NO06G00610.1, NO06G00610.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G00610.1
Unique NameNO06G00610.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1368
Alignment locationchr6:230887..232397 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:230887..232397 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO06G00610.1 vs.
Match: EWM26096.1 (hypothetical protein Naga_100014g63 [Nannochloropsis gaditana])

HSP 1 Score: 404.1 bits (1037), Expect = 5.900e-109
Identity = 232/355 (65.35%), Postives = 264/355 (74.37%), Query Frame = 0 
Query:   98 PIVAPSPETSTAPTQRLVGSE-----GMATISPFRSGSTYNSGAPALGVDPTRPPSYSPEESAFVEMKVDRMLVRKIDLWPPEEIFELMPLLMKGTYFEYALVQRLEYDQRLDGTPLVPSLASSSSKERRRLEHSRSFLASLKYSEEQRLARQWIEGLLEAATESTEAMDEKVFELLAYEGGVLVGPVQEALATMLRRLRSMSPDEKTLTQVVIETLQKRVEAEVQTQEMPFVRLLALLLRLPSPEDRERILRTELRNSRVVEEFAAYLEEGADYVARLRLGPYSLPDDTPEEMKKILAILRGFTRTGRKGEREGVVKTAAGHAAMA----SSSVSRLGIVDVEELRGRGEGGEG 444
            P  A S ET     + LV +E     G  T   F    + +S      +  + P  Y+ EE+  VE K+D ML RKIDLWPPEEIFEL+PLL+K + FEYA+ +RLE D RLDGTPLVPSL    SK RRRLEHSRSFLASLKYSE+QRLARQWIEGLLEAATESTEAMDE+VFELL YE GVLV PVQEAL  MLRRLRSMSPDEKTLTQ V+ETLQKRVEAEV+T+E PFVRLLALLLRL S +DRER+LRTELRNSRV+EEFAAYLEEGADYVARLRLGP SLP+DT +EM+KILAILR FT+TG     +G  + AA     +       + R  +VDVEE+R   EGGEG
Sbjct:   75 PRTAASDETGLGGRRFLVSTEMGTASGRETTPDFAQSKSSDSMGNEGNLTISEPLQYTTEEATLVETKIDGMLTRKIDLWPPEEIFELLPLLLKSSVFEYAIDKRLEQDLRLDGTPLVPSLGRPESKFRRRLEHSRSFLASLKYSEQQRLARQWIEGLLEAATESTEAMDERVFELLTYENGVLVEPVQEALEDMLRRLRSMSPDEKTLTQAVLETLQKRVEAEVRTRETPFVRLLALLLRLHSRDDRERVLRTELRNSRVIEEFAAYLEEGADYVARLRLGPCSLPEDTSDEMQKILAILRDFTQTGAGEGAQGWTRGAAPSVQPSFQPRPEDIGRRAVVDVEEVR---EGGEG 426
The following BLAST results are available for this feature:
BLAST of NO06G00610.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26096.15.900e-10965.35hypothetical protein Naga_100014g63 [Nannochlorops... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G00610NO06G00610Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G00610.1NO06G00610.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G00610.1.cds1NO06G00610.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G00610.1.cds2NO06G00610.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G00610.1 ID=NO06G00610.1|Name=NO06G00610.1|organism=Nannochloropsis oceanica|type=mRNA|length=1368bp
ATGAGGAGGAGATACGACTTGGGAGTCCGAATGCGGGCCTTTCTCCTCCT
GCTGCATGTTCTAGGGGAAGCCTTCACAATATCCTCCTCCTTCATGCTGT
GTCCCGCTCGTCCAATCAGACCCACACTAGTAGCTACTCCCGTCCATCGA
CCAGAAGCATGCCCGACGACACCGCAACACCTCTTGAACTTCCTGGGATC
AGTCAGACTGTCCTTATGCTTTCGATTGTCTGCGTCCTTTGACAATGATG
CGGACGGTGGGAATAGTGAAAGTAATGAGGAAGACAGCCACCCGATAGTG
GCACCGTCCCCGGAGACGTCCACCGCCCCAACCCAGAGGTTGGTAGGCTC
CGAAGGGATGGCGACGATCTCTCCCTTTCGAAGCGGTAGCACTTACAACT
CCGGTGCACCTGCCCTGGGAGTAGATCCGACCCGGCCACCGTCGTACTCC
CCGGAAGAGTCCGCTTTCGTGGAGATGAAGGTGGACCGAATGCTTGTGCG
GAAGATTGATCTATGGCCGCCCGAGGAGATATTCGAGCTGATGCCCTTGC
TCATGAAGGGCACATACTTTGAATACGCCCTCGTCCAACGCCTAGAGTAC
GATCAACGGCTGGACGGGACACCCCTTGTTCCCTCCCTCGCCTCATCCAG
CAGCAAGGAACGACGTCGCCTCGAACACTCCCGCTCTTTCCTGGCCAGTT
TGAAATACTCAGAGGAGCAGCGCCTGGCCCGACAATGGATTGAAGGGCTC
CTAGAAGCAGCGACCGAAAGCACAGAGGCCATGGACGAGAAGGTGTTTGA
GTTGCTGGCTTACGAGGGGGGTGTGCTGGTGGGGCCCGTGCAGGAGGCCC
TGGCCACCATGCTCCGCCGCCTCCGCTCCATGTCCCCCGACGAAAAGACC
TTGACTCAAGTCGTCATTGAGACGCTCCAAAAGCGCGTGGAGGCGGAGGT
CCAAACCCAGGAAATGCCCTTTGTCCGCCTCCTTGCCCTCCTGCTTCGCC
TGCCCTCACCTGAAGACCGGGAGCGGATCCTACGGACGGAGCTTCGCAAC
AGCCGCGTGGTGGAGGAGTTTGCGGCTTACCTTGAGGAGGGGGCTGATTA
CGTAGCACGGCTACGCCTAGGCCCGTACAGCCTCCCTGATGACACGCCGG
AGGAGATGAAGAAGATTCTGGCTATTCTCAGGGGGTTCACTCGGACGGGG
AGGAAGGGAGAAAGGGAGGGAGTGGTGAAGACGGCGGCGGGCCATGCGGC
GATGGCCTCGTCCTCCGTGTCAAGATTAGGCATTGTGGACGTAGAGGAGT
TGAGGGGAAGAGGGGAAGGAGGGGAGGGGGGCTTGCCGCCGCCGCCGCCG
ACGACGACGACGAGATGA
back to top

protein sequence of NO06G00610.1

>NO06G00610.1-protein ID=NO06G00610.1-protein|Name=NO06G00610.1|organism=Nannochloropsis oceanica|type=polypeptide|length=456bp
MRRRYDLGVRMRAFLLLLHVLGEAFTISSSFMLCPARPIRPTLVATPVHR
PEACPTTPQHLLNFLGSVRLSLCFRLSASFDNDADGGNSESNEEDSHPIV
APSPETSTAPTQRLVGSEGMATISPFRSGSTYNSGAPALGVDPTRPPSYS
PEESAFVEMKVDRMLVRKIDLWPPEEIFELMPLLMKGTYFEYALVQRLEY
DQRLDGTPLVPSLASSSSKERRRLEHSRSFLASLKYSEEQRLARQWIEGL
LEAATESTEAMDEKVFELLAYEGGVLVGPVQEALATMLRRLRSMSPDEKT
LTQVVIETLQKRVEAEVQTQEMPFVRLLALLLRLPSPEDRERILRTELRN
SRVVEEFAAYLEEGADYVARLRLGPYSLPDDTPEEMKKILAILRGFTRTG
RKGEREGVVKTAAGHAAMASSSVSRLGIVDVEELRGRGEGGEGGLPPPPP
TTTTR*
back to top

mRNA from alignment at chr6:230887..232397-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G00610.1 ID=NO06G00610.1|Name=NO06G00610.1|organism=Nannochloropsis oceanica|type=mRNA|length=1511bp|location=Sequence derived from alignment at chr6:230887..232397- (Nannochloropsis oceanica)
ATGAGGAGGAGATACGACTTGGGAGTCCGAATGCGGGCCTTTCTCCTCCT
GCTGCATGTTCTAGGGGAAGCCTTCACAATATCCTCCTCCTTCATGCTGT
GTCCCGCTCGTCCAATCAGACCCACACTAGTAGCTACTCCCGTCCATCGA
CCAGAAGCATGCCCGACGACACCGCAACACCTCTTGAACTTCCTGGGATC
AGTCAGACTGTCCTTATGCTTTCGATTGTCTGCGTCCTTTGACAATGATG
CGGACGGTGGGAATAGTGAAAGTAATGAGGAAGACAGCCACCCGATAGTG
GCACCGTCCCCGGAGACGTCCACCGCCCCAACCCAGAGGTTGGTAGGCTC
CGAAGGGATGGCGACGATCTCTCCCTTTCGAAGCGGTAGCACTTACAACT
CCGGTGCACCTGCCCTGGGAGTAGATCCGACCCGGCCACCGTCGTACTCC
CCGGAAGAGTCCGCTTTCGTGGAGATGAAGGTGGACCGAATGCTTGTGCG
GAAGATTGATCTATGGCCGCCCGAGGAGATATTCGAGCTGATGCCCTTGC
TCATGAAGGTGAGCGAGAATATTGAAAAAATTAGGGATGGGGGAAAAGAG
GGAGAGAGATATGGAGAATTGTCCAGACGGCGAGATCAAGACCACTCACT
CACTCACCGACGCCTCTTTTTGCTGACACTCCTGCACACAATCACGCACA
GGGCACATACTTTGAATACGCCCTCGTCCAACGCCTAGAGTACGATCAAC
GGCTGGACGGGACACCCCTTGTTCCCTCCCTCGCCTCATCCAGCAGCAAG
GAACGACGTCGCCTCGAACACTCCCGCTCTTTCCTGGCCAGTTTGAAATA
CTCAGAGGAGCAGCGCCTGGCCCGACAATGGATTGAAGGGCTCCTAGAAG
CAGCGACCGAAAGCACAGAGGCCATGGACGAGAAGGTGTTTGAGTTGCTG
GCTTACGAGGGGGGTGTGCTGGTGGGGCCCGTGCAGGAGGCCCTGGCCAC
CATGCTCCGCCGCCTCCGCTCCATGTCCCCCGACGAAAAGACCTTGACTC
AAGTCGTCATTGAGACGCTCCAAAAGCGCGTGGAGGCGGAGGTCCAAACC
CAGGAAATGCCCTTTGTCCGCCTCCTTGCCCTCCTGCTTCGCCTGCCCTC
ACCTGAAGACCGGGAGCGGATCCTACGGACGGAGCTTCGCAACAGCCGCG
TGGTGGAGGAGTTTGCGGCTTACCTTGAGGAGGGGGCTGATTACGTAGCA
CGGCTACGCCTAGGCCCGTACAGCCTCCCTGATGACACGCCGGAGGAGAT
GAAGAAGATTCTGGCTATTCTCAGGGGGTTCACTCGGACGGGGAGGAAGG
GAGAAAGGGAGGGAGTGGTGAAGACGGCGGCGGGCCATGCGGCGATGGCC
TCGTCCTCCGTGTCAAGATTAGGCATTGTGGACGTAGAGGAGTTGAGGGG
AAGAGGGGAAGGAGGGGAGGGGGGCTTGCCGCCGCCGCCGCCGACGACGA
CGACGAGATGA
back to top

Coding sequence (CDS) from alignment at chr6:230887..232397-

>NO06G00610.1 ID=NO06G00610.1|Name=NO06G00610.1|organism=Nannochloropsis oceanica|type=CDS|length=1368bp|location=Sequence derived from alignment at chr6:230887..232397- (Nannochloropsis oceanica)
ATGAGGAGGAGATACGACTTGGGAGTCCGAATGCGGGCCTTTCTCCTCCT
GCTGCATGTTCTAGGGGAAGCCTTCACAATATCCTCCTCCTTCATGCTGT
GTCCCGCTCGTCCAATCAGACCCACACTAGTAGCTACTCCCGTCCATCGA
CCAGAAGCATGCCCGACGACACCGCAACACCTCTTGAACTTCCTGGGATC
AGTCAGACTGTCCTTATGCTTTCGATTGTCTGCGTCCTTTGACAATGATG
CGGACGGTGGGAATAGTGAAAGTAATGAGGAAGACAGCCACCCGATAGTG
GCACCGTCCCCGGAGACGTCCACCGCCCCAACCCAGAGGTTGGTAGGCTC
CGAAGGGATGGCGACGATCTCTCCCTTTCGAAGCGGTAGCACTTACAACT
CCGGTGCACCTGCCCTGGGAGTAGATCCGACCCGGCCACCGTCGTACTCC
CCGGAAGAGTCCGCTTTCGTGGAGATGAAGGTGGACCGAATGCTTGTGCG
GAAGATTGATCTATGGCCGCCCGAGGAGATATTCGAGCTGATGCCCTTGC
TCATGAAGGGCACATACTTTGAATACGCCCTCGTCCAACGCCTAGAGTAC
GATCAACGGCTGGACGGGACACCCCTTGTTCCCTCCCTCGCCTCATCCAG
CAGCAAGGAACGACGTCGCCTCGAACACTCCCGCTCTTTCCTGGCCAGTT
TGAAATACTCAGAGGAGCAGCGCCTGGCCCGACAATGGATTGAAGGGCTC
CTAGAAGCAGCGACCGAAAGCACAGAGGCCATGGACGAGAAGGTGTTTGA
GTTGCTGGCTTACGAGGGGGGTGTGCTGGTGGGGCCCGTGCAGGAGGCCC
TGGCCACCATGCTCCGCCGCCTCCGCTCCATGTCCCCCGACGAAAAGACC
TTGACTCAAGTCGTCATTGAGACGCTCCAAAAGCGCGTGGAGGCGGAGGT
CCAAACCCAGGAAATGCCCTTTGTCCGCCTCCTTGCCCTCCTGCTTCGCC
TGCCCTCACCTGAAGACCGGGAGCGGATCCTACGGACGGAGCTTCGCAAC
AGCCGCGTGGTGGAGGAGTTTGCGGCTTACCTTGAGGAGGGGGCTGATTA
CGTAGCACGGCTACGCCTAGGCCCGTACAGCCTCCCTGATGACACGCCGG
AGGAGATGAAGAAGATTCTGGCTATTCTCAGGGGGTTCACTCGGACGGGG
AGGAAGGGAGAAAGGGAGGGAGTGGTGAAGACGGCGGCGGGCCATGCGGC
GATGGCCTCGTCCTCCGTGTCAAGATTAGGCATTGTGGACGTAGAGGAGT
TGAGGGGAAGAGGGGAAGGAGGGGAGGGGGGCTTGCCGCCGCCGCCGCCG
ACGACGACGACGAGATGA
back to top
Synonyms
Publications