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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr6 | genome | chr6:198499..200392 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO06G00470.5 vs.
Match: XP_005852506.1 (lipoyl(octanoyl) transferase [Nannochloropsis gaditana CCMP526]; EKU23325.1 lipoyl(octanoyl) transferase [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 335.1 bits (858), Expect = 1.700e-88 Identity = 165/225 (73.33%), Postives = 191/225 (84.89%), Query Frame = 0
Query: 1 MLVLEHTPVYTMGRSAKPEDLKFPREEMEEEKKGGKKGRGFEVYTSDRGGQVTWHGPGQVVMYPIIDLTHHKRDLRWYVRGMEEVVLRVLASHGVTGQRDEKHTGVWVEEKGGKGREEGGGGLIKVAAIGVSASRWITCHGLALNVNPDLKAFDAIVPCGVKDRRVGCLKDFLSAEKAAKLTTAQVRYELMEAFEEVFTSMELCVQEKKGPMLWQVEEVVLVDEE 226
MLVLEH+PVYT+GRSAKP D+KFP E G+ GRGFEV+ +DRGGQVTWHGPGQ+V+YP++DLTHHK+DLRWYVRG+EEVVLRVLA HGV GQRDEKHTGVWV+E+G +G E L KVAAIGVSASRW+TCHGLALNV+PDL+AF++IVPCGV+DRRVGCLK LS AA+LTTAQVRYELMEAFE+VF SMELCVQEKK + V+E+VL DEE
Sbjct: 57 MLVLEHSPVYTLGRSAKPGDVKFPLVEGT-----GQGGRGFEVFKTDRGGQVTWHGPGQIVIYPVVDLTHHKKDLRWYVRGLEEVVLRVLALHGVEGQRDEKHTGVWVKEQGPEGEE-----LTKVAAIGVSASRWVTCHGLALNVDPDLRAFESIVPCGVRDRRVGCLKTLLSPHVAAELTTAQVRYELMEAFEDVFPSMELCVQEKKDQLKGTVDEMVLEDEE 271
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO06G00470.5 ID=NO06G00470.5|Name=NO06G00470.5|organism=Nannochloropsis oceanica|type=mRNA|length=1780bp AAAACGCGGCATGCTTGAGTCCTGGATGTGATTGTTTGTAGGTTGTAGAG GGTTAGAAATGCCGGTTGCAGGGAAAGCTTCTAGGGGTGAGGGCGGGGTG GGAAGGCTATGCAGACACGGCATTGAGAGCGTCTGTGACCCAAAAAGTGA CACTTTCTTACGTTCAACAAGAGGAACTCATACTTTGTGAATCTGTCTGA GTCTATCGCTGTCCCCCGGCACATGTCTGGGCCTGTCGGTGTCCACTCGA AACACAAATGTGTGAGGATATTTGCGATGTTGCCTTCGTTGATGCTGGCG ATATCGACCTCCTGCCTCTCGTATTTCACACAATTCCCCCAACCACCAAC CACACTGCGCAGGCGGCAGCCACGAGCTAGCCATGACGGCAGCCGCACTA GCAGCAGGTGCTATGCGGATGGGTTTGCGCCGGCGGGTGGCAACGCTCAA CATCCAAGGTAAGTTGCAGCAGTCGATGACGAGACTTCTGTTTGGGATCG ATGACACGTAACTCTTCTTCCCCACGCTTTTCTATCTCACGCATGCACAG GTCTTGTCCCTTACGCCTCAGCCTGGCAGCTGCAGCGTGAGCTTGTCGCC CAACGCATCGCCTGGCAAAAGGAGGAACGGTACGTGTCCTCTCTCTCCCC CCTTTCCCTTTCCCTGTTTGTTCCCAATCACGACGTCACCCTCACCTTTC CTCCCTCCCTCCCTTTCTTCCTTAAGAGCCGGGTACGACGCTATGCTAGT GCTCGAGCACACGCCCGTCTATACCATGGGTCGATCTGCCAAGCCGGAGG ACTTAAAATTCCCCCGGGAAGAGATGGAGGAAGAGAAGAAGGGAGGGAAG AAGGGAAGGGGATTTGAAGTCTACACATCAGATAGAGGGGGACAAGTCAC ATGGCACGGGCCTGGGCAAGTAGTCATGTACCCCATCATTGATCTCACCC ACCACAAGAGGGATTTAAGGTGGTATGTTCGTGGCATGGAAGAAGTAGTA CTACGAGTGCTGGCCTCCCATGGAGTCACCGGACAAAGGGACGAGAAACA CACGGGTGTGTGGGTAGAGGAGAAGGGAGGGAAAGGGAGGGAGGAAGGAG GAGGGGGGCTGATAAAGGTGGCGGCGATTGGGGTGTCTGCGAGTAGATGG ATTACTTGCCACGGGTTGGCGCTGAATGTGAACCCGGACCTGAAGGCGTT TGATGCGATAGTTCCCTGTGGAGTAAAGGATCGACGGGTTGGGTGCCTTA AGGATTTCTTGTCTGCTGAAAAGGCGGCCAAATTGACCACTGCTCAAGTC CGCTACGAGCTGATGGAGGCATTCGAGGAGGTGTTCACGTCAATGGAATT GTGTGTACAGGAGAAAAAGGGGCCAATGCTATGGCAGGTGGAGGAGGTGG TGCTTGTGGACGAAGAGGATCGGGAGGAATGTATGTGATAAGCGGTTCTC TTGCGAGAAGAGGGAGCAGGAGAAGTACACGGATTTACCTCTTGATTCCT TCCCTCCCTCCCTCGATGGATGTCTGTGTGTTGAAAGGGCAAGCTGTTGG GAGGGAAACAGGGAGTGGTGTCGCGAGAGGTGGCGGGTACAAAGGAATGT ATCCAGAGTGAGAAGAGACTGGGAGCGAATGTAATTAGTTACATATCGGA TTACAAACTTGAAAGTTAGACAGGCGAAAACTGAAGTCGCGAGGGGATAT GCATATGGAAGAGGCTGCAAAAAAAAGAAAAAGATCAATAAGCCAATACA ACCACATAGTCGGACAAGGTAAAATAAACT back to topprotein sequence of NO06G00470.5 >NO06G00470.5-protein ID=NO06G00470.5-protein|Name=NO06G00470.5|organism=Nannochloropsis oceanica|type=polypeptide|length=232bp MLVLEHTPVYTMGRSAKPEDLKFPREEMEEEKKGGKKGRGFEVYTSDRGG QVTWHGPGQVVMYPIIDLTHHKRDLRWYVRGMEEVVLRVLASHGVTGQRD EKHTGVWVEEKGGKGREEGGGGLIKVAAIGVSASRWITCHGLALNVNPDL KAFDAIVPCGVKDRRVGCLKDFLSAEKAAKLTTAQVRYELMEAFEEVFTS MELCVQEKKGPMLWQVEEVVLVDEEDREECM* back to topmRNA from alignment at chr6:198499..200392- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO06G00470.5 ID=NO06G00470.5|Name=NO06G00470.5|organism=Nannochloropsis oceanica|type=mRNA|length=1894bp|location=Sequence derived from alignment at chr6:198499..200392- (Nannochloropsis oceanica) AAAACGCGGCATGCTTGAGTCCTGGATGTGATTGTTTGTAGGTTGTAGAG
GGTTAGAAATGCCGGTTGCAGGGAAAGCTTCTAGGGGTGAGGGCGGGGTG
GGAAGGCTATGCAGACACGGCATTGAGAGCGTCTGTGACCCAAAAAGTGA
CACTTTCTTACGTTCAACAAGAGGAACTCATACTTTGTGAATCTGTCTGA
GTCTATCGCTGTCCCCCGGCACATGTCTGGGCCTGTCGGTGTCCACTCGA
AACACAAATGTGTGAGGATATTTGCGATGTTGCCTTCGTTGATGCTGGCG
ATATCGACCTCCTGCCTCTCGTATTTCACACAATTCCCCCAACCACCAAC
CACACTGCGCAGGCGGCAGCCACGAGCTAGCCATGACGGCAGCCGCACTA
GCAGCAGGTGCTATGCGGATGGGTTTGCGCCGGCGGGTGGCAACGCTCAA
CATCCAAGGTAAGTTGCAGCAGTCGATGACGAGACTTCTGTTTGGGATCG
ATGACACGTAACTCTTCTTCCCCACGCTTTTCTATCTCACGCATGCACAG
GTCTTGTCCCTTACGCCTCAGCCTGGCAGCTGCAGCGTGAGCTTGTCGCC
CAACGCATCGCCTGGCAAAAGGAGGAACGGTACGTGTCCTCTCTCTCCCC
CCTTTCCCTTTCCCTGTTTGTTCCCAATCACGACGTCACCCTCACCTTTC
CTCCCTCCCTCCCTTTCTTCCTTAAGAGCCGGGTACGACGCTATGCTAGT
GCTCGAGCACACGCCCGTCTATACCATGGGTCGATCTGCCAAGCCGGAGG
ACTTAAAATTCCCCCGGGAAGAGATGGAGGAAGAGAAGAAGGGAGGGAAG
AAGGGAAGGGGATTTGAAGTCTACACATCAGATAGAGGGGGACAAGTCAC
ATGGCACGGGCCTGGGCAAGTAGTCATGTACCCCATCATTGATCTCACCC
ACCACAAGAGGGATTTAAGGTGGTATGTTCGTGGCATGGAAGAAGTAGTA
CTACGAGTGCTGGCCTCCCATGGAGTCACCGGACAAAGGGACGAGAAACA
CACGGGTGTGTGGGTAGAGGAGAAGGGAGGGAAAGGGAGGGAGGAAGGAG
GAGGGGGGCTGATAAAGGTGGCGGCGATTGGGGTGTCTGCGAGTAGATGG
ATTACTTGCCACGGGTTGGCGCTGAATGTGAACCCGGACCTGAAGGCGTT
TGATGCGATAGTTCCCTGTGGAGTAAAGGATCGACGGGTTGGGTAAGTCT
ACTTTCATATTATACTATTATACGTACTTGATTTATTTTTCATGAGTATC
CTTTGACTTGTTCATTTATATACGTATTTATGCGTTTTATTCATTCACTC
ATATAGGTGCCTTAAGGATTTCTTGTCTGCTGAAAAGGCGGCCAAATTGA
CCACTGCTCAAGTCCGCTACGAGCTGATGGAGGCATTCGAGGAGGTGTTC
ACGTCAATGGAATTGTGTGTACAGGAGAAAAAGGGGCCAATGCTATGGCA
GGTGGAGGAGGTGGTGCTTGTGGACGAAGAGGATCGGGAGGAATGTATGT
GATAAGCGGTTCTCTTGCGAGAAGAGGGAGCAGGAGAAGTACACGGATTT
ACCTCTTGATTCCTTCCCTCCCTCCCTCGATGGATGTCTGTGTGTTGAAA
GGGCAAGCTGTTGGGAGGGAAACAGGGAGTGGTGTCGCGAGAGGTGGCGG
GTACAAAGGAATGTATCCAGAGTGAGAAGAGACTGGGAGCGAATGTAATT
AGTTACATATCGGATTACAAACTTGAAAGTTAGACAGGCGAAAACTGAAG
TCGCGAGGGGATATGCATATGGAAGAGGCTGCAAAAAAAAGAAAAAGATC
AATAAGCCAATACAACCACATAGTCGGACAAGGTAAAATAAACT back to topCoding sequence (CDS) from alignment at chr6:198499..200392- >NO06G00470.5 ID=NO06G00470.5|Name=NO06G00470.5|organism=Nannochloropsis oceanica|type=CDS|length=696bp|location=Sequence derived from alignment at chr6:198499..200392- (Nannochloropsis oceanica) ATGCTAGTGCTCGAGCACACGCCCGTCTATACCATGGGTCGATCTGCCAA GCCGGAGGACTTAAAATTCCCCCGGGAAGAGATGGAGGAAGAGAAGAAGG GAGGGAAGAAGGGAAGGGGATTTGAAGTCTACACATCAGATAGAGGGGGA CAAGTCACATGGCACGGGCCTGGGCAAGTAGTCATGTACCCCATCATTGA TCTCACCCACCACAAGAGGGATTTAAGGTGGTATGTTCGTGGCATGGAAG AAGTAGTACTACGAGTGCTGGCCTCCCATGGAGTCACCGGACAAAGGGAC GAGAAACACACGGGTGTGTGGGTAGAGGAGAAGGGAGGGAAAGGGAGGGA GGAAGGAGGAGGGGGGCTGATAAAGGTGGCGGCGATTGGGGTGTCTGCGA GTAGATGGATTACTTGCCACGGGTTGGCGCTGAATGTGAACCCGGACCTG AAGGCGTTTGATGCGATAGTTCCCTGTGGAGTAAAGGATCGACGGGTTGG GTGCCTTAAGGATTTCTTGTCTGCTGAAAAGGCGGCCAAATTGACCACTG CTCAAGTCCGCTACGAGCTGATGGAGGCATTCGAGGAGGTGTTCACGTCA ATGGAATTGTGTGTACAGGAGAAAAAGGGGCCAATGCTATGGCAGGTGGA GGAGGTGGTGCTTGTGGACGAAGAGGATCGGGAGGAATGTATGTGA back to top
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