NO06G00520.1, NO06G00520.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G00520.1
Unique NameNO06G00520.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1581
Alignment locationchr6:211838..213638 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:211838..213638 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO06G00520.1 vs.
Match: EWM26139.1 (protoheme ix farnesyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 584.7 bits (1506), Expect = 2.600e-163
Identity = 312/440 (70.91%), Postives = 349/440 (79.32%), Query Frame = 0 
Query:   57 IAPLTSGSSHLDAAA------SEGKVTPPSPSPIKEASGLRNVVGLCAELGKARLSALVVLTTSAGFLAAGGPVAWVPLTAVSVGTMLAACSANTFNQLIETGNDRLMKRTFLRPLPSGRASRPFAMAWGLGSAGASAAILAAGTTPLTIALGMGNLALYALPYTLSKTRSEINTWIGAVVGAVPPLMGWAAATECTSLATLLSTPDAMLLAGALFLWQFPHFFALSWVHRKDYARGGFKMVPCADPGGGRTAELIWRYSLYLAPLPLLATGMGVTGSMFALEGSFLNAYLVYLAGRFRKERTDERARAVFRCSLWYLPVLLGGFVFHSKQWDVEKVKE--GEEEMEGGMTMEALVAGARKQLTKVCVHEVLVQEGK--------NMHAGVLCPPVVAINVVEETKEVVGKVREEAEKVGGVQVHLTLSAPKSTGGGGRE 481
            + PL+S  S   A A        G V P     I + S +R + GLCAELGKARLSALVVLTTS+GFLAAGGPVAW+P TAVSVGTMLAACSANTFNQL+ET ND+ MKRT LRPLPSGRASRPFA+AW +GSAGASAA+L AGT PLT ALGMGNLALYALPYTLSKTRSE NTWIGA+VGAVPPLMGWAAAT+C SL +LLS+PDA+LLA  LFLWQFPHFFALSWVHRKDYARGGF+MVPCAD GG RTA+LIWRYSL LAPLP+LATG+GVTGSMFALEGS LN YL+YLA RF+ ERTDERARAVFRCSLWYLPVLLGGFVFHS+QWD E+V E  G       +++E  V+GARKQL KVCVHE+++QEGK            G+LCPPVVA +VVEETKEVV KV+ EAE      + + LS     GG  RE
Sbjct:    4 LLPLSSSYSSSKAVALVAGHQGRGPVVPR----IAKVSSIRQIAGLCAELGKARLSALVVLTTSSGFLAAGGPVAWLPFTAVSVGTMLAACSANTFNQLLETDNDKRMKRTHLRPLPSGRASRPFALAWAVGSAGASAAVLTAGTNPLTTALGMGNLALYALPYTLSKTRSEANTWIGALVGAVPPLMGWAAATDCASLTSLLSSPDAVLLASILFLWQFPHFFALSWVHRKDYARGGFQMVPCADSGGRRTADLIWRYSLCLAPLPVLATGLGVTGSMFALEGSALNLYLMYLARRFKSERTDERARAVFRCSLWYLPVLLGGFVFHSRQWDSERVTETVGNSGERNNLSVERWVSGARKQLAKVCVHEMMLQEGKVEQGGGRERREGGLLCPPVVAGHVVEETKEVVEKVKGEAE---ASAMRMPLSLRMGDGGVRRE 436
The following BLAST results are available for this feature:
BLAST of NO06G00520.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26139.12.600e-16370.91protoheme ix farnesyltransferase [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G00520NO06G00520Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G00520.1NO06G00520.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G00520.1.cds1NO06G00520.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G00520.1.cds2NO06G00520.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G00520.1 ID=NO06G00520.1|Name=NO06G00520.1|organism=Nannochloropsis oceanica|type=mRNA|length=1581bp
ACCACAGGGAGGCGGTAGAGTGTGATGTGGAGACAACTCTCCCCCTCGTC
CGCCTCCTGCTGCAGGCTATTGTTAGCAGCATCGACGGCAGCAAGAAGAC
CACAACACCTTGCGTCGGCAACAAGCATCCGCCGCACCTCCTCTCCCTCC
TCCTCCTCATCATCATCATCTTTCACTCCTACACCCAAATCCATCGCGCC
CCTGACAAGTGGCAGCAGTCACCTCGACGCAGCTGCTTCGGAGGGGAAAG
TAACCCCGCCATCACCGTCGCCCATCAAGGAGGCGTCGGGCTTGAGAAAT
GTAGTGGGGCTGTGCGCGGAGCTGGGCAAGGCCCGACTCAGCGCCCTCGT
CGTTCTCACCACATCGGCCGGCTTTCTAGCCGCTGGTGGACCTGTCGCCT
GGGTCCCCCTGACAGCAGTGTCGGTGGGCACCATGCTTGCTGCATGCTCG
GCCAACACCTTCAACCAACTCATCGAAACAGGAAATGACCGGCTCATGAA
ACGCACCTTCCTCCGCCCTCTCCCCTCTGGGCGTGCCTCGCGTCCTTTCG
CCATGGCTTGGGGGCTAGGGAGTGCTGGGGCCTCTGCTGCAATTCTAGCA
GCAGGTACTACCCCTCTTACGATCGCCCTGGGGATGGGTAATTTGGCACT
GTACGCCTTGCCATACACGTTGAGCAAGACGAGGAGTGAGATCAACACAT
GGATAGGGGCGGTGGTGGGGGCAGTCCCCCCCCTGATGGGTTGGGCGGCT
GCGACGGAATGTACGAGCCTCGCGACCCTCTTGTCAACTCCCGACGCCAT
GTTGCTCGCGGGAGCCTTGTTTTTGTGGCAGTTTCCGCATTTCTTTGCCC
TGTCCTGGGTGCATCGAAAGGACTATGCAAGAGGGGGGTTTAAGATGGTG
CCTTGTGCGGACCCCGGGGGGGGGAGGACGGCCGAGTTGATCTGGCGCTA
TAGCCTATACTTGGCGCCCTTGCCCCTCCTCGCCACAGGCATGGGGGTGA
CGGGGAGCATGTTCGCCTTGGAAGGGTCATTCTTGAATGCATACCTCGTA
TATTTGGCGGGGAGGTTCAGGAAGGAGCGGACGGATGAACGGGCACGGGC
AGTATTCCGGTGTTCGTTGTGGTACTTGCCTGTGCTGCTTGGAGGCTTTG
TATTTCACAGCAAGCAGTGGGACGTGGAGAAGGTGAAGGAGGGAGAGGAG
GAGATGGAGGGCGGCATGACTATGGAGGCTTTGGTGGCGGGGGCGAGGAA
GCAGCTGACGAAGGTGTGTGTGCATGAGGTGCTGGTACAGGAGGGGAAGA
ATATGCATGCGGGCGTGTTGTGTCCACCGGTGGTGGCGATCAACGTGGTG
GAAGAGACGAAAGAGGTCGTGGGGAAGGTGAGGGAAGAGGCAGAGAAGGT
GGGAGGAGTGCAGGTGCATTTGACGCTATCGGCACCAAAGTCGACAGGAG
GAGGAGGGAGGGAGTGAGGGGGTGAGGGGCGAGGTTTTGGTGAATGTTTA
TATAATGAAGAGGGCAGGGCATAGACAGACGACGAGAGGCGAACAAGCGC
AAGAAAGAAAGAAGCAAAGAAAACAGCCAGA
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protein sequence of NO06G00520.1

>NO06G00520.1-protein ID=NO06G00520.1-protein|Name=NO06G00520.1|organism=Nannochloropsis oceanica|type=polypeptide|length=481bp
MWRQLSPSSASCCRLLLAASTAARRPQHLASATSIRRTSSPSSSSSSSSF
TPTPKSIAPLTSGSSHLDAAASEGKVTPPSPSPIKEASGLRNVVGLCAEL
GKARLSALVVLTTSAGFLAAGGPVAWVPLTAVSVGTMLAACSANTFNQLI
ETGNDRLMKRTFLRPLPSGRASRPFAMAWGLGSAGASAAILAAGTTPLTI
ALGMGNLALYALPYTLSKTRSEINTWIGAVVGAVPPLMGWAAATECTSLA
TLLSTPDAMLLAGALFLWQFPHFFALSWVHRKDYARGGFKMVPCADPGGG
RTAELIWRYSLYLAPLPLLATGMGVTGSMFALEGSFLNAYLVYLAGRFRK
ERTDERARAVFRCSLWYLPVLLGGFVFHSKQWDVEKVKEGEEEMEGGMTM
EALVAGARKQLTKVCVHEVLVQEGKNMHAGVLCPPVVAINVVEETKEVVG
KVREEAEKVGGVQVHLTLSAPKSTGGGGRE*
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mRNA from alignment at chr6:211838..213638+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G00520.1 ID=NO06G00520.1|Name=NO06G00520.1|organism=Nannochloropsis oceanica|type=mRNA|length=1801bp|location=Sequence derived from alignment at chr6:211838..213638+ (Nannochloropsis oceanica)
ACCACAGGGAGGCGGTAGAGTGTGATGTGGAGACAACTCTCCCCCTCGTC
CGCCTCCTGCTGCAGGCTATTGTTAGCAGCATCGACGGCAGCAAGAAGAC
CACAACACCTTGCGTCGGCAACAAGCATCCGCCGCACCTCCTCTCCCTCC
TCCTCCTCATCATCATCATCTTTCACTCCTACACCCAAATCCATCGCGCC
CCTGACAAGTGGCAGCAGTCACCTCGACGCAGCTGCTTCGGAGGGGAAAG
TAACCCCGCCATCACCGTCGCCCATCAAGGAGGCGTCGGGCTTGAGAAAT
GTAGTGGGGCTGTGCGCGGAGCTGGGCAAGGCCCGACTCAGGTACGTTTG
ATGTGCTAAAAGCGAAGGCCGGAGAGAGGCATGCACGGATGGAAGGAGAG
AAGAGCAAGTAGAAGCTCTGCTAGGGAGGCAGATGCATGGTTTTATGCGA
GGTTGAGACGGACGCTGCCAAAATATCTCTCTCGCCTGCTTTTTTTTTTC
CTTCCCTCGTCAACGATCACTTCATCCCTTGCCCCCCTTTCCTCTTTCAC
CCACTTCATAGCGCCCTCGTCGTTCTCACCACATCGGCCGGCTTTCTAGC
CGCTGGTGGACCTGTCGCCTGGGTCCCCCTGACAGCAGTGTCGGTGGGCA
CCATGCTTGCTGCATGCTCGGCCAACACCTTCAACCAACTCATCGAAACA
GGAAATGACCGGCTCATGAAACGCACCTTCCTCCGCCCTCTCCCCTCTGG
GCGTGCCTCGCGTCCTTTCGCCATGGCTTGGGGGCTAGGGAGTGCTGGGG
CCTCTGCTGCAATTCTAGCAGCAGGTACTACCCCTCTTACGATCGCCCTG
GGGATGGGTAATTTGGCACTGTACGCCTTGCCATACACGTTGAGCAAGAC
GAGGAGTGAGATCAACACATGGATAGGGGCGGTGGTGGGGGCAGTCCCCC
CCCTGATGGGTTGGGCGGCTGCGACGGAATGTACGAGCCTCGCGACCCTC
TTGTCAACTCCCGACGCCATGTTGCTCGCGGGAGCCTTGTTTTTGTGGCA
GTTTCCGCATTTCTTTGCCCTGTCCTGGGTGCATCGAAAGGACTATGCAA
GAGGGGGGTTTAAGATGGTGCCTTGTGCGGACCCCGGGGGGGGGAGGACG
GCCGAGTTGATCTGGCGCTATAGCCTATACTTGGCGCCCTTGCCCCTCCT
CGCCACAGGCATGGGGGTGACGGGGAGCATGTTCGCCTTGGAAGGGTCAT
TCTTGAATGCATACCTCGTATATTTGGCGGGGAGGTTCAGGAAGGAGCGG
ACGGATGAACGGGCACGGGCAGTATTCCGGTGTTCGTTGTGGTACTTGCC
TGTGCTGCTTGGAGGCTTTGTATTTCACAGCAAGCAGTGGGACGTGGAGA
AGGTGAAGGAGGGAGAGGAGGAGATGGAGGGCGGCATGACTATGGAGGCT
TTGGTGGCGGGGGCGAGGAAGCAGCTGACGAAGGTGTGTGTGCATGAGGT
GCTGGTACAGGAGGGGAAGAATATGCATGCGGGCGTGTTGTGTCCACCGG
TGGTGGCGATCAACGTGGTGGAAGAGACGAAAGAGGTCGTGGGGAAGGTG
AGGGAAGAGGCAGAGAAGGTGGGAGGAGTGCAGGTGCATTTGACGCTATC
GGCACCAAAGTCGACAGGAGGAGGAGGGAGGGAGTGAGGGGGTGAGGGGC
GAGGTTTTGGTGAATGTTTATATAATGAAGAGGGCAGGGCATAGACAGAC
GACGAGAGGCGAACAAGCGCAAGAAAGAAAGAAGCAAAGAAAACAGCCAG
A
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Coding sequence (CDS) from alignment at chr6:211838..213638+

>NO06G00520.1 ID=NO06G00520.1|Name=NO06G00520.1|organism=Nannochloropsis oceanica|type=CDS|length=1443bp|location=Sequence derived from alignment at chr6:211838..213638+ (Nannochloropsis oceanica)
ATGTGGAGACAACTCTCCCCCTCGTCCGCCTCCTGCTGCAGGCTATTGTT
AGCAGCATCGACGGCAGCAAGAAGACCACAACACCTTGCGTCGGCAACAA
GCATCCGCCGCACCTCCTCTCCCTCCTCCTCCTCATCATCATCATCTTTC
ACTCCTACACCCAAATCCATCGCGCCCCTGACAAGTGGCAGCAGTCACCT
CGACGCAGCTGCTTCGGAGGGGAAAGTAACCCCGCCATCACCGTCGCCCA
TCAAGGAGGCGTCGGGCTTGAGAAATGTAGTGGGGCTGTGCGCGGAGCTG
GGCAAGGCCCGACTCAGCGCCCTCGTCGTTCTCACCACATCGGCCGGCTT
TCTAGCCGCTGGTGGACCTGTCGCCTGGGTCCCCCTGACAGCAGTGTCGG
TGGGCACCATGCTTGCTGCATGCTCGGCCAACACCTTCAACCAACTCATC
GAAACAGGAAATGACCGGCTCATGAAACGCACCTTCCTCCGCCCTCTCCC
CTCTGGGCGTGCCTCGCGTCCTTTCGCCATGGCTTGGGGGCTAGGGAGTG
CTGGGGCCTCTGCTGCAATTCTAGCAGCAGGTACTACCCCTCTTACGATC
GCCCTGGGGATGGGTAATTTGGCACTGTACGCCTTGCCATACACGTTGAG
CAAGACGAGGAGTGAGATCAACACATGGATAGGGGCGGTGGTGGGGGCAG
TCCCCCCCCTGATGGGTTGGGCGGCTGCGACGGAATGTACGAGCCTCGCG
ACCCTCTTGTCAACTCCCGACGCCATGTTGCTCGCGGGAGCCTTGTTTTT
GTGGCAGTTTCCGCATTTCTTTGCCCTGTCCTGGGTGCATCGAAAGGACT
ATGCAAGAGGGGGGTTTAAGATGGTGCCTTGTGCGGACCCCGGGGGGGGG
AGGACGGCCGAGTTGATCTGGCGCTATAGCCTATACTTGGCGCCCTTGCC
CCTCCTCGCCACAGGCATGGGGGTGACGGGGAGCATGTTCGCCTTGGAAG
GGTCATTCTTGAATGCATACCTCGTATATTTGGCGGGGAGGTTCAGGAAG
GAGCGGACGGATGAACGGGCACGGGCAGTATTCCGGTGTTCGTTGTGGTA
CTTGCCTGTGCTGCTTGGAGGCTTTGTATTTCACAGCAAGCAGTGGGACG
TGGAGAAGGTGAAGGAGGGAGAGGAGGAGATGGAGGGCGGCATGACTATG
GAGGCTTTGGTGGCGGGGGCGAGGAAGCAGCTGACGAAGGTGTGTGTGCA
TGAGGTGCTGGTACAGGAGGGGAAGAATATGCATGCGGGCGTGTTGTGTC
CACCGGTGGTGGCGATCAACGTGGTGGAAGAGACGAAAGAGGTCGTGGGG
AAGGTGAGGGAAGAGGCAGAGAAGGTGGGAGGAGTGCAGGTGCATTTGAC
GCTATCGGCACCAAAGTCGACAGGAGGAGGAGGGAGGGAGTGA
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Synonyms
Publications