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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr6 | genome | chr6:194999..198498 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO06G00460.2 vs.
Match: EWM26101.1 (hypothetical protein Naga_100014g81 [Nannochloropsis gaditana]) HSP 1 Score: 730.3 bits (1884), Expect = 4.100e-207 Identity = 345/510 (67.65%), Postives = 425/510 (83.33%), Query Frame = 0
Query: 9 VLLLAVLAASGRSSSTSTSSTNHP-HNRPDEAFQCDVNKETRATIAFKALERLKMNDFSLVKTGIFAGHGPTSGEQVAGNPNTLYMIAGFNDTEHLLTPADYPSSSWPVPPD-DNGPVPPSGPLSEEMMGVSMDRNEAIVLFFCTPPPMEYFGLTAYVTNRVLFNETERGKGDSSLIVHMPMAEIANPLNYLRLNTTKASAFPSREDDPTPFYSSLSLAVFSPSRAVFETVAEAFIQAGLEEGAVNYYPMSGQTLRLHDRSKPFEYDYPDRFLVLCRVSYFQDQAAGEAWSARPWPAFFVRAPDLPVYQKSVPEPRILSDVSGDSEKVYLPTIEKLMSAIVANKTSTGQARLLVQQQIVSVPNDRGARDQCLNNNSFVAAVDPIMTGRGGCGYGTTDCRYGTSAALDQPFELDHFFVVVGVQHEHLGHSSYSSIMLTSAKGYEERNHTITIRESDGRGAPSLYLSPEEDPDIEKLYAVTFARTCRKDDRYCKEFNQGQFSRGDIVYWMER 517
++ L V + G++ + P R EAFQCDV++E+RATIA KALE LKMNDF++VK GIFAGH P++GEQV GNPNTLYM+A FNDT+ LLTP DYP + WP P DNGP PP GP+S+++MGVS+ R EAIVL FCTPPP +YFGLT+YVTNRVLFN+T G+GD+SL+VHMP+AEI+NPLNYL +NTTK +A +R+ DP+ F++SLSLAVFSPSR V++T+ EAF+QAGL E A N+YP+S QT+RLHDRSKPFE++YPDR VLCRVSYF+D+AA +AW++ PWPAFF++APDLP YQ+SVPE R+LSD+SG+SE+ YLPTI L++AI+ANKT++G ARLL Q+QIV+VPNDRG R+QCLNNNSF+AAVDP+M GGCG+GTTDCRYGTSAALDQPF LD FF+VVGVQHE LGHSSYSSIMLTS GYEE NHTITIRE+DGR AP+LYLS + PD+ LY+VTFARTC +D+R+CKEF++ QF DI+YWMER
Sbjct: 8 LVFLLVATSLGQAFGNANVEQEEPLPRRSGEAFQCDVDRESRATIALKALEILKMNDFTVVKPGIFAGHRPSNGEQVGGNPNTLYMLAAFNDTDRLLTPPDYPPAEWPFDPSSDNGPSPPPGPVSDQLMGVSIQRGEAIVLLFCTPPPAKYFGLTSYVTNRVLFNDTGGGRGDASLVVHMPLAEISNPLNYLVMNTTKGTATAARKVDPSSFFNSLSLAVFSPSREVYQTITEAFVQAGLAERASNFYPLSAQTIRLHDRSKPFEWNYPDRLSVLCRVSYFEDKAAADAWASHPWPAFFIKAPDLPHYQRSVPEQRLLSDISGESEQTYLPTIHSLLAAIIANKTASGHARLLRQEQIVAVPNDRGTRNQCLNNNSFIAAVDPLMMA-GGCGFGTTDCRYGTSAALDQPFGLDKFFIVVGVQHERLGHSSYSSIMLTSQLGYEEINHTITIRETDGREAPALYLSEHDYPDLNVLYSVTFARTCPQDERFCKEFSEAQFRGEDIIYWMER 516
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO06G00460.2 ID=NO06G00460.2|Name=NO06G00460.2|organism=Nannochloropsis oceanica|type=mRNA|length=2388bp
CCTGTGTTCTTGTAAAGAGCTCCTGCTAGTCAATCGTTCTCCTTGCTGAC
CCAGGTCGGTATGTTGCATCTCCTTGAAGCCACTTTCTCTTCGTTCCCCA
TAGTTTTGCCAACCATCATTCAAGCTAGCCCTCTTGTGCGTGGTCTAAAG
CTTGTCGCTGTCCAGTGGCACCAGCTGGATGCCTGCTGAATATCAAATTA
TATGCATGGTGCCACCGGCTTGTCGTCGAGGTCAATGCGAAGCTTTGTCG
CCCACATCGGTATGTCCCACCAGCCACCATACCATATTCAAAACCCACAA
CGTACACATGGACACAGGCTTACGTTCGGTGCCGGCACGAAAACCGGTAT
AAAATGTACTTCGCCAGTGTGCTTCCTGTCCTGCTCCTTGCTGTCCTTGC
TGCCTCCGGGAGGAGCAGCAGCACCAGCACCAGCAGCACCAACCACCCTC
ACAATCGTCCAGACGAGGCGTTTCAATGCGACGTCAATAAGGAGACCCGC
GCAACCATTGCATTCAAGGCCTTGGAGCGGCTAAAGATGAACGACTTCTC
GCTGGTGAAGACGGGTATCTTCGCAGGGCATGGACCCACATCCGGAGAGC
AGGTCGCAGGGAATCCCAATACCCTTTACATGATCGCAGGTTTCAACGAC
ACCGAACACCTCCTCACCCCCGCCGACTACCCCTCCTCCTCATGGCCTGT
CCCCCCCGACGACAACGGCCCTGTCCCCCCCTCGGGCCCGCTGAGTGAGG
AGATGATGGGCGTCAGCATGGATCGGAACGAGGCCATTGTCCTCTTCTTC
TGCACGCCCCCGCCCATGGAGTATTTTGGCTTGACAGCGTATGTCACCAA
TCGAGTGCTCTTCAATGAGACGGAACGAGGCAAGGGAGACAGCAGTCTCA
TCGTGCATATGCCCATGGCGGAGATCGCCAACCCCCTCAACTATCTACGC
CTCAACACGACCAAGGCCTCCGCTTTCCCTTCCCGCGAAGATGATCCGAC
CCCCTTCTACTCCTCCCTGTCCCTCGCCGTCTTTTCGCCCTCCCGCGCAG
TGTTTGAGACGGTTGCAGAGGCCTTCATCCAGGCCGGGTTGGAGGAAGGG
GCAGTGAACTACTACCCTATGTCGGGACAGACCCTCCGACTGCATGATCG
CTCCAAGCCCTTCGAGTACGACTATCCTGACAGGTTTCTCGTCTTGTGCC
GAGTCAGCTATTTCCAGGATCAGGCGGCGGGGGAAGCGTGGTCAGCCCGC
CCTTGGCCGGCCTTCTTCGTCCGAGCCCCCGACCTGCCCGTCTATCAGAA
GAGTGTGCCCGAACCAAGGATCCTCAGTGACGTGAGCGGGGACAGCGAGA
AGGTCTACCTCCCCACTATTGAGAAGTTAATGTCAGCCATCGTGGCCAAC
AAGACTTCGACAGGCCAGGCCCGGCTGCTAGTACAGCAACAAATCGTCTC
AGTTCCCAACGATAGAGGGGCCCGGGATCAGTGTCTCAATAACAACTCTT
TTGTCGCGGCCGTGGACCCGATCATGACTGGCCGCGGTGGGTGTGGGTAC
GGCACGACGGACTGTCGATATGGCACCAGTGCTGCCCTGGACCAGCCCTT
CGAGCTCGATCACTTCTTCGTCGTCGTCGGCGTGCAACACGAGCACCTGG
GTCACTCCTCCTACTCCTCCATCATGCTTACCTCCGCCAAGGGCTACGAG
GAACGCAATCACACCATCACCATCCGTGAGAGCGACGGCCGCGGAGCCCC
CTCTCTATATCTCTCCCCCGAGGAAGATCCGGACATTGAGAAATTATATG
CAGTTACATTTGCAAGGACCTGTCGGAAGGATGATAGATATTGTAAGGAG
TTCAATCAAGGACAATTTTCAAGGGGCGATATCGTGTACTGGATGGAGCG
GTAGGTGGCCGGAGGGAGGAAGGGGAGGGAGGGGAGGAGAATGGGAAACG
GGGGGGATACATAGTTTGTAGTTACGTGTAATCTGAGCATGCTATAGCCG
TTTCTTTTAGGGAAATCTGCTGCAGAATAGCCTCAATGGTGGAAGGACAA
GGACATTGGCGCTGTTTCCAACTCTAACCTTCCCTTCTTTCTTCCGTCCC
CTCCACAGTGCTTACCTTCAACGTTCGACCGGTGTGGCCCCCAATATAGA
GGAGTATGTCCAAAGTTTTGTATTGACCTTCCAAGGCTCATTAGTGTGAG
AGACTATGGTCATGAAGTTGAAAGAAAGCGGAGCCTTGAACTGATTTTCG
GGGGAGGGAGTAGAGGAGGATGAGGGAGGCAGAGGGTAGAAAATTGTAGT
TCTTGTACAAGTGGTCAAGGCGACACAAAAGTGGTGCAGGATAACGTATG
TCATACCGTACAAAAGCAAACAATGATAATAAAAGGGA back to topprotein sequence of NO06G00460.2 >NO06G00460.2-protein ID=NO06G00460.2-protein|Name=NO06G00460.2|organism=Nannochloropsis oceanica|type=polypeptide|length=517bp
MYFASVLPVLLLAVLAASGRSSSTSTSSTNHPHNRPDEAFQCDVNKETRA
TIAFKALERLKMNDFSLVKTGIFAGHGPTSGEQVAGNPNTLYMIAGFNDT
EHLLTPADYPSSSWPVPPDDNGPVPPSGPLSEEMMGVSMDRNEAIVLFFC
TPPPMEYFGLTAYVTNRVLFNETERGKGDSSLIVHMPMAEIANPLNYLRL
NTTKASAFPSREDDPTPFYSSLSLAVFSPSRAVFETVAEAFIQAGLEEGA
VNYYPMSGQTLRLHDRSKPFEYDYPDRFLVLCRVSYFQDQAAGEAWSARP
WPAFFVRAPDLPVYQKSVPEPRILSDVSGDSEKVYLPTIEKLMSAIVANK
TSTGQARLLVQQQIVSVPNDRGARDQCLNNNSFVAAVDPIMTGRGGCGYG
TTDCRYGTSAALDQPFELDHFFVVVGVQHEHLGHSSYSSIMLTSAKGYEE
RNHTITIRESDGRGAPSLYLSPEEDPDIEKLYAVTFARTCRKDDRYCKEF
NQGQFSRGDIVYWMER* back to topmRNA from alignment at chr6:194999..198498- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO06G00460.2 ID=NO06G00460.2|Name=NO06G00460.2|organism=Nannochloropsis oceanica|type=mRNA|length=3500bp|location=Sequence derived from alignment at chr6:194999..198498- (Nannochloropsis oceanica)
CCTGTGTTCTTGTAAAGAGCTCCTGCTAGTCAATCGTTCTCCTTGCTGAC
CCAGGTCGGTATGTTGCATCTCCTTGAAGCCACTTTCTCTTCGTTCCCCA
TAGTTTTGCCAACCATCATTCAAGCTAGCCCTCTTGTGCGTGGTCTAAAG
CTTGTCGCTGTCCAGTGGCACCAGCTGGATGCCTGCTGAATATCAAATTA
TATGCATGGTGCCACCGGCTTGTCGTCGAGGTCAATGCGAAGCTTTGTCG
CCCACATCGGTATGTCCCACCAGCCACCATACCATATTCAAAACCCACAA
CGTACACATGGACACAGGCTTACGTTCGGTGCCGGCACGAAAACCGGTAT
AAAATGTACTTCGCCAGTGTGCTTCCTGTCCTGCTCCTTGCTGTCCTTGC
TGCCTCCGGGAGGAGCAGCAGCACCAGCACCAGCAGCACCAACCACCCTC
ACAATCGTCCAGACGAGGCGTTTCAATGCGACGTCAATAAGGAGACCCGC
GCAACCATTGCATTCAAGGCCTTGGAGCGGCTAAAGATGAACGACTTCTC
GCTGGTGAAGACGGGTATCTTCGCAGGGCATGTACGTATTGTATTTGTTT
GGTTTGATGGGTAGGTGAATCGAAATGGGGGTGTATGACCCACGTTTTGG
AACTCCTCACGCTTGTTATACGTGACTTACCTGTGCACCGCAGTGGCACC
ATGACAATTGAAAAGACAGAGAGAATGATTGGAGCTGCCCGCTCCTGTGA
CTCCAGCAAGGCGCGCTTGTCTTGACTCTCTCTTATCTCCCCTTCACTCT
CCCTCCCTCCCCTTTCTGCCCTTCCCTCCTGCAGGGACCCACATCCGGAG
AGCAGGTCGCAGGGAATCCCAATACCCTTTACATGATCGCAGGTAAGCGT
CTGAAGAGCCAATACACGATTGTTAACTTCCTCTTCCTCTCAGGGGTGAT
ACTCCTCTCTCTCTTTTGTCCCTCTCAAAACCAAATCGAAGCAGAACATG
AATCAGTAAACCACCATTCTGTCTCGCAGGTTTCAACGACACCGAACACC
TCCTCACCCCCGCCGACTACCCCTCCTCCTCATGGCCTGTCCCCCCCGAC
GACAACGGCCCTGTCCCCCCCTCGGGCCCGCTGAGTGAGGAGATGATGGG
CGTCAGCATGGATCGGAACGAGGCCATTGTCCTCTTCTTCTGCACGCCCC
CGCCCATGGAGTATTTTGGCTTGACAGCGTATGTCACCAATCGAGTGCTC
TTCAATGAGACGGAACGAGGCAAGGGAGACAGCAGTCTCATCGTGCATAT
GCCCATGGCGGAGGTGAGAGACTCAAAAAATCTTCTCAATCTCTTTGATA
CAATTAATTTGATATATTTATTTTATGCTCTATCCAGGATCTAGATCGTG
CTCCCTCTATCGATTCTTACGCTACTCCATCTCAATTCCAGATCGCCAAC
CCCCTCAACTATCTACGCCTCAACACGACCAAGGCCTCCGCTTTCCCTTC
CCGCGAAGATGATCCGACCCCCTTCTACTCCTCCCTGTCCCTCGCCGTCT
TTTCGCCCTCCCGCGCAGTGTTTGAGACGGTTGCAGAGGCCTTCATCCAG
GCCGGGTTGGAGGAAGGGGCAGTGAACTACTACCCTATGTCGGGACAGAC
CCTCCGACTGCATGATCGCTCCAAGCCCTTCGAGTACGACTATCCTGACA
GGTTTCTCGTCTTGTGCCGAGTCAGCTATTTCCAGGATCAGGGTAAGTTG
TGTCGGATGGATGGATTTATGGGTTTGGTTGAGTCTTGGGCGTGTTTCTT
CGTTCCACTTATTTGTGGTTCATTTCTTCTCATCTTGACGTATGCCATTT
CGCGCGCTTTTCTCAGCGGCGGGGGAAGCGTGGTCAGCCCGCCCTTGGCC
GGCCTTCTTCGTCCGAGCCCCCGACCTGCCCGTCTATCAGAAGAGTGTGC
CCGAACCAAGGATCCTCAGTGACGTGAGCGGGGACAGCGAGAAGGTAGGA
GAGAGAGAAAGCTTGGGAGGGATGGACGGACGGACGGAGGAAGGGCTAGA
TAAATGCTCATGTCCGCGACCGCGACGAAAATCTTTACATGAACACAAAA
CCCGTAATTGGCTGTAACAGCAACAATATTCTCTGTCCCTTCCTTCTTTG
TATTTATTCGCGCCTCCCTCAGGTCTACCTCCCCACTATTGAGAAGTTAA
TGTCAGCCATCGTGGCCAACAAGACTTCGACAGGCCAGGCCCGGCTGCTA
GTACAGCAACAAATCGTCTCAGTTCCCAACGATAGAGGGGCCCGGGATCA
GTGTCTCAATAACAACTCTTTTGTCGCGGCCGTGGACCCGATCATGACTG
GCCGCGGTGGGTGTGGGTACGGCACGACGGACTGTCGGTACGTGCTGGGG
CCTTTGTGTTTCTCTCTTTCTTTTTTTCTATCTTTCTTTTCTCTCTCTCT
CTCTCTCTATATATATATATATATAAATAAATATATATATATATAAATAT
ATATATATATATATACACCTATCTCTATCTATCTCTATCTATCTCCATCT
ATCTATCTATATATATTCCCCTCTCCTTTCTCACCCCCTTCGTCGAGGCC
CCTTTGTACCTTATCTCGCTTGCTTTGTCTACTGCCTCTATCTCACACGT
AAACTGTCTTCCCCTTCGCGCTCCAACAGATATGGCACCAGTGCTGCCCT
GGACCAGCCCTTCGAGCTCGATCACTTCTTCGTCGTCGTCGGCGTGCAAC
ACGAGCACCTGGGTCACTCCTCCTACTCCTCCATCATGCTTACCTCCGCC
AAGGGCTACGAGGAACGCAATCACACCATCACCATCCGTGAGAGCGACGG
CCGCGGAGCCCCCTCTCTATATCTCTCCCCCGAGGAAGATCCGGACATTG
AGAAATTATATGCAGTTACATTTGCAAGGACCTGTCGGAAGGATGATAGA
TATTGTAAGGAGTTCAATCAAGGACAATTTTCAAGGGGCGATATCGTGTA
CTGGATGGAGCGGTAGGTGGCCGGAGGGAGGAAGGGGAGGGAGGGGAGGA
GAATGGGAAACGGGGGGGATACATAGTTTGTAGTTACGTGTAATCTGAGC
ATGCTATAGCCGTTTCTTTTAGGGAAATCTGCTGCAGAATAGCCTCAATG
GTGGAAGGACAAGGACATTGGCGCTGTTTCCAACTCTAACCTTCCCTTCT
TTCTTCCGTCCCCTCCACAGTGCTTACCTTCAACGTTCGACCGGTGTGGC
CCCCAATATAGAGGAGTATGTCCAAAGTTTTGTATTGACCTTCCAAGGCT
CATTAGTGTGAGAGACTATGGTCATGAAGTTGAAAGAAAGCGGAGCCTTG
AACTGATTTTCGGGGGAGGGAGTAGAGGAGGATGAGGGAGGCAGAGGGTA
GAAAATTGTAGTTCTTGTACAAGTGGTCAAGGCGACACAAAAGTGGTGCA
GGATAACGTATGTCATACCGTACAAAAGCAAACAATGATAATAAAAGGGA
back to topCoding sequence (CDS) from alignment at chr6:194999..198498- >NO06G00460.2 ID=NO06G00460.2|Name=NO06G00460.2|organism=Nannochloropsis oceanica|type=CDS|length=1551bp|location=Sequence derived from alignment at chr6:194999..198498- (Nannochloropsis oceanica)
ATGTACTTCGCCAGTGTGCTTCCTGTCCTGCTCCTTGCTGTCCTTGCTGC
CTCCGGGAGGAGCAGCAGCACCAGCACCAGCAGCACCAACCACCCTCACA
ATCGTCCAGACGAGGCGTTTCAATGCGACGTCAATAAGGAGACCCGCGCA
ACCATTGCATTCAAGGCCTTGGAGCGGCTAAAGATGAACGACTTCTCGCT
GGTGAAGACGGGTATCTTCGCAGGGCATGGACCCACATCCGGAGAGCAGG
TCGCAGGGAATCCCAATACCCTTTACATGATCGCAGGTTTCAACGACACC
GAACACCTCCTCACCCCCGCCGACTACCCCTCCTCCTCATGGCCTGTCCC
CCCCGACGACAACGGCCCTGTCCCCCCCTCGGGCCCGCTGAGTGAGGAGA
TGATGGGCGTCAGCATGGATCGGAACGAGGCCATTGTCCTCTTCTTCTGC
ACGCCCCCGCCCATGGAGTATTTTGGCTTGACAGCGTATGTCACCAATCG
AGTGCTCTTCAATGAGACGGAACGAGGCAAGGGAGACAGCAGTCTCATCG
TGCATATGCCCATGGCGGAGATCGCCAACCCCCTCAACTATCTACGCCTC
AACACGACCAAGGCCTCCGCTTTCCCTTCCCGCGAAGATGATCCGACCCC
CTTCTACTCCTCCCTGTCCCTCGCCGTCTTTTCGCCCTCCCGCGCAGTGT
TTGAGACGGTTGCAGAGGCCTTCATCCAGGCCGGGTTGGAGGAAGGGGCA
GTGAACTACTACCCTATGTCGGGACAGACCCTCCGACTGCATGATCGCTC
CAAGCCCTTCGAGTACGACTATCCTGACAGGTTTCTCGTCTTGTGCCGAG
TCAGCTATTTCCAGGATCAGGCGGCGGGGGAAGCGTGGTCAGCCCGCCCT
TGGCCGGCCTTCTTCGTCCGAGCCCCCGACCTGCCCGTCTATCAGAAGAG
TGTGCCCGAACCAAGGATCCTCAGTGACGTGAGCGGGGACAGCGAGAAGG
TCTACCTCCCCACTATTGAGAAGTTAATGTCAGCCATCGTGGCCAACAAG
ACTTCGACAGGCCAGGCCCGGCTGCTAGTACAGCAACAAATCGTCTCAGT
TCCCAACGATAGAGGGGCCCGGGATCAGTGTCTCAATAACAACTCTTTTG
TCGCGGCCGTGGACCCGATCATGACTGGCCGCGGTGGGTGTGGGTACGGC
ACGACGGACTGTCGATATGGCACCAGTGCTGCCCTGGACCAGCCCTTCGA
GCTCGATCACTTCTTCGTCGTCGTCGGCGTGCAACACGAGCACCTGGGTC
ACTCCTCCTACTCCTCCATCATGCTTACCTCCGCCAAGGGCTACGAGGAA
CGCAATCACACCATCACCATCCGTGAGAGCGACGGCCGCGGAGCCCCCTC
TCTATATCTCTCCCCCGAGGAAGATCCGGACATTGAGAAATTATATGCAG
TTACATTTGCAAGGACCTGTCGGAAGGATGATAGATATTGTAAGGAGTTC
AATCAAGGACAATTTTCAAGGGGCGATATCGTGTACTGGATGGAGCGGTA
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