NO06G00470.5, NO06G00470.5 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G00470.5
Unique NameNO06G00470.5
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1780
Alignment locationchr6:198499..200392 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:198499..200392 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO06G00470.5 vs.
Match: XP_005852506.1 (lipoyl(octanoyl) transferase [Nannochloropsis gaditana CCMP526]; EKU23325.1 lipoyl(octanoyl) transferase [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 335.1 bits (858), Expect = 1.700e-88
Identity = 165/225 (73.33%), Postives = 191/225 (84.89%), Query Frame = 0
Query:    1 MLVLEHTPVYTMGRSAKPEDLKFPREEMEEEKKGGKKGRGFEVYTSDRGGQVTWHGPGQVVMYPIIDLTHHKRDLRWYVRGMEEVVLRVLASHGVTGQRDEKHTGVWVEEKGGKGREEGGGGLIKVAAIGVSASRWITCHGLALNVNPDLKAFDAIVPCGVKDRRVGCLKDFLSAEKAAKLTTAQVRYELMEAFEEVFTSMELCVQEKKGPMLWQVEEVVLVDEE 226
            MLVLEH+PVYT+GRSAKP D+KFP  E       G+ GRGFEV+ +DRGGQVTWHGPGQ+V+YP++DLTHHK+DLRWYVRG+EEVVLRVLA HGV GQRDEKHTGVWV+E+G +G E     L KVAAIGVSASRW+TCHGLALNV+PDL+AF++IVPCGV+DRRVGCLK  LS   AA+LTTAQVRYELMEAFE+VF SMELCVQEKK  +   V+E+VL DEE
Sbjct:   57 MLVLEHSPVYTLGRSAKPGDVKFPLVEGT-----GQGGRGFEVFKTDRGGQVTWHGPGQIVIYPVVDLTHHKKDLRWYVRGLEEVVLRVLALHGVEGQRDEKHTGVWVKEQGPEGEE-----LTKVAAIGVSASRWVTCHGLALNVDPDLRAFESIVPCGVRDRRVGCLKTLLSPHVAAELTTAQVRYELMEAFEDVFPSMELCVQEKKDQLKGTVDEMVLEDEE 271          
The following BLAST results are available for this feature:
BLAST of NO06G00470.5 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005852506.11.700e-8873.33lipoyl(octanoyl) transferase [Nannochloropsis gadi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G00470NO06G00470Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G00470.5NO06G00470.5-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G00470.5.cds1NO06G00470.5.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G00470.5.cds2NO06G00470.5.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G00470.5 ID=NO06G00470.5|Name=NO06G00470.5|organism=Nannochloropsis oceanica|type=mRNA|length=1780bp
AAAACGCGGCATGCTTGAGTCCTGGATGTGATTGTTTGTAGGTTGTAGAG
GGTTAGAAATGCCGGTTGCAGGGAAAGCTTCTAGGGGTGAGGGCGGGGTG
GGAAGGCTATGCAGACACGGCATTGAGAGCGTCTGTGACCCAAAAAGTGA
CACTTTCTTACGTTCAACAAGAGGAACTCATACTTTGTGAATCTGTCTGA
GTCTATCGCTGTCCCCCGGCACATGTCTGGGCCTGTCGGTGTCCACTCGA
AACACAAATGTGTGAGGATATTTGCGATGTTGCCTTCGTTGATGCTGGCG
ATATCGACCTCCTGCCTCTCGTATTTCACACAATTCCCCCAACCACCAAC
CACACTGCGCAGGCGGCAGCCACGAGCTAGCCATGACGGCAGCCGCACTA
GCAGCAGGTGCTATGCGGATGGGTTTGCGCCGGCGGGTGGCAACGCTCAA
CATCCAAGGTAAGTTGCAGCAGTCGATGACGAGACTTCTGTTTGGGATCG
ATGACACGTAACTCTTCTTCCCCACGCTTTTCTATCTCACGCATGCACAG
GTCTTGTCCCTTACGCCTCAGCCTGGCAGCTGCAGCGTGAGCTTGTCGCC
CAACGCATCGCCTGGCAAAAGGAGGAACGGTACGTGTCCTCTCTCTCCCC
CCTTTCCCTTTCCCTGTTTGTTCCCAATCACGACGTCACCCTCACCTTTC
CTCCCTCCCTCCCTTTCTTCCTTAAGAGCCGGGTACGACGCTATGCTAGT
GCTCGAGCACACGCCCGTCTATACCATGGGTCGATCTGCCAAGCCGGAGG
ACTTAAAATTCCCCCGGGAAGAGATGGAGGAAGAGAAGAAGGGAGGGAAG
AAGGGAAGGGGATTTGAAGTCTACACATCAGATAGAGGGGGACAAGTCAC
ATGGCACGGGCCTGGGCAAGTAGTCATGTACCCCATCATTGATCTCACCC
ACCACAAGAGGGATTTAAGGTGGTATGTTCGTGGCATGGAAGAAGTAGTA
CTACGAGTGCTGGCCTCCCATGGAGTCACCGGACAAAGGGACGAGAAACA
CACGGGTGTGTGGGTAGAGGAGAAGGGAGGGAAAGGGAGGGAGGAAGGAG
GAGGGGGGCTGATAAAGGTGGCGGCGATTGGGGTGTCTGCGAGTAGATGG
ATTACTTGCCACGGGTTGGCGCTGAATGTGAACCCGGACCTGAAGGCGTT
TGATGCGATAGTTCCCTGTGGAGTAAAGGATCGACGGGTTGGGTGCCTTA
AGGATTTCTTGTCTGCTGAAAAGGCGGCCAAATTGACCACTGCTCAAGTC
CGCTACGAGCTGATGGAGGCATTCGAGGAGGTGTTCACGTCAATGGAATT
GTGTGTACAGGAGAAAAAGGGGCCAATGCTATGGCAGGTGGAGGAGGTGG
TGCTTGTGGACGAAGAGGATCGGGAGGAATGTATGTGATAAGCGGTTCTC
TTGCGAGAAGAGGGAGCAGGAGAAGTACACGGATTTACCTCTTGATTCCT
TCCCTCCCTCCCTCGATGGATGTCTGTGTGTTGAAAGGGCAAGCTGTTGG
GAGGGAAACAGGGAGTGGTGTCGCGAGAGGTGGCGGGTACAAAGGAATGT
ATCCAGAGTGAGAAGAGACTGGGAGCGAATGTAATTAGTTACATATCGGA
TTACAAACTTGAAAGTTAGACAGGCGAAAACTGAAGTCGCGAGGGGATAT
GCATATGGAAGAGGCTGCAAAAAAAAGAAAAAGATCAATAAGCCAATACA
ACCACATAGTCGGACAAGGTAAAATAAACT
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protein sequence of NO06G00470.5

>NO06G00470.5-protein ID=NO06G00470.5-protein|Name=NO06G00470.5|organism=Nannochloropsis oceanica|type=polypeptide|length=232bp
MLVLEHTPVYTMGRSAKPEDLKFPREEMEEEKKGGKKGRGFEVYTSDRGG
QVTWHGPGQVVMYPIIDLTHHKRDLRWYVRGMEEVVLRVLASHGVTGQRD
EKHTGVWVEEKGGKGREEGGGGLIKVAAIGVSASRWITCHGLALNVNPDL
KAFDAIVPCGVKDRRVGCLKDFLSAEKAAKLTTAQVRYELMEAFEEVFTS
MELCVQEKKGPMLWQVEEVVLVDEEDREECM*
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mRNA from alignment at chr6:198499..200392-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G00470.5 ID=NO06G00470.5|Name=NO06G00470.5|organism=Nannochloropsis oceanica|type=mRNA|length=1894bp|location=Sequence derived from alignment at chr6:198499..200392- (Nannochloropsis oceanica)
AAAACGCGGCATGCTTGAGTCCTGGATGTGATTGTTTGTAGGTTGTAGAG GGTTAGAAATGCCGGTTGCAGGGAAAGCTTCTAGGGGTGAGGGCGGGGTG GGAAGGCTATGCAGACACGGCATTGAGAGCGTCTGTGACCCAAAAAGTGA CACTTTCTTACGTTCAACAAGAGGAACTCATACTTTGTGAATCTGTCTGA GTCTATCGCTGTCCCCCGGCACATGTCTGGGCCTGTCGGTGTCCACTCGA AACACAAATGTGTGAGGATATTTGCGATGTTGCCTTCGTTGATGCTGGCG ATATCGACCTCCTGCCTCTCGTATTTCACACAATTCCCCCAACCACCAAC CACACTGCGCAGGCGGCAGCCACGAGCTAGCCATGACGGCAGCCGCACTA GCAGCAGGTGCTATGCGGATGGGTTTGCGCCGGCGGGTGGCAACGCTCAA CATCCAAGGTAAGTTGCAGCAGTCGATGACGAGACTTCTGTTTGGGATCG ATGACACGTAACTCTTCTTCCCCACGCTTTTCTATCTCACGCATGCACAG GTCTTGTCCCTTACGCCTCAGCCTGGCAGCTGCAGCGTGAGCTTGTCGCC CAACGCATCGCCTGGCAAAAGGAGGAACGGTACGTGTCCTCTCTCTCCCC CCTTTCCCTTTCCCTGTTTGTTCCCAATCACGACGTCACCCTCACCTTTC CTCCCTCCCTCCCTTTCTTCCTTAAGAGCCGGGTACGACGCTATGCTAGT GCTCGAGCACACGCCCGTCTATACCATGGGTCGATCTGCCAAGCCGGAGG ACTTAAAATTCCCCCGGGAAGAGATGGAGGAAGAGAAGAAGGGAGGGAAG AAGGGAAGGGGATTTGAAGTCTACACATCAGATAGAGGGGGACAAGTCAC ATGGCACGGGCCTGGGCAAGTAGTCATGTACCCCATCATTGATCTCACCC ACCACAAGAGGGATTTAAGGTGGTATGTTCGTGGCATGGAAGAAGTAGTA CTACGAGTGCTGGCCTCCCATGGAGTCACCGGACAAAGGGACGAGAAACA CACGGGTGTGTGGGTAGAGGAGAAGGGAGGGAAAGGGAGGGAGGAAGGAG GAGGGGGGCTGATAAAGGTGGCGGCGATTGGGGTGTCTGCGAGTAGATGG ATTACTTGCCACGGGTTGGCGCTGAATGTGAACCCGGACCTGAAGGCGTT TGATGCGATAGTTCCCTGTGGAGTAAAGGATCGACGGGTTGGGTAAGTCT ACTTTCATATTATACTATTATACGTACTTGATTTATTTTTCATGAGTATC CTTTGACTTGTTCATTTATATACGTATTTATGCGTTTTATTCATTCACTC ATATAGGTGCCTTAAGGATTTCTTGTCTGCTGAAAAGGCGGCCAAATTGA CCACTGCTCAAGTCCGCTACGAGCTGATGGAGGCATTCGAGGAGGTGTTC ACGTCAATGGAATTGTGTGTACAGGAGAAAAAGGGGCCAATGCTATGGCA GGTGGAGGAGGTGGTGCTTGTGGACGAAGAGGATCGGGAGGAATGTATGT GATAAGCGGTTCTCTTGCGAGAAGAGGGAGCAGGAGAAGTACACGGATTT ACCTCTTGATTCCTTCCCTCCCTCCCTCGATGGATGTCTGTGTGTTGAAA GGGCAAGCTGTTGGGAGGGAAACAGGGAGTGGTGTCGCGAGAGGTGGCGG GTACAAAGGAATGTATCCAGAGTGAGAAGAGACTGGGAGCGAATGTAATT AGTTACATATCGGATTACAAACTTGAAAGTTAGACAGGCGAAAACTGAAG TCGCGAGGGGATATGCATATGGAAGAGGCTGCAAAAAAAAGAAAAAGATC AATAAGCCAATACAACCACATAGTCGGACAAGGTAAAATAAACT
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Coding sequence (CDS) from alignment at chr6:198499..200392-

>NO06G00470.5 ID=NO06G00470.5|Name=NO06G00470.5|organism=Nannochloropsis oceanica|type=CDS|length=696bp|location=Sequence derived from alignment at chr6:198499..200392- (Nannochloropsis oceanica)
ATGCTAGTGCTCGAGCACACGCCCGTCTATACCATGGGTCGATCTGCCAA
GCCGGAGGACTTAAAATTCCCCCGGGAAGAGATGGAGGAAGAGAAGAAGG
GAGGGAAGAAGGGAAGGGGATTTGAAGTCTACACATCAGATAGAGGGGGA
CAAGTCACATGGCACGGGCCTGGGCAAGTAGTCATGTACCCCATCATTGA
TCTCACCCACCACAAGAGGGATTTAAGGTGGTATGTTCGTGGCATGGAAG
AAGTAGTACTACGAGTGCTGGCCTCCCATGGAGTCACCGGACAAAGGGAC
GAGAAACACACGGGTGTGTGGGTAGAGGAGAAGGGAGGGAAAGGGAGGGA
GGAAGGAGGAGGGGGGCTGATAAAGGTGGCGGCGATTGGGGTGTCTGCGA
GTAGATGGATTACTTGCCACGGGTTGGCGCTGAATGTGAACCCGGACCTG
AAGGCGTTTGATGCGATAGTTCCCTGTGGAGTAAAGGATCGACGGGTTGG
GTGCCTTAAGGATTTCTTGTCTGCTGAAAAGGCGGCCAAATTGACCACTG
CTCAAGTCCGCTACGAGCTGATGGAGGCATTCGAGGAGGTGTTCACGTCA
ATGGAATTGTGTGTACAGGAGAAAAAGGGGCCAATGCTATGGCAGGTGGA
GGAGGTGGTGCTTGTGGACGAAGAGGATCGGGAGGAATGTATGTGA
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Synonyms
Publications