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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr6 | genome | chr6:202614..205363 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO06G00490.1 vs.
Match: EWM26079.1 (cobalamin synthesis protein p47k [Nannochloropsis gaditana]) HSP 1 Score: 765.0 bits (1974), Expect = 2.100e-217 Identity = 466/724 (64.36%), Postives = 528/724 (72.93%), Query Frame = 0
Query: 3 PCLSPLLVLLLIAGLCSVSLAFLPSSPHHRHTTTAIQRATCPATATVAITVSQPLGCWWQHPRWQQYTSTPVAA--------PATTSLTSLW-SATADGTTNPNPSSLPEASSDGPVEDKRVPITLVSGFLGSGKTTLLKHILENKEGLRVGVVVNDMAEINIDAKLLRNGPDQTEKDDTVELQNGCACCTMRDELFNALYELLTLAQLRGVTYDHIVIETTGIAEPKAIRGNFHAAEDYAMPLLDVVRLDTMVTVVDSSVFLDAYTSRDTLLKRPELGLNELMEAEGRGEEGVYSLDIETRATAQREVAELLVEQIEYADVVILNKDGLLPAPRRSLLREVVQTLNPWAVVVPANYSQVHLEEFLGVNEGRMGVALGGALDDHKEAVEGSMRLAQEAAAAVAARKGEREGGHGHSAIVHKHGKEGEAAAVDHSHKAEKEEHKHAHSQSHSHDEEEETENLNHDHSHSHDDHDDEHSHDHDHTHSHDGHHHHDHGHEHEHDHSNPGKTASQTTAETRFRIGTFIYLQRKPFHPDRFADFLEEMAASSYTAVENVVGAKVKTASGEGFGTSSSFPPSSPSSSSSSSLVTSVLSGLLRSKGFLWLACTDQAALYFSHAGRALSVSCMGRWWASVPRESWPEGREKDIWEDFGGEGEGGREGGFGDRRNELVFIGVGLFEEERQQALKERLDACLLTGEEGEGREGGWGGEMGLYVVKAEEGSALAL 718
P ++PLL LL+ C V+LAFL S +Q+ T P ++ +A + + + + +Q TS + P ++S TSLW SA++ TT S+ EASS D RVPITL+SGFLGSGKTTLLKHILENK+G+RVGV+VNDMA +NIDAKLLRN P+Q E++ TVELQNGCACCTMRDELFNALYELLTLAQLRGVTYDHIVIETTGIAEPKAIR NFHAAEDY MPLLD+VRLDTMVTVVDSSVFLDAYTSRD+LLKRPELGL E+M++ G G+ SLDIE RATAQREVAELLVEQ+EYADVVILNKDGLL P R+LL EV QTLNPWA+VVPANYS+V LE+FLGVNEGRMGVALGGALDDHKEAVEGS RLAQE AA A+R+ +EGG G S G A + EHKH HS HDH HSHD H H HDH HSHD H HDH H H+H HS+ GKTAS+TTA +RF+IGT+IYL+RKPFHP RFAD LEEMAA+SY AVENV+ K + PS P S+SSSL++SVLSGLLRSKGFLWLACTDQAALYFS AGR+L+VSCMGRWWASVP+E W R +DI DF EGE GFGDRRNELVFIGV LFEEERQ+ L+ERLDACLLTGEE EG GGW GEM YV KA SALAL
Sbjct: 5 PLVAPLLFLLVTGERCPVTLAFLSSWA----PVMPLQQVT-PLSSNIASSPTTSMSSSQRLQSQRQTTSLATSCTFRGGEVIPPSSSSTSLWNSASSTDTTQSRDPSVDEASSALMDRDNRVPITLISGFLGSGKTTLLKHILENKDGIRVGVIVNDMAAVNIDAKLLRNDPNQGERE-TVELQNGCACCTMRDELFNALYELLTLAQLRGVTYDHIVIETTGIAEPKAIRSNFHAAEDYEMPLLDLVRLDTMVTVVDSSVFLDAYTSRDSLLKRPELGLAEMMQSGPEG--GIRSLDIEARATAQREVAELLVEQVEYADVVILNKDGLLAHPSRALLAEVAQTLNPWALVVPANYSRVPLEDFLGVNEGRMGVALGGALDDHKEAVEGSARLAQEQAA--ASRQTRKEGGEGDS---------GGAVGL---------EHKHDHS---------------HDHQHSHD-----HQHSHDHQHSHDHQHSHDHQHSHDHQHSH-GKTASETTARSRFQIGTYIYLRRKPFHPGRFADLLEEMAATSYAAVENVMAPK-----------TGGHAPSPP--SASSSLLSSVLSGLLRSKGFLWLACTDQAALYFSQAGRSLAVSCMGRWWASVPQEQWAVERVEDILGDF-PEGEA---KGFGDRRNELVFIGVDLFEEERQRVLRERLDACLLTGEEAEG--GGWEGEMKTYVEKAGNASALAL 660
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO06G00490.1 ID=NO06G00490.1|Name=NO06G00490.1|organism=Nannochloropsis oceanica|type=mRNA|length=2379bp
AAACACACAGCGTCAAAGATGACACCGTGCCTGTCACCACTGCTGGTACT
GCTGCTGATTGCCGGGCTTTGCAGCGTCTCCCTGGCTTTCCTGCCCTCCT
CTCCCCACCACCGGCACACCACGACGGCGATTCAACGAGCAACTTGTCCT
GCGACGGCTACTGTTGCCATCACCGTCTCCCAACCACTAGGCTGTTGGTG
GCAGCACCCAAGATGGCAGCAATATACCTCCACCCCAGTTGCTGCCCCGG
CCACGACCTCGTTAACGTCACTGTGGAGCGCCACTGCGGACGGCACTACC
AACCCCAACCCATCCTCCCTCCCAGAGGCCTCTTCCGATGGCCCTGTTGA
GGACAAGCGTGTGCCCATTACCCTAGTCTCAGGCTTCCTCGGCTCGGGCA
AGACGACGTTGCTCAAGCACATCCTGGAAAATAAGGAGGGGCTGAGGGTG
GGCGTGGTCGTCAATGACATGGCCGAGATCAACATCGATGCCAAGCTGCT
CCGGAATGGCCCTGATCAGACTGAGAAGGATGATACGGTGGAGCTGCAAA
ATGGTTGTGCGTGCTGTACCATGCGTGACGAGCTATTCAATGCGCTGTAC
GAGTTGCTAACTTTGGCCCAGCTGCGAGGCGTGACGTACGATCACATCGT
CATCGAAACCACTGGCATCGCCGAACCCAAGGCGATTCGGGGCAACTTCC
ACGCGGCCGAAGACTATGCCATGCCTCTTTTGGACGTGGTGCGACTAGAC
ACCATGGTAACGGTGGTGGACAGTAGCGTCTTCCTCGACGCCTACACCAG
CAGGGACACTTTGCTCAAGCGCCCTGAGCTGGGCTTGAACGAATTGATGG
AAGCCGAGGGGAGGGGGGAGGAAGGGGTCTACTCCTTAGACATCGAGACG
AGGGCCACGGCCCAACGGGAGGTGGCGGAGCTGCTCGTGGAGCAAATAGA
GTACGCGGACGTGGTGATCCTAAACAAGGATGGCCTCCTTCCCGCCCCCC
GTCGCTCCCTCCTCCGCGAGGTCGTGCAGACGCTCAACCCGTGGGCCGTG
GTGGTGCCCGCCAACTACAGCCAGGTCCATCTCGAGGAATTCCTGGGTGT
GAATGAAGGTCGGATGGGCGTTGCTCTAGGGGGAGCGCTCGACGATCACA
AAGAAGCAGTGGAGGGCTCCATGAGGCTGGCGCAGGAAGCGGCAGCAGCA
GTGGCGGCGAGGAAGGGAGAGAGGGAGGGAGGGCATGGACATAGTGCGAT
TGTTCATAAACACGGGAAGGAGGGTGAGGCAGCAGCAGTTGATCATAGCC
ATAAGGCCGAGAAGGAGGAGCACAAACATGCCCACTCCCAATCTCACTCC
CACGACGAGGAGGAGGAGACCGAAAACCTCAACCACGATCACTCTCACTC
CCACGATGACCACGACGACGAGCACTCCCACGATCATGACCATACTCATT
CCCACGATGGCCACCACCATCACGATCACGGTCACGAGCATGAGCATGAC
CACTCAAATCCCGGCAAGACGGCCAGTCAAACGACCGCCGAGACCCGCTT
CCGCATTGGCACCTTCATCTACCTGCAACGCAAGCCCTTCCATCCTGATC
GGTTCGCGGACTTTCTGGAAGAAATGGCGGCCAGCTCCTACACCGCGGTT
GAGAACGTAGTGGGTGCCAAGGTAAAGACGGCGAGTGGCGAGGGGTTTGG
CACCTCGTCCTCCTTCCCTCCCTCCTCCCCTTCCTCGTCCTCGTCCTCCT
CTCTTGTGACGAGCGTCCTTTCGGGCCTTCTCCGCTCCAAGGGCTTCCTT
TGGCTCGCCTGCACGGACCAAGCGGCCCTCTACTTTTCCCATGCCGGCCG
CGCTCTCTCGGTCTCGTGCATGGGCCGGTGGTGGGCATCGGTTCCCAGGG
AGTCTTGGCCTGAAGGGAGAGAGAAGGATATATGGGAGGACTTTGGAGGG
GAGGGGGAGGGAGGGAGGGAGGGAGGGTTTGGGGATCGGAGGAATGAATT
GGTTTTTATTGGAGTGGGGCTCTTCGAGGAGGAGAGGCAACAGGCTCTGA
AGGAGCGCTTGGATGCTTGCTTGTTGACAGGGGAGGAGGGAGAAGGAAGG
GAGGGCGGGTGGGGTGGAGAAATGGGGTTGTATGTAGTGAAGGCGGAGGA
GGGAAGTGCCTTGGCATTGTTTGATGCCTTTCCTAATCGGATTGAAATTG
ACATGGCGGGCGCGCCGGACCAACGGTAAGAAGGAAAGTAGGCCGTGCCA
TTGTCCAGGGTGAGAGTGAACAAGATTGGAGGCAGAGACAAAGCAGGGGT
TGAAGCGGCAGGAGGGGGGACGACACACAGATGACAGCCCCCTTCTGTTT
GTTTCCTACGGAGTTCCCCCCAATAAAAA back to topprotein sequence of NO06G00490.1 >NO06G00490.1-protein ID=NO06G00490.1-protein|Name=NO06G00490.1|organism=Nannochloropsis oceanica|type=polypeptide|length=737bp
MTPCLSPLLVLLLIAGLCSVSLAFLPSSPHHRHTTTAIQRATCPATATVA
ITVSQPLGCWWQHPRWQQYTSTPVAAPATTSLTSLWSATADGTTNPNPSS
LPEASSDGPVEDKRVPITLVSGFLGSGKTTLLKHILENKEGLRVGVVVND
MAEINIDAKLLRNGPDQTEKDDTVELQNGCACCTMRDELFNALYELLTLA
QLRGVTYDHIVIETTGIAEPKAIRGNFHAAEDYAMPLLDVVRLDTMVTVV
DSSVFLDAYTSRDTLLKRPELGLNELMEAEGRGEEGVYSLDIETRATAQR
EVAELLVEQIEYADVVILNKDGLLPAPRRSLLREVVQTLNPWAVVVPANY
SQVHLEEFLGVNEGRMGVALGGALDDHKEAVEGSMRLAQEAAAAVAARKG
EREGGHGHSAIVHKHGKEGEAAAVDHSHKAEKEEHKHAHSQSHSHDEEEE
TENLNHDHSHSHDDHDDEHSHDHDHTHSHDGHHHHDHGHEHEHDHSNPGK
TASQTTAETRFRIGTFIYLQRKPFHPDRFADFLEEMAASSYTAVENVVGA
KVKTASGEGFGTSSSFPPSSPSSSSSSSLVTSVLSGLLRSKGFLWLACTD
QAALYFSHAGRALSVSCMGRWWASVPRESWPEGREKDIWEDFGGEGEGGR
EGGFGDRRNELVFIGVGLFEEERQQALKERLDACLLTGEEGEGREGGWGG
EMGLYVVKAEEGSALALFDAFPNRIEIDMAGAPDQR* back to topmRNA from alignment at chr6:202614..205363- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO06G00490.1 ID=NO06G00490.1|Name=NO06G00490.1|organism=Nannochloropsis oceanica|type=mRNA|length=2750bp|location=Sequence derived from alignment at chr6:202614..205363- (Nannochloropsis oceanica)
AAACACACAGCGTCAAAGATGACACCGTGCCTGTCACCACTGCTGGTACT
GCTGCTGATTGCCGGGCTTTGCAGCGTCTCCCTGGCTTTCCTGCCCTCCT
CTCCCCACCACCGGCACACCACGACGGCGATTCAACGAGCAACTTGTCCT
GCGACGGCTACTGTTGCCATCACCGTCTCCCAACCACTAGGCTGTTGGTG
GCAGCACCCAAGATGGCAGCAATATACCTCCACCCCAGTTGCTGCCCCGG
CCACGACCTCGTTAACGTCACTGTGGAGCGCCACTGCGGACGGCACTACC
AACCCCAACCCATCCTCCCTCCCAGAGGCCTCTTCCGATGGCCCTGTTGA
GGACAAGCGTGTGCCCATTACCCTAGTCTCAGGCTTCCTCGGCTCGGGCA
AGACGACGTTGCTCAAGCACATCCTGGAAAATAAGGAGGGGCTGAGGGTG
GGCGTGGTCGTCAATGACATGGCCGAGATCAACATCGATGCCAAGCTGCT
CCGGAATGGCCCTGATCAGACTGAGAAGGATGATACGGTGGAGCTGCAAA
ATGGTTGTGCGTGCTGTACCATGCGTGACGAGCTATTCAATGCGCTGTAC
GAGTTGCTAACTTTGGCCCAGGTATGTCATAAATTTTGACCTTTTTTATT
AAAACTTCTCCGATGCAATGCTCCACCACGCACTGATCTCTCCCTCCCTC
CCTCTCTCCCTCTGTAGCTGCGAGGCGTGACGTACGATCACATCGTCATC
GAAACCACTGGCATCGCCGAACCCAAGGCGATTCGGGGCAACTTCCACGC
GGCCGAAGACTATGGTGCGAGAAGGGAGGAAGGGAGGGAGGGAAGGAAGG
AGGGAGGGAGGGAGGGAGATGATTTATTTCTGGTACAAGGTGCAGCGGAT
GGAAGATTCGTTCACCATCTCTTTCTTCTCTCCCGTATTCCTCCCTCCAG
CCATGCCTCTTTTGGACGTGGTGCGACTAGACACCATGGTAACGGTGGTG
GACAGTAGCGTCTTCCTCGACGCCTACACCAGCAGGGACACTTTGCTCAA
GCGCCCTGAGCTGGGCTTGAACGAATTGATGGAAGCCGAGGGGAGGGGGG
AGGAAGGGGTCTACTCCTTAGACATCGAGACGAGGGCCACGGCCCAACGG
GAGGTGGCGGAGCTGCTCGTGGAGCAAATAGAGTACGCGGACGTGGTGAT
CCTAAACAAGGATGGCCTCCTTCCCGCCCCCCGTCGCTCCCTCCTCCGCG
AGGTCGTGCAGACGCTCAACCCGTGGGCCGTGGTGGTGCCCGCCAACTAC
AGCCAGGTCCATCTCGAGGTAGGGCGGAAGGGAGGGAGAGAGGAGGGGGG
GGGAATCGCACTCCATGAGTTGAGAGGTGTTTAGGGGACGCTCACCCTTG
ATGTCCCTCCGTATGTCTCCCTCCCTCTCTCTTTCCCTCGCTCCCTCCCC
TATATAGGAATTCCTGGGTGTGAATGAAGGTCGGATGGGCGTTGCTCTAG
GGGGAGCGCTCGACGATCACAAAGAAGCAGTGGAGGGCTCCATGAGGCTG
GCGCAGGAAGCGGCAGCAGCAGTGGCGGCGAGGAAGGGAGAGAGGGAGGG
AGGGCATGGACATAGTGCGATTGTTCATAAACACGGGAAGGAGGGTGAGG
CAGCAGCAGTTGATCATAGCCATAAGGCCGAGAAGGAGGAGCACAAACAT
GCCCACTCCCAATCTCACTCCCACGACGAGGAGGAGGAGACCGAAAACCT
CAACCACGATCACTCTCACTCCCACGATGACCACGACGACGAGCACTCCC
ACGATCATGACCATACTCATTCCCACGATGGCCACCACCATCACGATCAC
GGTCACGAGCATGAGCATGACCACTCAAATCCCGGCAAGACGGCCAGTCA
AACGACCGCCGAGACCCGCTTCCGCATTGGCACCTTCATCTACCTGCAAC
GCAAGCCCTTCCATCCTGATCGGTTCGCGGACTTTCTGGAAGAAATGGCG
GCCAGCTCCTACACCGCGGTTGAGAACGTAGTGGGTGCCAAGGTAAAGAC
GGCGAGTGGCGAGGGGTTTGGCACCTCGTCCTCCTTCCCTCCCTCCTCCC
CTTCCTCGTCCTCGTCCTCCTCTCTTGTGACGAGCGTCCTTTCGGGCCTT
CTCCGCTCCAAGGGCTTCCTTTGGCTCGCCTGCACGGACCAAGCGGCCCT
CTACTTTTCCCATGCCGGCCGCGCTCTCTCGGTCTCGTGCATGGGCCGGT
GGTGGGCATCGGTTCCCAGGGAGTCTTGGCCTGAAGGGAGAGAGAAGGAT
ATATGGGAGGACTTTGGAGGGGAGGGGGAGGGAGGGAGGGAGGGAGGGTT
TGGGGATCGGAGGAATGAATTGGTTTTTATTGGAGTGGGGCTCTTCGAGG
AGGAGAGGCAACAGGCTCTGAAGGAGCGCTTGGATGCTTGCTTGTTGACA
GGGGAGGAGGGAGAAGGAAGGGAGGGCGGGTGGGGTGGAGAAATGGGGTT
GTATGTAGTGAAGGCGGAGGAGGGAAGTGCCTTGGCATTGTTTGATGCCT
TTCCTAATCGGATTGAAATTGACATGGCGGGCGCGCCGGACCAACGGTAA
GAAGGAAAGTAGGCCGTGCCATTGTCCAGGGTGAGAGTGAACAAGATTGG
AGGCAGAGACAAAGCAGGGGTTGAAGCGGCAGGAGGGGGGACGACACACA
GATGACAGCCCCCTTCTGTTTGTTTCCTACGGAGTTCCCCCCAATAAAAA
back to topCoding sequence (CDS) from alignment at chr6:202614..205363- >NO06G00490.1 ID=NO06G00490.1|Name=NO06G00490.1|organism=Nannochloropsis oceanica|type=CDS|length=2211bp|location=Sequence derived from alignment at chr6:202614..205363- (Nannochloropsis oceanica)
ATGACACCGTGCCTGTCACCACTGCTGGTACTGCTGCTGATTGCCGGGCT
TTGCAGCGTCTCCCTGGCTTTCCTGCCCTCCTCTCCCCACCACCGGCACA
CCACGACGGCGATTCAACGAGCAACTTGTCCTGCGACGGCTACTGTTGCC
ATCACCGTCTCCCAACCACTAGGCTGTTGGTGGCAGCACCCAAGATGGCA
GCAATATACCTCCACCCCAGTTGCTGCCCCGGCCACGACCTCGTTAACGT
CACTGTGGAGCGCCACTGCGGACGGCACTACCAACCCCAACCCATCCTCC
CTCCCAGAGGCCTCTTCCGATGGCCCTGTTGAGGACAAGCGTGTGCCCAT
TACCCTAGTCTCAGGCTTCCTCGGCTCGGGCAAGACGACGTTGCTCAAGC
ACATCCTGGAAAATAAGGAGGGGCTGAGGGTGGGCGTGGTCGTCAATGAC
ATGGCCGAGATCAACATCGATGCCAAGCTGCTCCGGAATGGCCCTGATCA
GACTGAGAAGGATGATACGGTGGAGCTGCAAAATGGTTGTGCGTGCTGTA
CCATGCGTGACGAGCTATTCAATGCGCTGTACGAGTTGCTAACTTTGGCC
CAGCTGCGAGGCGTGACGTACGATCACATCGTCATCGAAACCACTGGCAT
CGCCGAACCCAAGGCGATTCGGGGCAACTTCCACGCGGCCGAAGACTATG
CCATGCCTCTTTTGGACGTGGTGCGACTAGACACCATGGTAACGGTGGTG
GACAGTAGCGTCTTCCTCGACGCCTACACCAGCAGGGACACTTTGCTCAA
GCGCCCTGAGCTGGGCTTGAACGAATTGATGGAAGCCGAGGGGAGGGGGG
AGGAAGGGGTCTACTCCTTAGACATCGAGACGAGGGCCACGGCCCAACGG
GAGGTGGCGGAGCTGCTCGTGGAGCAAATAGAGTACGCGGACGTGGTGAT
CCTAAACAAGGATGGCCTCCTTCCCGCCCCCCGTCGCTCCCTCCTCCGCG
AGGTCGTGCAGACGCTCAACCCGTGGGCCGTGGTGGTGCCCGCCAACTAC
AGCCAGGTCCATCTCGAGGAATTCCTGGGTGTGAATGAAGGTCGGATGGG
CGTTGCTCTAGGGGGAGCGCTCGACGATCACAAAGAAGCAGTGGAGGGCT
CCATGAGGCTGGCGCAGGAAGCGGCAGCAGCAGTGGCGGCGAGGAAGGGA
GAGAGGGAGGGAGGGCATGGACATAGTGCGATTGTTCATAAACACGGGAA
GGAGGGTGAGGCAGCAGCAGTTGATCATAGCCATAAGGCCGAGAAGGAGG
AGCACAAACATGCCCACTCCCAATCTCACTCCCACGACGAGGAGGAGGAG
ACCGAAAACCTCAACCACGATCACTCTCACTCCCACGATGACCACGACGA
CGAGCACTCCCACGATCATGACCATACTCATTCCCACGATGGCCACCACC
ATCACGATCACGGTCACGAGCATGAGCATGACCACTCAAATCCCGGCAAG
ACGGCCAGTCAAACGACCGCCGAGACCCGCTTCCGCATTGGCACCTTCAT
CTACCTGCAACGCAAGCCCTTCCATCCTGATCGGTTCGCGGACTTTCTGG
AAGAAATGGCGGCCAGCTCCTACACCGCGGTTGAGAACGTAGTGGGTGCC
AAGGTAAAGACGGCGAGTGGCGAGGGGTTTGGCACCTCGTCCTCCTTCCC
TCCCTCCTCCCCTTCCTCGTCCTCGTCCTCCTCTCTTGTGACGAGCGTCC
TTTCGGGCCTTCTCCGCTCCAAGGGCTTCCTTTGGCTCGCCTGCACGGAC
CAAGCGGCCCTCTACTTTTCCCATGCCGGCCGCGCTCTCTCGGTCTCGTG
CATGGGCCGGTGGTGGGCATCGGTTCCCAGGGAGTCTTGGCCTGAAGGGA
GAGAGAAGGATATATGGGAGGACTTTGGAGGGGAGGGGGAGGGAGGGAGG
GAGGGAGGGTTTGGGGATCGGAGGAATGAATTGGTTTTTATTGGAGTGGG
GCTCTTCGAGGAGGAGAGGCAACAGGCTCTGAAGGAGCGCTTGGATGCTT
GCTTGTTGACAGGGGAGGAGGGAGAAGGAAGGGAGGGCGGGTGGGGTGGA
GAAATGGGGTTGTATGTAGTGAAGGCGGAGGAGGGAAGTGCCTTGGCATT
GTTTGATGCCTTTCCTAATCGGATTGAAATTGACATGGCGGGCGCGCCGG
ACCAACGGTAA back to top
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