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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr6 | genome | chr6:213956..217133 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO06G00530.2 vs.
Match: EWM26152.1 (phosphoprotein phosphatase a [Nannochloropsis gaditana]) HSP 1 Score: 920.6 bits (2378), Expect = 2.500e-264 Identity = 478/598 (79.93%), Postives = 531/598 (88.80%), Query Frame = 0
Query: 1 MGGGSDDSTVG--GEDLFQIATMIEHLRHDDLGYRVHATKNLGRIARALGDERTREELIPFIVDSTDDEDQVLLAMAEAVGGLVDWVGGMEYVYQLLVPLEALTACEEGVVRERAIESIHRVVGAMSKEDVVDHFVPFLRRLTGRDWFTTRMSATALFEPVYSDLPPEAQAELIEMYCQLCKDDTPMVRRVAALHLAPFVRIIPPFSSSTPSSPRSSPSSPSSCPHPLLPAFRSLAADDHDNVRLQTIGNCVAFAEVLPTEEARVEHALPLTLAAAADRAWRVRWSVASKFEHVCQAFGPSVTASSLCPSFERLLQDPEAEVRTAAAANAPTVARHLPPAIIVSAVMPCVKQLIVDSSEHVRAALATGINDLAPLLGKEDTITHLLPLLLQLLRDASSDVRLNIIAKLQALNEVIGVELLSQSLLPAIVDLAEDSKWRVRLAIIEHIPALAQQLGPTFFNEKLSGLCMMWLSDGIHSIRLAATQNLKRLTDLFGVEWAQQHILPRIEAMHAHSSHLQRMTALYAIQVLSESLSEDVLVTEALPLALHLTKDPVANIRFTLAKTLEMLAPKVMEQEGALLPTQVRPCLEELTSDTDRDV 597
+GGG + G GED FQIA +IE LRH+DL YRV+ATK+L I+RALG+ERTREELIPFI+DSTDDED+VLLAMAEA+G LVD +GG E+V+QLLVPLEALTACEEGVVRERA+ESI +V AMS+E DH +PFLRRL RDWFTTRMSATALFE VYSDLP + Q ELIE+Y +LCKDDTPMVRRVAALHLA FVR IP P SP +SP+SP +C HPLLP+FRSLAADDHDNVRLQT+ NCVA A+ LP E AR++ LP+TLAAAADRAWRVRWSVASKFE VCQAFGP VTASS+C SFERLLQDPEAEVRTAAAAN P VA+HLPPA++VSA++PC+KQL+VD SEHVRAALATGIND APLLGKEDTI HLLPLLLQLLRDASS+VRLNIIAKLQ+LN+VIGVELLSQSLLPAIVDLAED+KWRVRLAIIEHIPALAQQLGP FFNEKL+GLCMMWLSDGIHSIRLAATQNLKRLTDLFG EWAQ HILPR+ +M +H SHLQRMTALYAIQVLSESLSEDVLV+EALPLALHL KDPV NIRFTLAKTLE LAPKV+E+EGA+LP+QVRPCLEEL +D+DRDV
Sbjct: 46 VGGGEEGGGKGRGGEDFFQIAALIEQLRHNDLDYRVNATKHLCTISRALGEERTREELIPFIMDSTDDEDEVLLAMAEALGDLVDCLGGPEHVHQLLVPLEALTACEEGVVRERAVESILKVGTAMSREAKGDHLLPFLRRLADRDWFTTRMSATALFEHVYSDLPADTQQELIELYERLCKDDTPMVRRVAALHLASFVRSIP----CPPPSPAASPASPPACSHPLLPSFRSLAADDHDNVRLQTVANCVALAQALPAE-ARLQEVLPITLAAAADRAWRVRWSVASKFEDVCQAFGPEVTASSICSSFERLLQDPEAEVRTAAAANTPAVAQHLPPALVVSALVPCLKQLVVDGSEHVRAALATGINDFAPLLGKEDTIAHLLPLLLQLLRDASSEVRLNIIAKLQSLNDVIGVELLSQSLLPAIVDLAEDNKWRVRLAIIEHIPALAQQLGPAFFNEKLNGLCMMWLSDGIHSIRLAATQNLKRLTDLFGQEWAQAHILPRVRSMQSHPSHLQRMTALYAIQVLSESLSEDVLVSEALPLALHLNKDPVPNIRFTLAKTLETLAPKVVEREGAVLPSQVRPCLEELLNDSDRDV 638
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO06G00530.2 ID=NO06G00530.2|Name=NO06G00530.2|organism=Nannochloropsis oceanica|type=mRNA|length=2789bp AATAGGACAAGACTCAGGGCGCTACCTGGGGGGTCGTCCAAGTCTGTGCT GCCGAGACAAACAAAGGTGCCCTTTTCGTCTCGAAGCCTCCAACCATCAG TAGCAGAAGACTTCCCGACAGCAGCACCTCGTGAGGCAACGACCCACCGA CCAACACCCACGGCACTAGCAGTGCGGCCTTGCCCTCGCCTTTGTCCTAT CCTAATTGTGGATTCACACTCCTAGTTGTGACATCGCCTTCACTTTGGAA TGATGGACGTATCCCCCATGAGTAAGCGGAGTCAAACGAGCCTCCCACCC CCCTTCCCTCCCTCTTTTCCTACTTTAATCTTACCACGCGCTCTGGGACG ATGACAAAAGCATCTCACGTTTTAAACTTGCCTGAATCCAACTACGAATC TAGCGGGCGGATTGCGTCAAATTATCCTGTGCTTCTGACCCGGTTTAATG TCCTCTTGCGCTCCCCCCTTTTTCCCTCGTACACACTTTCCTTCCGTTTC TCCTCACCAAAGCACACGCCCTCTCACCATATTCCATTCTCCTCCATCCC GTTTCACCAGGTGTCTCGCCTCCCGGCGGCCAAGCACCCGAGCCCTTCCT ACAACAGCACCACTACCCTTTAGAAGGCATTTCACCAACTAACGGTGAAG GAGTGGGGATGGGGGGAGGAAGCGATGACTCAACCGTGGGAGGAGAGGAT CTCTTTCAGATCGCGACAATGATTGAGCATTTGCGTCATGATGACCTGGG GTATCGGGTGCATGCGACGAAGAACTTGGGAAGGATAGCCCGGGCATTAG GCGATGAGAGGACACGGGAGGAATTAATCCCCTTCATAGTGGATAGCACT GATGATGAGGACCAGGTGTTGCTGGCCATGGCGGAGGCGGTGGGGGGACT GGTGGATTGGGTTGGAGGAATGGAGTACGTGTATCAGCTGTTGGTGCCTT TGGAGGCATTGACGGCGTGCGAGGAGGGGGTGGTGAGGGAGAGGGCGATC GAGAGCATCCACAGAGTGGTTGGGGCGATGAGCAAGGAGGACGTCGTGGA CCACTTCGTCCCCTTCCTGAGGAGGCTGACGGGCAGGGATTGGTTCACAA CCCGGATGTCGGCGACGGCCTTGTTTGAGCCGGTGTACAGTGACCTTCCC CCCGAGGCCCAAGCCGAGCTCATCGAGATGTACTGCCAACTCTGCAAAGA CGACACCCCTATGGTACGGCGCGTTGCCGCCCTCCACCTCGCCCCCTTCG TCCGCATCATTCCTCCCTTTTCTTCCTCCACCCCTTCCTCTCCTCGTTCT TCGCCCTCCTCCCCTTCCTCCTGCCCCCACCCCCTCCTCCCCGCTTTCCG CTCCCTCGCTGCCGACGACCACGACAATGTCCGGCTGCAAACTATCGGAA ATTGCGTCGCCTTTGCCGAGGTCCTCCCCACCGAAGAAGCCCGCGTCGAA CATGCTCTCCCCCTCACCCTCGCCGCCGCTGCTGACCGTGCCTGGCGGGT CCGTTGGAGCGTGGCCTCCAAGTTTGAGCACGTCTGTCAGGCCTTCGGGC CCTCCGTCACTGCCTCCTCCCTCTGCCCCTCCTTCGAGCGCCTCCTTCAA GACCCCGAGGCGGAAGTCCGGACTGCAGCGGCCGCGAACGCTCCTACGGT GGCGCGGCACCTCCCTCCTGCCATCATCGTAAGTGCAGTGATGCCTTGTG TCAAGCAATTAATTGTCGACAGCAGCGAGCACGTACGCGCGGCCCTGGCC ACCGGAATCAACGACCTGGCTCCTCTCTTGGGGAAAGAGGACACCATCAC GCACCTCCTCCCCCTCCTCCTCCAGCTTCTCCGCGACGCCTCCTCGGACG TCCGTCTCAACATCATCGCCAAGCTGCAGGCCTTGAACGAGGTCATAGGG GTGGAGCTCCTCTCTCAGTCCCTTCTCCCCGCCATCGTGGACCTGGCCGA GGACAGCAAGTGGAGGGTGCGGCTGGCCATCATCGAGCACATCCCCGCCC TAGCTCAGCAGCTGGGCCCAACTTTCTTCAACGAGAAGCTAAGTGGGCTA TGCATGATGTGGCTGAGCGATGGCATCCACTCGATCAGACTGGCAGCGAC GCAGAATCTGAAGAGACTAACCGACTTGTTTGGGGTCGAATGGGCGCAGC AGCACATCTTGCCCAGGATCGAAGCCATGCATGCGCATTCATCTCATTTG CAGCGCATGACAGCGCTGTATGCAATTCAGGTCCTCTCCGAATCCCTCAG CGAGGACGTCCTTGTCACAGAAGCTCTCCCCCTCGCCCTTCACCTCACCA AGGACCCCGTGGCCAACATTCGTTTTACGCTTGCCAAGACACTCGAGATG CTGGCACCTAAGGTGATGGAACAGGAAGGAGCGTTATTGCCCACACAAGT CCGCCCTTGCTTGGAGGAGCTGACGAGTGACACAGACAGGGATGTACGAT TTTATGCCAAGAAGGCCTTGAGGGTGTGTGATGAGCTGGTAAGACATTAG GGAAGCTGGAGGGCAGAGAGTAGAAAAGGGGACAAGTGAGGCAAGGGAGG GCTCGAAGGATTTGTGAGAGGAAAGGAAGGTAAAGGAGAATGGGGAGAAA GCTGAGTGTCAGGGAATGGAGGTGATGAATGCACATGGGGGAGGTGGACG GGTGAGTGGGGCTGATGTGATGGCCCAAAGAGTCGCTTTCGTGAGTGGCA AAAGATGGCACCTGGAGAGAGATGGCCTTCCTTCTCCCGATGAAAGAAGC GATCCAATACAAAGACAATTATTAGACTACGTCAAGAGG back to topprotein sequence of NO06G00530.2 >NO06G00530.2-protein ID=NO06G00530.2-protein|Name=NO06G00530.2|organism=Nannochloropsis oceanica|type=polypeptide|length=614bp MGGGSDDSTVGGEDLFQIATMIEHLRHDDLGYRVHATKNLGRIARALGDE RTREELIPFIVDSTDDEDQVLLAMAEAVGGLVDWVGGMEYVYQLLVPLEA LTACEEGVVRERAIESIHRVVGAMSKEDVVDHFVPFLRRLTGRDWFTTRM SATALFEPVYSDLPPEAQAELIEMYCQLCKDDTPMVRRVAALHLAPFVRI IPPFSSSTPSSPRSSPSSPSSCPHPLLPAFRSLAADDHDNVRLQTIGNCV AFAEVLPTEEARVEHALPLTLAAAADRAWRVRWSVASKFEHVCQAFGPSV TASSLCPSFERLLQDPEAEVRTAAAANAPTVARHLPPAIIVSAVMPCVKQ LIVDSSEHVRAALATGINDLAPLLGKEDTITHLLPLLLQLLRDASSDVRL NIIAKLQALNEVIGVELLSQSLLPAIVDLAEDSKWRVRLAIIEHIPALAQ QLGPTFFNEKLSGLCMMWLSDGIHSIRLAATQNLKRLTDLFGVEWAQQHI LPRIEAMHAHSSHLQRMTALYAIQVLSESLSEDVLVTEALPLALHLTKDP VANIRFTLAKTLEMLAPKVMEQEGALLPTQVRPCLEELTSDTDRDVRFYA KKALRVCDELVRH* back to topmRNA from alignment at chr6:213956..217133+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO06G00530.2 ID=NO06G00530.2|Name=NO06G00530.2|organism=Nannochloropsis oceanica|type=mRNA|length=3178bp|location=Sequence derived from alignment at chr6:213956..217133+ (Nannochloropsis oceanica) AATAGGACAAGACTCAGGGCGCTACCTGGGGGGTCGTCCAAGTCTGTGCT
GCCGAGACAAACAAAGGTGCCCTTTTCGTCTCGAAGCCTCCAACCATCAG
TAGCAGAAGACTTCCCGACAGCAGCACCTCGTGAGGCAACGACCCACCGA
CCAACACCCACGGCACTAGCAGTGCGGCCTTGCCCTCGCCTTTGTCCTAT
CCTAATTGTGGATTCACACTCCTAGTTGTGACATCGCCTTCACTTTGGAA
TGATGGACGTATCCCCCATGAGTAAGCGGAGTCAAACGAGCCTCCCACCC
CCCTTCCCTCCCTCTTTTCCTACTTTAATCTTACCACGCGCTCTGGGACG
ATGACAAAAGCATCTCACGTTTTAAACTTGCCTGAATCCAACTACGAATC
TAGCGGGCGGATTGCGTCAAATTATCCTGTGCTTCTGACCCGGTTTAATG
TCCTCTTGCGCTCCCCCCTTTTTCCCTCGTACACACTTTCCTTCCGTTTC
TCCTCACCAAAGCACACGCCCTCTCACCATATTCCATTCTCCTCCATCCC
GTTTCACCAGGTGTCTCGCCTCCCGGCGGCCAAGCACCCGAGCCCTTCCT
ACAACAGCACCACTACCCTTTAGAAGGCATTTCACCAACTAACGGTGAAG
GAGTGGGGATGGGGGGAGGAAGCGATGACTCAACCGTGGGAGGAGAGGAT
CTCTTTCAGATCGCGACAATGATTGAGCATTTGCGTCATGATGACCTGGG
GTATCGGGTGCATGCGACGAAGAACTTGGGAAGGATAGCCCGGGCATTAG
GCGATGAGAGGACACGGGAGGAATTAATCCCCTTCATAGTGGATAGCACT
GATGATGAGGACCAGGTGTTGCTGGCCATGGCGGAGGCGGTGGGGGGACT
GGTGGATTGGGTTGGAGGAATGGAGTACGTGTATCAGCTGTTGGTGCCTT
TGGAGGCATTGACGGCGTGCGAGGAGGGGGTGGTGAGGGAGAGGGCGATC
GAGAGCATCCACAGAGTGGTTGGGGCGATGAGCAAGGAGGACGTCGTGGA
CCACTTCGTCCCCTTCCTGAGGAGGCTGACGGGCAGGGATTGGTTCACAA
CCCGGATGTCGGCGACGGCCTTGTTTGAGCCGGTGTACAGGTAAGAGGAG
GGGGGAAGAAGAGGAGGGAGAACGAGGACACCATGACTCTCCCAAATGGT
GCGTGGAACACGCCTGCCTCCCTCCCTCAGCGGCCTGATAGAGATATCCC
ACCAGCTCTCTCTAGAAACTCCACCCACTCACCTTCCCGCTCTTCCTTCC
TCCTTCCCTCCCTCCATCAGTGACCTTCCCCCCGAGGCCCAAGCCGAGCT
CATCGAGATGTACTGCCAACTCTGCAAAGACGACACCCCTATGGTACGGC
GCGTTGCCGCCCTCCACCTCGCCCCCTTCGTCCGCATCATTCCTCCCTTT
TCTTCCTCCACCCCTTCCTCTCCTCGTTCTTCGCCCTCCTCCCCTTCCTC
CTGCCCCCACCCCCTCCTCCCCGCTTTCCGCTCCCTCGCTGCCGACGACC
ACGACAATGTCCGGCTGCAAACTATCGGAAATTGCGTCGCCTTTGCCGAG
GTCCTCCCCACCGAAGAAGCCCGCGTCGAACATGCTCTCCCCCTCACCCT
CGCCGCCGCTGCTGACCGTGCCTGGCGGGTCCGTTGGAGCGTGGCCTCCA
AGTTTGAGCACGTCTGTCAGGCCTTCGGGCCCTCCGTCACTGCCTCCTCC
CTCTGCCCCTCCTTCGAGCGCCTCCTTCAAGACCCCGAGGCGGAAGTCCG
GACTGCAGCGGCCGCGAACGCTCCTACGGTGGCGCGGCACCTCCCTCCTG
CCATCATCGTAAGTGCAGTGATGCCTTGTGTCAAGCAATTAATTGTCGAC
AGCAGCGAGCACGTACGCGCGGCCCTGGCCACCGGAATCAACGACCTGGC
TCCTCTCTTGGGGAAAGAGGACACCATCACGCACCTCCTCCCCCTCCTCC
TCCAGCTTCTCCGCGACGCCTCCTCGGACGTCCGTCTCAACATCATCGCC
AAGCTGCAGGCCTTGAACGAGGTCATAGGGGTGGAGCTCCTCTCTCAGTC
CCTTCTCCCCGCCATCGTGGACCTGGCCGAGGACAGCAAGTGGAGGGTGC
GGCTGGCCATCATCGAGCACATCCCCGCCCTAGCTCAGCAGCTGGGCCCA
ACTTTCTTCAACGAGAAGCTAAGTGGGCTATGCATGATGTGGCTGAGCGA
TGGCATCCACTCGATCAGACTGGCAGCGACGCAGAATCTGAAGAGACTAA
CCGACTTGTTTGGGGTCGAATGGGCGCAGCAGCACATCTTGCCCAGGATC
GAAGCCATGCATGCGCATTCATCTCATTTGCAGCGCATGACAGCGCTGTA
TGCAATTCAGGTACGCAAGCCTTCACTCTTTCTCTCACTTTCATCTTCAT
TCAGGCCAGCACTTACTTGGACACGACATGCTTTCCCAAAGAAGCCTCTC
GGATCTCTCTAATCATTTTCTCCTCCTTCCATTTCGAGCGATACAACTTT
ATCGCCCGGTCGTGCTAGTACTCCTCTTCTTTCCACACTGACTCTCTCCC
ACCTTCCCCTCCCAACTAGGTCCTCTCCGAATCCCTCAGCGAGGACGTCC
TTGTCACAGAAGCTCTCCCCCTCGCCCTTCACCTCACCAAGGACCCCGTG
GCCAACATTCGTTTTACGCTTGCCAAGACACTCGAGATGCTGGCACCTAA
GGTGATGGAACAGGAAGGAGCGTTATTGCCCACACAAGTCCGCCCTTGCT
TGGAGGAGCTGACGAGTGACACAGACAGGGATGTACGATTTTATGCCAAG
AAGGCCTTGAGGGTGTGTGATGAGCTGGTAAGACATTAGGGAAGCTGGAG
GGCAGAGAGTAGAAAAGGGGACAAGTGAGGCAAGGGAGGGCTCGAAGGAT
TTGTGAGAGGAAAGGAAGGTAAAGGAGAATGGGGAGAAAGCTGAGTGTCA
GGGAATGGAGGTGATGAATGCACATGGGGGAGGTGGACGGGTGAGTGGGG
CTGATGTGATGGCCCAAAGAGTCGCTTTCGTGAGTGGCAAAAGATGGCAC
CTGGAGAGAGATGGCCTTCCTTCTCCCGATGAAAGAAGCGATCCAATACA
AAGACAATTATTAGACTACGTCAAGAGG back to topCoding sequence (CDS) from alignment at chr6:213956..217133+ >NO06G00530.2 ID=NO06G00530.2|Name=NO06G00530.2|organism=Nannochloropsis oceanica|type=CDS|length=1842bp|location=Sequence derived from alignment at chr6:213956..217133+ (Nannochloropsis oceanica) ATGGGGGGAGGAAGCGATGACTCAACCGTGGGAGGAGAGGATCTCTTTCA GATCGCGACAATGATTGAGCATTTGCGTCATGATGACCTGGGGTATCGGG TGCATGCGACGAAGAACTTGGGAAGGATAGCCCGGGCATTAGGCGATGAG AGGACACGGGAGGAATTAATCCCCTTCATAGTGGATAGCACTGATGATGA GGACCAGGTGTTGCTGGCCATGGCGGAGGCGGTGGGGGGACTGGTGGATT GGGTTGGAGGAATGGAGTACGTGTATCAGCTGTTGGTGCCTTTGGAGGCA TTGACGGCGTGCGAGGAGGGGGTGGTGAGGGAGAGGGCGATCGAGAGCAT CCACAGAGTGGTTGGGGCGATGAGCAAGGAGGACGTCGTGGACCACTTCG TCCCCTTCCTGAGGAGGCTGACGGGCAGGGATTGGTTCACAACCCGGATG TCGGCGACGGCCTTGTTTGAGCCGGTGTACAGTGACCTTCCCCCCGAGGC CCAAGCCGAGCTCATCGAGATGTACTGCCAACTCTGCAAAGACGACACCC CTATGGTACGGCGCGTTGCCGCCCTCCACCTCGCCCCCTTCGTCCGCATC ATTCCTCCCTTTTCTTCCTCCACCCCTTCCTCTCCTCGTTCTTCGCCCTC CTCCCCTTCCTCCTGCCCCCACCCCCTCCTCCCCGCTTTCCGCTCCCTCG CTGCCGACGACCACGACAATGTCCGGCTGCAAACTATCGGAAATTGCGTC GCCTTTGCCGAGGTCCTCCCCACCGAAGAAGCCCGCGTCGAACATGCTCT CCCCCTCACCCTCGCCGCCGCTGCTGACCGTGCCTGGCGGGTCCGTTGGA GCGTGGCCTCCAAGTTTGAGCACGTCTGTCAGGCCTTCGGGCCCTCCGTC ACTGCCTCCTCCCTCTGCCCCTCCTTCGAGCGCCTCCTTCAAGACCCCGA GGCGGAAGTCCGGACTGCAGCGGCCGCGAACGCTCCTACGGTGGCGCGGC ACCTCCCTCCTGCCATCATCGTAAGTGCAGTGATGCCTTGTGTCAAGCAA TTAATTGTCGACAGCAGCGAGCACGTACGCGCGGCCCTGGCCACCGGAAT CAACGACCTGGCTCCTCTCTTGGGGAAAGAGGACACCATCACGCACCTCC TCCCCCTCCTCCTCCAGCTTCTCCGCGACGCCTCCTCGGACGTCCGTCTC AACATCATCGCCAAGCTGCAGGCCTTGAACGAGGTCATAGGGGTGGAGCT CCTCTCTCAGTCCCTTCTCCCCGCCATCGTGGACCTGGCCGAGGACAGCA AGTGGAGGGTGCGGCTGGCCATCATCGAGCACATCCCCGCCCTAGCTCAG CAGCTGGGCCCAACTTTCTTCAACGAGAAGCTAAGTGGGCTATGCATGAT GTGGCTGAGCGATGGCATCCACTCGATCAGACTGGCAGCGACGCAGAATC TGAAGAGACTAACCGACTTGTTTGGGGTCGAATGGGCGCAGCAGCACATC TTGCCCAGGATCGAAGCCATGCATGCGCATTCATCTCATTTGCAGCGCAT GACAGCGCTGTATGCAATTCAGGTCCTCTCCGAATCCCTCAGCGAGGACG TCCTTGTCACAGAAGCTCTCCCCCTCGCCCTTCACCTCACCAAGGACCCC GTGGCCAACATTCGTTTTACGCTTGCCAAGACACTCGAGATGCTGGCACC TAAGGTGATGGAACAGGAAGGAGCGTTATTGCCCACACAAGTCCGCCCTT GCTTGGAGGAGCTGACGAGTGACACAGACAGGGATGTACGATTTTATGCC AAGAAGGCCTTGAGGGTGTGTGATGAGCTGGTAAGACATTAG back to top
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