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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr6 | genome | chr6:165472..169907 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO06G00400.3 vs.
Match: EWM26072.1 (hypothetical protein Naga_100278g4 [Nannochloropsis gaditana]) HSP 1 Score: 621.3 bits (1601), Expect = 2.200e-174 Identity = 312/408 (76.47%), Postives = 353/408 (86.52%), Query Frame = 0
Query: 14 SPPPSGAGGTSTSSSNHVHHAQGNHHLQGHSEKKSSSRQSREEQRLARRLFQIQDRSLTVLRVLFVIGIPLTIINISFACAYAWLFANQYAYTKDDWQRCLIYPNQGVDVFGNHAEDKTNYLMAAASYAGRVFVFIIVVFKMAYVGVKDTDILPYALFTNMMALLGIIVYREAEPIQPQPQQLSATLLTLIKYIHPHMYDFPDATAKWAPSSCAPAYHLNKWFLIFQIMVVVLVASIFVVVATCAVANYKEGKRWRFQLQGNAYPLGLLVVAFAGYVTCFYAKETVAQLTLDVLSDSNMDNFFVFSKGELDIVSLTMMMTLGAIGVGTCKGDLEKFKLGAFISYIHVVLSYPSILATFHGFNGVTYPFNKDKSLATSFDIWSMDSATGCPAYISTRSSIFARDQGVGK 422
SPPPSGAG ++SSS + S KKSSS+Q++E+QRLARR FQIQDRSLT LR+LFV+GIPLTIINISFAC YAW+FANQY+YTKDDWQRCL+YPNQ VD G DKTNYLMAAASYAGRVFVFIIVVFKMAYVGVKDTDILPY+LF N+MA+LGIIVYREAEPIQPQPQQLSATLLTL+KYI P+MY FP A AKWAP+SC+ AY LNKWFLIFQI+VVVL+ SIF+V++TCAVANY+ GKRWRFQL+ N YPLGLLV+AF GYVTCFYAKETVAQLTLDVL++S +++ F FSKGELDIVSLTMMMTLGAIGVGTCKGDLEKFKLGAFISYIHVVLSYPS+LAT H +N VTYP+NKDKSLA +F IWS+D A GCPAY++ +S+IF R V K
Sbjct: 15 SPPPSGAGDANSSSSKR----------RIESGKKSSSKQTKEDQRLARRYFQIQDRSLTALRILFVVGIPLTIINISFACVYAWIFANQYSYTKDDWQRCLVYPNQAVDPLGGSTADKTNYLMAAASYAGRVFVFIIVVFKMAYVGVKDTDILPYSLFANVMAILGIIVYREAEPIQPQPQQLSATLLTLVKYIQPNMYSFP-AAAKWAPASCSLAYALNKWFLIFQILVVVLMCSIFLVISTCAVANYRIGKRWRFQLEANGYPLGLLVIAFVGYVTCFYAKETVAQLTLDVLNESKLNSIFAFSKGELDIVSLTMMMTLGAIGVGTCKGDLEKFKLGAFISYIHVVLSYPSVLATIHAYNSVTYPYNKDKSLAQAFSIWSLDPAYGCPAYVTAKSAIFERFPKVSK 411
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO06G00400.3 ID=NO06G00400.3|Name=NO06G00400.3|organism=Nannochloropsis oceanica|type=mRNA|length=2646bp GCGGGGGAAGCAATCAAGGGCAGGATAAGACCACAAAACACCGCAAAATT GGCAACATGAGAAACAGATATCCTGATGTAATTATATTGTGTCTTCATGT CCTGCCCCTGCTCGTTTTACGGGAAGGAGGAGGTTTGCCGTGACAGGCCG CTCCAACCCTGAAATAAGAACAAGCTCGACGACTGCAGACAGTCGCATTT ACGAGAAACAAATCGAGTATGTCAATTTTGTCACAGATAGAGGTTAACAC CGTACGACTAGACGCAACAGGTAAAATGCAACTCCTTTTGATGATCCGTT GAGGACGCAGCAACGGCGACGTGCTCGGGATTCATTCATGGCCCGCCAAC GGACACAAGCCCAAAAACAGCGTTCTCGTCTTGCTCACAAACAGGCTACA CAGGGACACAGACACGCGGCGAATACCGTAAATCAAAATTCGATGATAAA AATGCGAAATGCCATGCCACTACCTCAATGCCACCTCAGTTTGAGTGAGA GCCTTTGCATTTCTCCCCAATCAAACGGGGGCGCACCCCCTGCTTTTGAA TGCCTCAATCGTTCCACACCACAACATCCACCATGATCCTGATTATCCAA ATCAAACCACGTGACCATCGACATTCACATAGACATACAAGATTCCGCGG CTAGTCCATGCCGCTCCCCACCACTAGCAGTGCTGGTGGCATGGGCAGTC CACCGCCTTCGGGCGCAGGTGGCACCTCCACTTCGTCCTCCAACCATGTC CATCACGCCCAAGGCAACCACCATTTACAAGGACACAGCGAGAAGAAGAG CAGTAGTCGGCAAAGCAGGGAAGAGCAGCGCCTGGCTCGACGCCTTTTTC AGATCCAGGACCGGTCCCTCACGGTTCTGCGCGTCCTCTTCGTGATAGGG ATCCCCCTTACCATCATTAATATCTCATTCGCGTGTGCCTATGCCTGGCT ATTTGCAAATCAATATGCGTACACCAAGGACGACTGGCAGCGGTGTCTCA TCTATCCCAACCAGGGAGTAGACGTCTTTGGAAACCACGCCGAGGACAAA ACGAATTACTTGATGGCTGCTGCGTCCTACGCTGGGCGTGTCTTTGTCTT TATCATCGTCGTCTTCAAAATGGCTTACGTCGGTGTCAAGGATACGGACA TCCTCCCCTACGCTCTCTTCACCAACATGATGGCCTTGCTTGGGATTATC GTGTACAGGGAGGCGGAGCCCATCCAGCCCCAGCCCCAGCAACTGTCTGC CACGCTCCTCACCCTCATCAAGTACATCCACCCGCACATGTACGACTTCC CCGACGCCACGGCCAAGTGGGCCCCCTCCTCCTGCGCGCCTGCCTATCAT TTGAACAAATGGTTCCTCATATTTCAAATCATGGTGGTCGTCCTGGTGGC GTCCATCTTCGTCGTTGTGGCCACGTGCGCCGTCGCCAATTACAAGGAAG GCAAGCGATGGCGGTTCCAGCTCCAAGGCAACGCCTACCCCCTGGGACTC CTCGTCGTGGCGTTTGCCGGGTATGTGACGTGCTTCTATGCCAAGGAAAC GGTGGCCCAGCTCACGCTCGATGTGCTCAGTGACTCCAACATGGATAACT TTTTCGTATTCAGCAAAGGAGAGCTGGACATCGTCTCTCTAACGATGATG ATGACTTTGGGGGCCATTGGGGTGGGGACATGCAAGGGTGACCTAGAAAA GTTTAAGCTCGGCGCCTTCATCTCGTACATCCACGTAGTTTTGTCCTACC CCTCCATCCTTGCCACCTTTCACGGCTTCAATGGCGTGACCTACCCCTTC AACAAGGACAAGTCGCTGGCCACGTCGTTCGACATCTGGTCGATGGACTC GGCGACCGGCTGCCCCGCCTACATCTCCACCAGATCCAGCATATTTGCGA GGGATCAAGGGGTGGGTAAATCAAATGCGCGGTGAATCCCTCCCTCCTTC TCTCCTCCCCCCTTCCCTCCCTTGCCACTTCCCTGCTTCCCTTTCTCCCT CCCTCCTTTACACCTTCTCTCTTGCCTCTTTAACCTCCTCTTCCCTCTTC CTTCCCTCCCTCCTTGCCTCCCCCCCTCCCTCCCTTCCTCGATTCTCACA GGCCGCCCACAAATTGTGTCGCATGTGCCACCTCTCCCTTGTCGGCCAGC TCATCCAATTTTGCGCGCAGCACCTCGTTGTGGTGGCTTGCCTTTACATC CTTTATGCCAATCGAGACCTGCCGGCGCAGAGACTCAGGCTGGGCACCTA CGTGCCCGACTACCTGGGAGGAGTACATGTGAACGTCTCGGTCCACAAGC CCATCGCTGGTTTCAGGCGCAATCATTCCCGCTTCGTGGTCGACGGCGGA AAGAAGGGAGGGAAAGGAGGAGCAGGGGCAGGATACTACGCCCGGCTGCC CGGTGGGCCAGAGGAGGAAGAGGAGGTGGGAGGGGGAGGGATGGAGGAAG GGAAAAAAGGAGGGGGGAGAGAGACGGTGGCCGCTGGGGTATGAGCGCGT GTGTGTGGAGTGCCTATGTAAAGGAGGGTGGCAGGCAGAGAGATGTGGTA GAATTGTGGCGGGAAATTCAATCAACCCTAAAGAAATACGAAAAAGGGTA AATTATGAAGCAGGGACCGGGAAAAGAAACAAATACATGTTGTGAA back to topprotein sequence of NO06G00400.3 >NO06G00400.3-protein ID=NO06G00400.3-protein|Name=NO06G00400.3|organism=Nannochloropsis oceanica|type=polypeptide|length=426bp MPLPTTSSAGGMGSPPPSGAGGTSTSSSNHVHHAQGNHHLQGHSEKKSSS RQSREEQRLARRLFQIQDRSLTVLRVLFVIGIPLTIINISFACAYAWLFA NQYAYTKDDWQRCLIYPNQGVDVFGNHAEDKTNYLMAAASYAGRVFVFII VVFKMAYVGVKDTDILPYALFTNMMALLGIIVYREAEPIQPQPQQLSATL LTLIKYIHPHMYDFPDATAKWAPSSCAPAYHLNKWFLIFQIMVVVLVASI FVVVATCAVANYKEGKRWRFQLQGNAYPLGLLVVAFAGYVTCFYAKETVA QLTLDVLSDSNMDNFFVFSKGELDIVSLTMMMTLGAIGVGTCKGDLEKFK LGAFISYIHVVLSYPSILATFHGFNGVTYPFNKDKSLATSFDIWSMDSAT GCPAYISTRSSIFARDQGVGKSNAR* back to topmRNA from alignment at chr6:165472..169907+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO06G00400.3 ID=NO06G00400.3|Name=NO06G00400.3|organism=Nannochloropsis oceanica|type=mRNA|length=4436bp|location=Sequence derived from alignment at chr6:165472..169907+ (Nannochloropsis oceanica) GCGGGGGAAGCAATCAAGGGCAGGATAAGACCACAAAACACCGCAAAATT
GGCAACATGAGAAACAGATATCCTGATGTAATTATATTGTGTCTTCATGT
CCTGCCCCTGCTCGTTTTACGGGAAGGAGGAGGTTTGCCGTGACAGGCCG
CTCCAACCCTGAAATAAGAACAAGCTCGACGACTGCAGACAGTCGCATTT
ACGAGAAACAAATCGAGTATGTCAATTTTGTCACAGATAGAGGTTAACAC
CGTACGACTAGACGCAACAGGTAAAATGCAACTCCTTTTGATGATCCGTT
GAGGACGCAGCAACGGCGACGTGCTCGGGATTCATTCATGGCCCGCCAAC
GGACACAAGCCCAAAAACAGCGTTCTCGTCTTGCTCACAAACAGGCTACA
CAGGGACACAGACACGCGGCGAATACCGTAAATCAAAATTCGATGATAAA
AATGCGAAATGCCATGCCACTACCTCAATGCCACCTCAGTTTGAGTGAGA
GCCTTTGCATTTCTCCCCAATCAAACGGGGGCGCACCCCCTGCTTTTGAA
TGCCTCAATCGTTCCACACCACAACATCCACCATGATCCTGATTATCCAA
ATCAAACCACGTGACCATCGACATTCACATAGACATACAAGATTCCGCGG
CTAGTCCATGCCGCTCCCCACCACTAGCAGTGCTGGTGGCATGGGCAGTC
CACCGCCTTCGGGCGCAGGTGGCACCTCCACTTCGTCCTCCAACCATGTC
CATCACGCCCAAGGCAACCACCATTTACAAGGACACAGCGAGAAGAAGAG
CAGTAGTCGGCAAAGCAGGGAAGAGCAGCGCCTGGCTCGACGCCTTTTTC
AGATCCAGGACCGGTACGTCGTGTTGATGAGTGCGTGTGTGTAGTGTGTA
TGTCTCGCCTTTTGAATGCAGCTGTGGGAGATGGAATGGGATTAAGACAG
GATAGGGACAGGCATCGCAAACCTCTCCTCGTGGAATTAATGAAAGGAGG
GCATAATGCAACGGCTCTCGTCATCGCTTTCCCGTCCTCGGGTCGACCAT
TCTCACCATCTTACTCCCCTTACCCCCCTTTGCCTCCCGCCTCGCTCCCC
CCCCAAGGTCCCTCACGGTTCTGCGCGTCCTCTTCGTGATAGGGATCCCC
CTTACCATCATTAATATCTCATTCGCGTGTGCCTATGCCTGGCTATTTGC
AAATCAATATGCGTACACCAAGGACGACTGGCAGCGGTGTCTCATCTATC
CCAACCAGGTAGGGAGTGAGGAAGGGAGGAAGGGAAGTGAGGGAGGAAAG
GCAGAAGAAGACGGATGGCGAGAACACGCATGGATTTACGGAGTATGTTT
CGCTTAATTTCTATGCACACCTCTTTTTGACCAGGGAGTAGACGTCTTTG
GAAACCACGCCGAGGACAAAACGAATTACTTGATGGCTGCTGGTGAGCCA
ATGGTTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
TCTCTCTCCCCCTCATCCCCTAACCGTCCTTGTAATAATCTCTCATCCCC
CCCCCAGCGTCCTACGCTGGGCGTGTCTTTGTCTTTATCATCGTCGTCTT
CAAAATGGCTTACGTCGGTGTCAAGGTGCGCGGATCCCTAACTCCCTCCC
TCCCTCCCTCCCTCCCTCCCACGTGCTTCGATACACCGCCTTGTCTCACT
CCCTCTATCTTCTGTCCCTCCCACCCTTCCTCCCACAGGATACGGACATC
CTCCCCTACGCTCTCTTCACCAACATGATGGCCTTGCTTGGGATTATCGT
GTACAGGGAGGCGGAGCCCATCCAGCCCCAGCCCCAGGTGAGGAAGGAAG
GGAGGGAGGGAGGGAGGGAGGGGCGGAGGGAAGAGGGGAGGAAAGGAATC
ATGTCAAGGGAGTGTTGATCCCATGGCACCGCTTTCTCCTATTTCCTGAA
CACCTCACTTCTTCGCCTTCCCTCCCTCCCTCCCTCCCTCCAGCAACTGT
CTGCCACGCTCCTCACCCTCATCAAGTACATCCACCCGCACATGTACGAC
TTCCCCGACGCCACGGCCAAGTGGGCCCCCTCCTCCTGCGCGCCTGCCTA
TCATTTGAACAAATGGTTCCTCATATTTCAAATCATGGTGGTCGTCCTGG
TGGTAAGGAGGGAGGGAGGGAGGGAGGGAGGGGAGTGGGGACTCGTAATT
CAAAATCAAAATCGATTTTTTCCGCCTTGCCATCTCATCCCTTCTTCTTC
CTGCCTAACCCCCCCTTCCCTCGCCCCCTCCCTCCTCCCAGGCGTCCATC
TTCGTCGTTGTGGCCACGTGCGCCGTCGCCAATTACAAGGAAGGCAAGCG
ATGGCGGTTCCAGCTCCAAGGTCTGTCCCTCCCTCCCTCCCTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCCCACCCTCCCTCCCTCCCTCCCTCCCTCTCTCCCTCCCTCCCTCTCT
CTCTCCCTCCCTCCCCTTCCCTTTACCCTTCATCGACTTTGCTCATCATT
CTCCCCTCCCGCCTTATCCTCCTCTCCCTCCCTCCCTCCCTCCCTTCCTC
CCTTCCTCCCTCCCTCCCTCCCTCCCTGCTGAAGGCAACGCCTACCCCCT
GGGACTCCTCGTCGTGGCGTTTGCCGGGTATGTGACGTGCTTCTATGCCA
AGGAAACGGTGGCCCAGCTCACGCTCGATGTGCTCAGTGTAAGGAGGAAG
GGAGGGAGGGAGTGAGGGAGGGAGTGCGGGAGTGAGTAAATTTGGCGGTT
CCTATACACGCGAAGACAGTGCATGGAACCAACCAATCAAGCTCACATGT
CTCTTCCCTCCACCTTCCCTCTCTCCCTCCCTCTTTCTCTGCTCAGGACT
CCAACATGGATAACTTTTTCGTATTCAGCAAAGGAGAGCTGGACATCGTC
TCTCTAACGATGATGATGACTTTGGGGGCCATTGGGGTGGGGACATGCAA
GGCACGTTCCTTCCTTCCCTCCCTCCCTCCCTCCCTCCCTCGTTTCCTCC
TTTCCCCCCATACGCGTGCCCCTCTCCCCATTATCCTCTCCTCATATCTC
CCCCTACCGCGACCGTGGAAAGCCCTCAACCTCAGTGCTCCTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCACCCTCTAGGGTGAC
CTAGAAAAGTTTAAGCTCGGCGCCTTCATCTCGTACATCCACGTAGTTTT
GTCCTACCCCTCCATCCTTGCCACCTTTCACGGCTTCAATGGCGTGACCT
ACCCCTTCAACAAGGTAGGGAGGGAGGGAGGGAAGGAAGAAGGAAACGAA
GCTGGTGCCAGCACGGAGCAGCACCCTCATCCCCCCCCCTCCCTCCCTTT
CTCGGCAGGACAAGTCGCTGGCCACGTCGTTCGACATCTGGTCGATGGAC
TCGGCGACCGGCTGCCCCGCCTACATCTCCACCAGATCCAGCATATTTGC
GAGGGATCAAGGGGTGGGTAAATCAAATGCGCGGTGAATCCCTCCCTCCT
TCTCTCCTCCCCCCTTCCCTCCCTTGCCACTTCCCTGCTTCCCTTTCTCC
CTCCCTCCTTTACACCTTCTCTCTTGCCTCTTTAACCTCCTCTTCCCTCT
TCCTTCCCTCCCTCCTTGCCTCCCCCCCTCCCTCCCTTCCTCGATTCTCA
CAGGCCGCCCACAAATTGTGTCGCATGTGCCACCTCTCCCTTGTCGGCCA
GCTCATCCAATTTTGCGCGCAGCACCTCGTTGTGGTGGCTTGCCTTTACA
TCCTTTATGCCAATCGAGACCTGCCGGCGCAGAGACTCAGGCTGGGCACC
TACGTGCCCGACTACCTGGGAGGTGAGGCAAGGGGAGGGAGGGAGGGAGG
GAGGGAGGGAAGGAGGGAGGAAAAGGAGGACATGCATGCTTGTTTCCGTC
TCGCAAAATATACTCAACCACCGTCCCTCTCTCCCTCCATTCCTCCCTCG
GTTCCTATAGGAGTACATGTGAACGTCTCGGTCCACAAGCCCATCGCTGG
TTTCAGGCGCAATCATTCCCGCTTCGTGGTCGACGGCGGAAAGAAGGGAG
GGAAAGGAGGAGCAGGGGCAGGATACTACGCCCGGCTGCCCGGTGGGCCA
GAGGAGGAAGAGGAGGTGGGAGGGGGAGGGATGGAGGAAGGGAAAAAAGG
AGGGGGGAGAGAGACGGTGGCCGCTGGGGTATGAGCGCGTGTGTGTGGAG
TGCCTATGTAAAGGAGGGTGGCAGGCAGAGAGATGTGGTAGAATTGTGGC
GGGAAATTCAATCAACCCTAAAGAAATACGAAAAAGGGTAAATTATGAAG
CAGGGACCGGGAAAAGAAACAAATACATGTTGTGAA back to topCoding sequence (CDS) from alignment at chr6:165472..169907+ >NO06G00400.3 ID=NO06G00400.3|Name=NO06G00400.3|organism=Nannochloropsis oceanica|type=CDS|length=1278bp|location=Sequence derived from alignment at chr6:165472..169907+ (Nannochloropsis oceanica) ATGCCGCTCCCCACCACTAGCAGTGCTGGTGGCATGGGCAGTCCACCGCC TTCGGGCGCAGGTGGCACCTCCACTTCGTCCTCCAACCATGTCCATCACG CCCAAGGCAACCACCATTTACAAGGACACAGCGAGAAGAAGAGCAGTAGT CGGCAAAGCAGGGAAGAGCAGCGCCTGGCTCGACGCCTTTTTCAGATCCA GGACCGGTCCCTCACGGTTCTGCGCGTCCTCTTCGTGATAGGGATCCCCC TTACCATCATTAATATCTCATTCGCGTGTGCCTATGCCTGGCTATTTGCA AATCAATATGCGTACACCAAGGACGACTGGCAGCGGTGTCTCATCTATCC CAACCAGGGAGTAGACGTCTTTGGAAACCACGCCGAGGACAAAACGAATT ACTTGATGGCTGCTGCGTCCTACGCTGGGCGTGTCTTTGTCTTTATCATC GTCGTCTTCAAAATGGCTTACGTCGGTGTCAAGGATACGGACATCCTCCC CTACGCTCTCTTCACCAACATGATGGCCTTGCTTGGGATTATCGTGTACA GGGAGGCGGAGCCCATCCAGCCCCAGCCCCAGCAACTGTCTGCCACGCTC CTCACCCTCATCAAGTACATCCACCCGCACATGTACGACTTCCCCGACGC CACGGCCAAGTGGGCCCCCTCCTCCTGCGCGCCTGCCTATCATTTGAACA AATGGTTCCTCATATTTCAAATCATGGTGGTCGTCCTGGTGGCGTCCATC TTCGTCGTTGTGGCCACGTGCGCCGTCGCCAATTACAAGGAAGGCAAGCG ATGGCGGTTCCAGCTCCAAGGCAACGCCTACCCCCTGGGACTCCTCGTCG TGGCGTTTGCCGGGTATGTGACGTGCTTCTATGCCAAGGAAACGGTGGCC CAGCTCACGCTCGATGTGCTCAGTGACTCCAACATGGATAACTTTTTCGT ATTCAGCAAAGGAGAGCTGGACATCGTCTCTCTAACGATGATGATGACTT TGGGGGCCATTGGGGTGGGGACATGCAAGGGTGACCTAGAAAAGTTTAAG CTCGGCGCCTTCATCTCGTACATCCACGTAGTTTTGTCCTACCCCTCCAT CCTTGCCACCTTTCACGGCTTCAATGGCGTGACCTACCCCTTCAACAAGG ACAAGTCGCTGGCCACGTCGTTCGACATCTGGTCGATGGACTCGGCGACC GGCTGCCCCGCCTACATCTCCACCAGATCCAGCATATTTGCGAGGGATCA AGGGGTGGGTAAATCAAATGCGCGGTGA back to top
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