGACTATGTCATGCGGGGCCTGCGGT
ACCTGGGGCCGGGCTTTATTTGCCTGGACGCGAGTCGACCCTGGCTGTGT
TACTGGATGCTCCACTCCATCGACCTCCTCAAGGGCCTCGAGACCACGGG
CGAAGCCGCCCACGCAGATGTGGACACGGAGCTCTTAAGACATGTGATGA
CTACCATGGCATCTTGTCAGAACGTCGGTGGAGGGTTTGGTGGGGGGACC
CAGCAGCTGTCGCACTGTGCGCCCACGTATGCAGCGGTGCTTGCCTTGTT
GATTGTGGGCACAGAGGAGGCTTACAGAATCATTGATCGACCCGCGCTTT
ACCGATGGTTCTTGGCTCGCAAGCATCCATCGGGTGGATTCTGCATGCAC
GACGACGGGTACGTGTCAAAGTGTCCTGCGGTAGATGGTTGGGAGCCGCA
AAGGCACGATGAACTGATGAAGAAGAGGAAGAAACCGTTTATGTATTGGT
AGGTGAAGAAGTACATGTTGTATGTGGACAAGAGTAGAAGTCCTCTTCTT
TCCTCGCCTCCTCCCGCAGACAAGCTCATCCCGCCCCACCCCTTTTCATT
CCTGTTGCTTTCCGCCCCGCCTTATGACAGGGAGGTTGACGTCCGCGGCA
CGTACACTGTCATCTCCATCGCCTCCCTCCTCAACCTCCTCACTCCTGAA
CTCACCGCGGACGTAGCCGACTACCTCTTATCCTGCCAGACCTATGAGGG
CGGGTTTGGTGGCGAGCCTGGGCAAGAGGCTCACGGTGGCTATGTTTTCT
GTGCCTTTGCAGCGCTGGTGATCTTGGGGAGGGCGGAGGAGGCAGATCTG
GTGTCGCTGGAAGGGTGGGTGGCCCGAAGGCAGATGGAGATGGAGGGCGG
GTTTCAGGGACGGACGAACAAGCTCGTGGACGGGTGTTACTCGTTCTGGC
AGGGCGCCACGGCCGTGTTGGTGGACATGGTCTTGAGTGGCGAGGGGGAG
GCGGAGGAGGCGGTTGGCTGGAGGGGGTCACTAGGCCAGGCTCAACCTTG
CTCCTCTCGCCCGTCCTCTCCCTGCCTCCAAACCGGCGATGGCAAAGACG
GCGGCTCCCCCCGTCTTGACGAGGTCTCTGCCGACGACGCAGCCAACATC
AGCTATAAGACAGTGGCCATCCAGCCCTCCTTGGACGTCGGCGAGCATGA
CACTCCCTCCCTCGGGCGTGTACCCGGTCTCAACCAGCACGCTCTTCAGA
GATACATTTTGCATTGCGCCCAGGCCCTCGACGGCGGGCTCCGGGACAAA
CCGGGCAAGCCTCGCGACTTCTACCACACTTGCTACAACTTGTCGGGGCT
GAGCTGTGCGCAGTGGGGCCGGGCGGGAGGGAAGGGAGGGACAGCACTCG
TGTATGGTGACGTGGGGAATTTGCTGGTGAGTTTGACAGGGCATGGACGG
GAGGCGGGAAGAAGGAATCGAGATGAGAAGATGATAGGGTGTTCACGAAA
AAGGAGACCAAGGGCATATGGAAGGAGGCACGTGGATTACGCGTCTTAGG
ACGTGTCTGACATGCATAATCGATAGGACTCTGAACCACTCTCACTTCTC
TGGCCTTCCACTTCCCATCCGCTCCCTCAACCACAGCATATTACCAACCC
CGTGTATAACATCCGACGAGAAAAGGTGGAGCGAGCCCTCCGCTTCTACT
ACACTGCACCTGCCTCCCACGGAGCATTACTGTCGTGA back to topCoding sequence (CDS) from alignment at chr6:232797..234884+ >NO06G00620.1 ID=NO06G00620.1|Name=NO06G00620.1|organism=Nannochloropsis oceanica|type=CDS|length=1401bp|location=Sequence derived from alignment at chr6:232797..234884+ (Nannochloropsis oceanica) ATGTGTGTGCGCCACTTGCGGTCATTGGAGAAGTTGGACGAACACGAGGC CTCAGGCCTCCAAGCCGCCGGCTTCTTCAACGACGACGGCGAAGTGCGCC TCCTCCGAAAGCAGCACCTTGACTATGTCATGCGGGGCCTGCGGTACCTG GGGCCGGGCTTTATTTGCCTGGACGCGAGTCGACCCTGGCTGTGTTACTG GATGCTCCACTCCATCGACCTCCTCAAGGGCCTCGAGACCACGGGCGAAG CCGCCCACGCAGATGTGGACACGGAGCTCTTAAGACATGTGATGACTACC ATGGCATCTTGTCAGAACGTCGGTGGAGGGTTTGGTGGGGGGACCCAGCA GCTGTCGCACTGTGCGCCCACGTATGCAGCGGTGCTTGCCTTGTTGATTG TGGGCACAGAGGAGGCTTACAGAATCATTGATCGACCCGCGCTTTACCGA TGGTTCTTGGCTCGCAAGCATCCATCGGGTGGATTCTGCATGCACGACGA CGGGGAGGTTGACGTCCGCGGCACGTACACTGTCATCTCCATCGCCTCCC TCCTCAACCTCCTCACTCCTGAACTCACCGCGGACGTAGCCGACTACCTC TTATCCTGCCAGACCTATGAGGGCGGGTTTGGTGGCGAGCCTGGGCAAGA GGCTCACGGTGGCTATGTTTTCTGTGCCTTTGCAGCGCTGGTGATCTTGG GGAGGGCGGAGGAGGCAGATCTGGTGTCGCTGGAAGGGTGGGTGGCCCGA AGGCAGATGGAGATGGAGGGCGGGTTTCAGGGACGGACGAACAAGCTCGT GGACGGGTGTTACTCGTTCTGGCAGGGCGCCACGGCCGTGTTGGTGGACA TGGTCTTGAGTGGCGAGGGGGAGGCGGAGGAGGCGGTTGGCTGGAGGGGG TCACTAGGCCAGGCTCAACCTTGCTCCTCTCGCCCGTCCTCTCCCTGCCT CCAAACCGGCGATGGCAAAGACGGCGGCTCCCCCCGTCTTGACGAGGTCT CTGCCGACGACGCAGCCAACATCAGCTATAAGACAGTGGCCATCCAGCCC TCCTTGGACGTCGGCGAGCATGACACTCCCTCCCTCGGGCGTGTACCCGG TCTCAACCAGCACGCTCTTCAGAGATACATTTTGCATTGCGCCCAGGCCC TCGACGGCGGGCTCCGGGACAAACCGGGCAAGCCTCGCGACTTCTACCAC ACTTGCTACAACTTGTCGGGGCTGAGCTGTGCGCAGTGGGGCCGGGCGGG AGGGAAGGGAGGGACAGCACTCGTGTATGGTGACGTGGGGAATTTGCTGC ATATTACCAACCCCGTGTATAACATCCGACGAGAAAAGGTGGAGCGAGCC CTCCGCTTCTACTACACTGCACCTGCCTCCCACGGAGCATTACTGTCGTG A back to top
|