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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr6 | genome | chr6:205503..208115 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO06G00500.3 vs.
Match: EWM26092.1 (Uncharacterized protein family Cys-rich [Nannochloropsis gaditana]) HSP 1 Score: 193.4 bits (490), Expect = 7.100e-46 Identity = 108/201 (53.73%), Postives = 131/201 (65.17%), Query Frame = 0
Query: 3 RSLGSGFELVELQQQHVPGHCGLECPPLVLQLSPTGGGGGSGERGSVGSIDEHDYASAVSSAPSSSSSISGDRELPPEDEWRDGVCGCFRGFGLTACFATSYAQTSIMEELNSHTATRRLVLLLTVSLLWLTLPFTLYLKLYPLSLAAVCAVWVIEAAVACHLRRLVRRRYSIDGSEGGDCVISFCMPVCVTAQILRHLRG 204
RS GSGFELVEL H+PGHC PP + Q SPT R S + HD + SS+SS SGD+ELPPED WRDG+ CF GFG+ +CFATSYAQT M+ELNSHT+ +R+ LL V+ LW+ +P L+ +LY LS A W+IE+ VA LRR+ RRRYSI+GSE D S P CVTAQ+LRHLRG
Sbjct: 33 RSFGSGFELVELH--HIPGHC----PPFMSQTSPTVVVMDLESRKGRESREGHDCNA------SSASSCSGDKELPPEDAWRDGLFDCFSGFGVISCFATSYAQTHAMQELNSHTSLQRICLLTFVTTLWICVPVVLFFQLYALSSAIFAVSWIIESIVAFELRRITRRRYSIEGSEVEDVFASLFFPSCVTAQVLRHLRG 221
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO06G00500.3 ID=NO06G00500.3|Name=NO06G00500.3|organism=Nannochloropsis oceanica|type=mRNA|length=2476bp
TAAGAGCAGAAGATGCAGTGGCACGAACAAGTGAAAGCAAGTGAGGCGTG
CTGGCATGCCCTGAAACCCGAGGGAAACTTATGAAATCTCCCATTTTTGA
TGAAGAACAACAACCTCCTACTCTCTCCTGACCGGTTTCTCGACAGCCGT
TGGGCGTGACTCACGAGCCGTTTCACCAAACGACTGTCTGTCTGCCCCGC
AAGGAACTCGTTCCTTAATTGGTCGCTTCCTCTGTCTTCCTGGTTGTTCC
TTCTGACATACAACCCCTGAACTAGTGGTTGGACATTTTGCGATTTAACA
TGGTCTTTCTCTTTTCATCTTTCCTCTCACAGCACGTCCTCGGCCACGAG
CGGCATCAACACCACTGCTAGCGTTCCTGGCAACTGCAATTATTCCGATC
TGTCGAAGCGGTGCACCTTTTCTTCTCCTTTCTCCTTGGTCCTCATCCTT
ATGGCCGAGAGCAGTACTGATCCCTGCAATGGTGGTGGAAGTGGTAGTGG
CAGCGATTTGGACCTGGAAGAGGGCATGCAGCACGTCGGCAGCAGCTCAG
ACCTGCGCCCCACAAAGAGCGTTTCTCCGTCTCACGACGTAAATAAGTCC
AGCGCTCCTGACGGTAAATAAACGAGTGTGAGCACCGGAAGAGGCTTACA
AGGATGTGCTTGTGTTCGGCAGACAATCACATATAAGTTGCTCACACGCG
GCTGCTTCCCCGTCCAACCACAACCAACAGCTGGGTACAGCCCGACGTCC
ACGATCTCCACGGCCTTTTCCAGCGATGGCGAGAAGGAAAAGTACCTTGG
CAAAGTGCCCCGCAAAGAGCATCGGAAGGTAGGTGGGATGGGCGGGTATG
GACGAGGTGGTGCTTGAACGCTTATGAAGGAGCTACTTACTACTGGTAGG
ACGGCGTCCTTTCTTCTACAAAAACAGGTCAACATAGACCACTTTCCGCT
TACAACCCACTCTAAATTCACGTACTCTCTGCTCACACTCCCCCGGTCCA
TCCTTTCCTCCTCTTCAGATGACCCGCTCCCTCGGCTCGGGCTTCGAGCT
GGTGGAGCTGCAGCAACAACATGTCCCCGGCCACTGCGGCCTGGAGTGCC
CTCCTCTCGTCCTGCAACTCTCTCCCACCGGCGGTGGAGGAGGAAGTGGG
GAACGAGGGTCTGTTGGCTCGATCGATGAGCATGATTATGCGTCCGCTGT
GTCATCCGCACCCTCCTCCTCCTCGTCCATCAGTGGGGATAGGGAGCTAC
CTCCGGAAGATGAATGGCGGGATGGTGTGTGTGGATGCTTCAGGGGCTTT
GGTCTGACTGCCTGTTTTGCCACCAGTTATGCCCAAACTAGCATCATGGA
GGAGCTCAACAGCCACACCGCGACTCGGCGCCTGGTCCTTCTGCTCACTG
TCTCTCTTCTTTGGCTCACGCTCCCCTTCACCCTCTACCTGAAGCTCTAC
CCGCTTTCCCTGGCCGCGGTGTGTGCTGTGTGGGTGATAGAGGCAGCCGT
GGCCTGTCACTTACGTCGATTAGTGCGACGGCGGTACAGCATCGACGGGA
GCGAGGGAGGGGATTGTGTCATCAGCTTCTGCATGCCTGTGTGTGTGACT
GCGCAGATTTTGAGGCACCTGAGAGGGTGAGGGAGGCGGGGGGAAAGGGA
GGAAGGTGGGCATGGGTGGTAAGAGAAGGGGAGAAGATGAATTTCTACTC
ATGGCATGTCCCAGGGTTTGCAATATTTCAAACATGGAGGAAGAATAAAA
AGTAGGTGTATGTTTAAATAAAAAAGGGAACAGGAGACAGTGCTCCTACT
ACAATGGAAAGACAGAAAGCATGGCCGGATGGCTGTGTGGACTGAGTGAT
ATTACTAATTGATAGGGGGGGAGAAGAAAATAGAGTGTAAATTAGGGTAC
AGGGTAAGGGAGAGACCATATGGGAGGGACTTCCACATCAGCAAACAAAC
AAAAGTGAGTGTCAGACAGAGCATGCTATGATCACTCTGTCAATAGACGT
CTGCGTGGTGCGTAAGACGGTACTTCTGAAAGAGATGATACTACTTCTAG
GGGTAATACTACTGATTGAGAGCAGAAAGGGACGAATATGAATATGGAGT
CTGATACAGAGGAAACCGATCGACGCACAAGCAAGTCAACTGTGACCGTG
GGTCGCACAGATGTAACCTGGTCGAAGGGTAATATTATAATATTCGAGAG
GGCAAAAGGGCTATGGAATAAATCAGGACACTACCTAGAAAGGGTAGGAA
GAGAAAAGGCTCGAACCATGGTACAAATCGAATTGGGCGATACCTTGTCG
TCAGAGAGTGGGTATATAAGTAGCATCCACCGTACAGTATAACAAAGAAA
TCAAAATTAAGCGGAATGTCCAAACGACCTGAGGAGGTCATGCCCAGACT
CCATTTGTATATAAAAAGCGTCTGTGGGCTTTGTTAGCTTTGCGGTGCTG
TCTCGCCCGCCCTCGACTTCCGCACC back to topprotein sequence of NO06G00500.3 >NO06G00500.3-protein ID=NO06G00500.3-protein|Name=NO06G00500.3|organism=Nannochloropsis oceanica|type=polypeptide|length=204bp
MTRSLGSGFELVELQQQHVPGHCGLECPPLVLQLSPTGGGGGSGERGSVG
SIDEHDYASAVSSAPSSSSSISGDRELPPEDEWRDGVCGCFRGFGLTACF
ATSYAQTSIMEELNSHTATRRLVLLLTVSLLWLTLPFTLYLKLYPLSLAA
VCAVWVIEAAVACHLRRLVRRRYSIDGSEGGDCVISFCMPVCVTAQILRH
LRG* back to topmRNA from alignment at chr6:205503..208115- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO06G00500.3 ID=NO06G00500.3|Name=NO06G00500.3|organism=Nannochloropsis oceanica|type=mRNA|length=2613bp|location=Sequence derived from alignment at chr6:205503..208115- (Nannochloropsis oceanica)
TAAGAGCAGAAGATGCAGTGGCACGAACAAGTGAAAGCAAGTGAGGCGTG
CTGGCATGCCCTGAAACCCGAGGGAAACTTATGAAATCTCCCATTTTTGA
TGAAGAACAACAACCTCCTACTCTCTCCTGACCGGTTTCTCGACAGCCGT
TGGGCGTGACTCACGAGCCGTTTCACCAAACGACTGTCTGTCTGCCCCGC
AAGGAACTCGTTCCTTAATTGGTCGCTTCCTCTGTCTTCCTGGTTGTTCC
TTCTGACATACAACCCCTGAACTAGTGGTTGGACATTTTGCGATTTAACA
TGGTCTTTCTCTTTTCATCTTTCCTCTCACAGCACGTCCTCGGCCACGAG
CGGCATCAACACCACTGCTAGCGTTCCTGGCAACTGCAATTATTCCGATC
TGTCGAAGCGGTGCACCTTTTCTTCTCCTTTCTCCTTGGTCCTCATCCTT
ATGGCCGAGAGCAGTACTGATCCCTGCAATGGTGGTGGAAGTGGTAGTGG
CAGCGATTTGGACCTGGAAGAGGGCATGCAGCACGTCGGCAGCAGCTCAG
ACCTGCGCCCCACAAAGAGCGTTTCTCCGTCTCACGACGTAAATAAGTCC
AGCGCTCCTGACGGTAAATAAACGAGTGTGAGCACCGGAAGAGGCTTACA
AGGATGTGCTTGTGTTCGGCAGACAATCACATATAAGTTGCTCACACGCG
GCTGCTTCCCCGTCCAACCACAACCAACAGCTGGGTACAGCCCGACGTCC
ACGATCTCCACGGCCTTTTCCAGCGATGGCGAGAAGGAAAAGTACCTTGG
CAAAGTGCCCCGCAAAGAGCATCGGAAGGTAGGTGGGATGGGCGGGTATG
GACGAGGTGGTGCTTGAACGCTTATGAAGGAGCTACTTACTACTGGTAGG
ACGGCGTCCTTTCTTCTACAAAAACAGGTCAACATAGACCACTTTCCGCT
TACAACCCACTCTAAATTCACGTACTCTCTGCTCACACTCCCCCGGTCCA
TCCTTTCCTCCTCTTCAGATGACCCGCTCCCTCGGCTCGGGCTTCGAGCT
GGTGGAGCTGCAGCAACAACATGTCCCCGGCCACTGCGGCCTGGAGTGCC
CTCCTCTCGTCCTGCAACTCTCTCCCACCGGCGGTGGAGGAGGAAGTGGG
GAACGAGGGTCTGTTGGCTCGATCGATGAGCATGATTATGCGTCCGCTGT
GTCATCCGCACCCTCCTCCTCCTCGTCCATCAGTGGGGATAGGGAGCTAC
CTCCGGAAGATGAATGGCGGGATGGTGTGTGTGGATGCTTCAGGGGCTTT
GGTACGTGGAGTGAAGGGAAAGATGACGGAGGGAGGAGAAGGAGATTCGT
GTCCCTGCTCTATCTTGTTGCATGATTCGACTATGCCTGTTAATTTATCG
TCCCATTCCCTTTTGACATACCTTTCACCGATCACCAGGTCTGACTGCCT
GTTTTGCCACCAGTTATGCCCAAACTAGCATCATGGAGGAGCTCAACAGC
CACACCGCGACTCGGCGCCTGGTCCTTCTGCTCACTGTCTCTCTTCTTTG
GCTCACGCTCCCCTTCACCCTCTACCTGAAGCTCTACCCGCTTTCCCTGG
CCGCGGTGTGTGCTGTGTGGGTGATAGAGGCAGCCGTGGCCTGTCACTTA
CGTCGATTAGTGCGACGGCGGTACAGCATCGACGGGAGCGAGGGAGGGGA
TTGTGTCATCAGCTTCTGCATGCCTGTGTGTGTGACTGCGCAGATTTTGA
GGCACCTGAGAGGGTGAGGGAGGCGGGGGGAAAGGGAGGAAGGTGGGCAT
GGGTGGTAAGAGAAGGGGAGAAGATGAATTTCTACTCATGGCATGTCCCA
GGGTTTGCAATATTTCAAACATGGAGGAAGAATAAAAAGTAGGTGTATGT
TTAAATAAAAAAGGGAACAGGAGACAGTGCTCCTACTACAATGGAAAGAC
AGAAAGCATGGCCGGATGGCTGTGTGGACTGAGTGATATTACTAATTGAT
AGGGGGGGAGAAGAAAATAGAGTGTAAATTAGGGTACAGGGTAAGGGAGA
GACCATATGGGAGGGACTTCCACATCAGCAAACAAACAAAAGTGAGTGTC
AGACAGAGCATGCTATGATCACTCTGTCAATAGACGTCTGCGTGGTGCGT
AAGACGGTACTTCTGAAAGAGATGATACTACTTCTAGGGGTAATACTACT
GATTGAGAGCAGAAAGGGACGAATATGAATATGGAGTCTGATACAGAGGA
AACCGATCGACGCACAAGCAAGTCAACTGTGACCGTGGGTCGCACAGATG
TAACCTGGTCGAAGGGTAATATTATAATATTCGAGAGGGCAAAAGGGCTA
TGGAATAAATCAGGACACTACCTAGAAAGGGTAGGAAGAGAAAAGGCTCG
AACCATGGTACAAATCGAATTGGGCGATACCTTGTCGTCAGAGAGTGGGT
ATATAAGTAGCATCCACCGTACAGTATAACAAAGAAATCAAAATTAAGCG
GAATGTCCAAACGACCTGAGGAGGTCATGCCCAGACTCCATTTGTATATA
AAAAGCGTCTGTGGGCTTTGTTAGCTTTGCGGTGCTGTCTCGCCCGCCCT
CGACTTCCGCACC back to topCoding sequence (CDS) from alignment at chr6:205503..208115- >NO06G00500.3 ID=NO06G00500.3|Name=NO06G00500.3|organism=Nannochloropsis oceanica|type=CDS|length=612bp|location=Sequence derived from alignment at chr6:205503..208115- (Nannochloropsis oceanica)
ATGACCCGCTCCCTCGGCTCGGGCTTCGAGCTGGTGGAGCTGCAGCAACA
ACATGTCCCCGGCCACTGCGGCCTGGAGTGCCCTCCTCTCGTCCTGCAAC
TCTCTCCCACCGGCGGTGGAGGAGGAAGTGGGGAACGAGGGTCTGTTGGC
TCGATCGATGAGCATGATTATGCGTCCGCTGTGTCATCCGCACCCTCCTC
CTCCTCGTCCATCAGTGGGGATAGGGAGCTACCTCCGGAAGATGAATGGC
GGGATGGTGTGTGTGGATGCTTCAGGGGCTTTGGTCTGACTGCCTGTTTT
GCCACCAGTTATGCCCAAACTAGCATCATGGAGGAGCTCAACAGCCACAC
CGCGACTCGGCGCCTGGTCCTTCTGCTCACTGTCTCTCTTCTTTGGCTCA
CGCTCCCCTTCACCCTCTACCTGAAGCTCTACCCGCTTTCCCTGGCCGCG
GTGTGTGCTGTGTGGGTGATAGAGGCAGCCGTGGCCTGTCACTTACGTCG
ATTAGTGCGACGGCGGTACAGCATCGACGGGAGCGAGGGAGGGGATTGTG
TCATCAGCTTCTGCATGCCTGTGTGTGTGACTGCGCAGATTTTGAGGCAC
CTGAGAGGGTGA back to top
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