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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr6 | genome | chr6:230887..232397 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO06G00610.1 vs.
Match: EWM26096.1 (hypothetical protein Naga_100014g63 [Nannochloropsis gaditana]) HSP 1 Score: 404.1 bits (1037), Expect = 5.900e-109 Identity = 232/355 (65.35%), Postives = 264/355 (74.37%), Query Frame = 0
Query: 98 PIVAPSPETSTAPTQRLVGSE-----GMATISPFRSGSTYNSGAPALGVDPTRPPSYSPEESAFVEMKVDRMLVRKIDLWPPEEIFELMPLLMKGTYFEYALVQRLEYDQRLDGTPLVPSLASSSSKERRRLEHSRSFLASLKYSEEQRLARQWIEGLLEAATESTEAMDEKVFELLAYEGGVLVGPVQEALATMLRRLRSMSPDEKTLTQVVIETLQKRVEAEVQTQEMPFVRLLALLLRLPSPEDRERILRTELRNSRVVEEFAAYLEEGADYVARLRLGPYSLPDDTPEEMKKILAILRGFTRTGRKGEREGVVKTAAGHAAMA----SSSVSRLGIVDVEELRGRGEGGEG 444
P A S ET + LV +E G T F + +S + + P Y+ EE+ VE K+D ML RKIDLWPPEEIFEL+PLL+K + FEYA+ +RLE D RLDGTPLVPSL SK RRRLEHSRSFLASLKYSE+QRLARQWIEGLLEAATESTEAMDE+VFELL YE GVLV PVQEAL MLRRLRSMSPDEKTLTQ V+ETLQKRVEAEV+T+E PFVRLLALLLRL S +DRER+LRTELRNSRV+EEFAAYLEEGADYVARLRLGP SLP+DT +EM+KILAILR FT+TG +G + AA + + R +VDVEE+R EGGEG
Sbjct: 75 PRTAASDETGLGGRRFLVSTEMGTASGRETTPDFAQSKSSDSMGNEGNLTISEPLQYTTEEATLVETKIDGMLTRKIDLWPPEEIFELLPLLLKSSVFEYAIDKRLEQDLRLDGTPLVPSLGRPESKFRRRLEHSRSFLASLKYSEQQRLARQWIEGLLEAATESTEAMDERVFELLTYENGVLVEPVQEALEDMLRRLRSMSPDEKTLTQAVLETLQKRVEAEVRTRETPFVRLLALLLRLHSRDDRERVLRTELRNSRVIEEFAAYLEEGADYVARLRLGPCSLPEDTSDEMQKILAILRDFTQTGAGEGAQGWTRGAAPSVQPSFQPRPEDIGRRAVVDVEEVR---EGGEG 426
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO06G00610.1 ID=NO06G00610.1|Name=NO06G00610.1|organism=Nannochloropsis oceanica|type=mRNA|length=1368bp ATGAGGAGGAGATACGACTTGGGAGTCCGAATGCGGGCCTTTCTCCTCCT GCTGCATGTTCTAGGGGAAGCCTTCACAATATCCTCCTCCTTCATGCTGT GTCCCGCTCGTCCAATCAGACCCACACTAGTAGCTACTCCCGTCCATCGA CCAGAAGCATGCCCGACGACACCGCAACACCTCTTGAACTTCCTGGGATC AGTCAGACTGTCCTTATGCTTTCGATTGTCTGCGTCCTTTGACAATGATG CGGACGGTGGGAATAGTGAAAGTAATGAGGAAGACAGCCACCCGATAGTG GCACCGTCCCCGGAGACGTCCACCGCCCCAACCCAGAGGTTGGTAGGCTC CGAAGGGATGGCGACGATCTCTCCCTTTCGAAGCGGTAGCACTTACAACT CCGGTGCACCTGCCCTGGGAGTAGATCCGACCCGGCCACCGTCGTACTCC CCGGAAGAGTCCGCTTTCGTGGAGATGAAGGTGGACCGAATGCTTGTGCG GAAGATTGATCTATGGCCGCCCGAGGAGATATTCGAGCTGATGCCCTTGC TCATGAAGGGCACATACTTTGAATACGCCCTCGTCCAACGCCTAGAGTAC GATCAACGGCTGGACGGGACACCCCTTGTTCCCTCCCTCGCCTCATCCAG CAGCAAGGAACGACGTCGCCTCGAACACTCCCGCTCTTTCCTGGCCAGTT TGAAATACTCAGAGGAGCAGCGCCTGGCCCGACAATGGATTGAAGGGCTC CTAGAAGCAGCGACCGAAAGCACAGAGGCCATGGACGAGAAGGTGTTTGA GTTGCTGGCTTACGAGGGGGGTGTGCTGGTGGGGCCCGTGCAGGAGGCCC TGGCCACCATGCTCCGCCGCCTCCGCTCCATGTCCCCCGACGAAAAGACC TTGACTCAAGTCGTCATTGAGACGCTCCAAAAGCGCGTGGAGGCGGAGGT CCAAACCCAGGAAATGCCCTTTGTCCGCCTCCTTGCCCTCCTGCTTCGCC TGCCCTCACCTGAAGACCGGGAGCGGATCCTACGGACGGAGCTTCGCAAC AGCCGCGTGGTGGAGGAGTTTGCGGCTTACCTTGAGGAGGGGGCTGATTA CGTAGCACGGCTACGCCTAGGCCCGTACAGCCTCCCTGATGACACGCCGG AGGAGATGAAGAAGATTCTGGCTATTCTCAGGGGGTTCACTCGGACGGGG AGGAAGGGAGAAAGGGAGGGAGTGGTGAAGACGGCGGCGGGCCATGCGGC GATGGCCTCGTCCTCCGTGTCAAGATTAGGCATTGTGGACGTAGAGGAGT TGAGGGGAAGAGGGGAAGGAGGGGAGGGGGGCTTGCCGCCGCCGCCGCCG ACGACGACGACGAGATGA back to topprotein sequence of NO06G00610.1 >NO06G00610.1-protein ID=NO06G00610.1-protein|Name=NO06G00610.1|organism=Nannochloropsis oceanica|type=polypeptide|length=456bp MRRRYDLGVRMRAFLLLLHVLGEAFTISSSFMLCPARPIRPTLVATPVHR PEACPTTPQHLLNFLGSVRLSLCFRLSASFDNDADGGNSESNEEDSHPIV APSPETSTAPTQRLVGSEGMATISPFRSGSTYNSGAPALGVDPTRPPSYS PEESAFVEMKVDRMLVRKIDLWPPEEIFELMPLLMKGTYFEYALVQRLEY DQRLDGTPLVPSLASSSSKERRRLEHSRSFLASLKYSEEQRLARQWIEGL LEAATESTEAMDEKVFELLAYEGGVLVGPVQEALATMLRRLRSMSPDEKT LTQVVIETLQKRVEAEVQTQEMPFVRLLALLLRLPSPEDRERILRTELRN SRVVEEFAAYLEEGADYVARLRLGPYSLPDDTPEEMKKILAILRGFTRTG RKGEREGVVKTAAGHAAMASSSVSRLGIVDVEELRGRGEGGEGGLPPPPP TTTTR* back to topmRNA from alignment at chr6:230887..232397- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO06G00610.1 ID=NO06G00610.1|Name=NO06G00610.1|organism=Nannochloropsis oceanica|type=mRNA|length=1511bp|location=Sequence derived from alignment at chr6:230887..232397- (Nannochloropsis oceanica) ATGAGGAGGAGATACGACTTGGGAGTCCGAATGCGGGCCTTTCTCCTCCT
GCTGCATGTTCTAGGGGAAGCCTTCACAATATCCTCCTCCTTCATGCTGT
GTCCCGCTCGTCCAATCAGACCCACACTAGTAGCTACTCCCGTCCATCGA
CCAGAAGCATGCCCGACGACACCGCAACACCTCTTGAACTTCCTGGGATC
AGTCAGACTGTCCTTATGCTTTCGATTGTCTGCGTCCTTTGACAATGATG
CGGACGGTGGGAATAGTGAAAGTAATGAGGAAGACAGCCACCCGATAGTG
GCACCGTCCCCGGAGACGTCCACCGCCCCAACCCAGAGGTTGGTAGGCTC
CGAAGGGATGGCGACGATCTCTCCCTTTCGAAGCGGTAGCACTTACAACT
CCGGTGCACCTGCCCTGGGAGTAGATCCGACCCGGCCACCGTCGTACTCC
CCGGAAGAGTCCGCTTTCGTGGAGATGAAGGTGGACCGAATGCTTGTGCG
GAAGATTGATCTATGGCCGCCCGAGGAGATATTCGAGCTGATGCCCTTGC
TCATGAAGGTGAGCGAGAATATTGAAAAAATTAGGGATGGGGGAAAAGAG
GGAGAGAGATATGGAGAATTGTCCAGACGGCGAGATCAAGACCACTCACT
CACTCACCGACGCCTCTTTTTGCTGACACTCCTGCACACAATCACGCACA
GGGCACATACTTTGAATACGCCCTCGTCCAACGCCTAGAGTACGATCAAC
GGCTGGACGGGACACCCCTTGTTCCCTCCCTCGCCTCATCCAGCAGCAAG
GAACGACGTCGCCTCGAACACTCCCGCTCTTTCCTGGCCAGTTTGAAATA
CTCAGAGGAGCAGCGCCTGGCCCGACAATGGATTGAAGGGCTCCTAGAAG
CAGCGACCGAAAGCACAGAGGCCATGGACGAGAAGGTGTTTGAGTTGCTG
GCTTACGAGGGGGGTGTGCTGGTGGGGCCCGTGCAGGAGGCCCTGGCCAC
CATGCTCCGCCGCCTCCGCTCCATGTCCCCCGACGAAAAGACCTTGACTC
AAGTCGTCATTGAGACGCTCCAAAAGCGCGTGGAGGCGGAGGTCCAAACC
CAGGAAATGCCCTTTGTCCGCCTCCTTGCCCTCCTGCTTCGCCTGCCCTC
ACCTGAAGACCGGGAGCGGATCCTACGGACGGAGCTTCGCAACAGCCGCG
TGGTGGAGGAGTTTGCGGCTTACCTTGAGGAGGGGGCTGATTACGTAGCA
CGGCTACGCCTAGGCCCGTACAGCCTCCCTGATGACACGCCGGAGGAGAT
GAAGAAGATTCTGGCTATTCTCAGGGGGTTCACTCGGACGGGGAGGAAGG
GAGAAAGGGAGGGAGTGGTGAAGACGGCGGCGGGCCATGCGGCGATGGCC
TCGTCCTCCGTGTCAAGATTAGGCATTGTGGACGTAGAGGAGTTGAGGGG
AAGAGGGGAAGGAGGGGAGGGGGGCTTGCCGCCGCCGCCGCCGACGACGA
CGACGAGATGA back to topCoding sequence (CDS) from alignment at chr6:230887..232397- >NO06G00610.1 ID=NO06G00610.1|Name=NO06G00610.1|organism=Nannochloropsis oceanica|type=CDS|length=1368bp|location=Sequence derived from alignment at chr6:230887..232397- (Nannochloropsis oceanica) ATGAGGAGGAGATACGACTTGGGAGTCCGAATGCGGGCCTTTCTCCTCCT GCTGCATGTTCTAGGGGAAGCCTTCACAATATCCTCCTCCTTCATGCTGT GTCCCGCTCGTCCAATCAGACCCACACTAGTAGCTACTCCCGTCCATCGA CCAGAAGCATGCCCGACGACACCGCAACACCTCTTGAACTTCCTGGGATC AGTCAGACTGTCCTTATGCTTTCGATTGTCTGCGTCCTTTGACAATGATG CGGACGGTGGGAATAGTGAAAGTAATGAGGAAGACAGCCACCCGATAGTG GCACCGTCCCCGGAGACGTCCACCGCCCCAACCCAGAGGTTGGTAGGCTC CGAAGGGATGGCGACGATCTCTCCCTTTCGAAGCGGTAGCACTTACAACT CCGGTGCACCTGCCCTGGGAGTAGATCCGACCCGGCCACCGTCGTACTCC CCGGAAGAGTCCGCTTTCGTGGAGATGAAGGTGGACCGAATGCTTGTGCG GAAGATTGATCTATGGCCGCCCGAGGAGATATTCGAGCTGATGCCCTTGC TCATGAAGGGCACATACTTTGAATACGCCCTCGTCCAACGCCTAGAGTAC GATCAACGGCTGGACGGGACACCCCTTGTTCCCTCCCTCGCCTCATCCAG CAGCAAGGAACGACGTCGCCTCGAACACTCCCGCTCTTTCCTGGCCAGTT TGAAATACTCAGAGGAGCAGCGCCTGGCCCGACAATGGATTGAAGGGCTC CTAGAAGCAGCGACCGAAAGCACAGAGGCCATGGACGAGAAGGTGTTTGA GTTGCTGGCTTACGAGGGGGGTGTGCTGGTGGGGCCCGTGCAGGAGGCCC TGGCCACCATGCTCCGCCGCCTCCGCTCCATGTCCCCCGACGAAAAGACC TTGACTCAAGTCGTCATTGAGACGCTCCAAAAGCGCGTGGAGGCGGAGGT CCAAACCCAGGAAATGCCCTTTGTCCGCCTCCTTGCCCTCCTGCTTCGCC TGCCCTCACCTGAAGACCGGGAGCGGATCCTACGGACGGAGCTTCGCAAC AGCCGCGTGGTGGAGGAGTTTGCGGCTTACCTTGAGGAGGGGGCTGATTA CGTAGCACGGCTACGCCTAGGCCCGTACAGCCTCCCTGATGACACGCCGG AGGAGATGAAGAAGATTCTGGCTATTCTCAGGGGGTTCACTCGGACGGGG AGGAAGGGAGAAAGGGAGGGAGTGGTGAAGACGGCGGCGGGCCATGCGGC GATGGCCTCGTCCTCCGTGTCAAGATTAGGCATTGTGGACGTAGAGGAGT TGAGGGGAAGAGGGGAAGGAGGGGAGGGGGGCTTGCCGCCGCCGCCGCCG ACGACGACGACGAGATGA back to top
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