NO06G00350.1, NO06G00350.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G00350.1
Unique NameNO06G00350.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2098
Alignment locationchr6:148078..151001 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:148078..151001 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO06G00350.1 vs.
Match: EWM26076.1 (Ribosomal protein L7/L12 [Nannochloropsis gaditana])

HSP 1 Score: 186.8 bits (473), Expect = 9.700e-44
Identity = 105/123 (85.37%), Postives = 115/123 (93.50%), Query Frame = 0 
Query:  175 MLELGQLLKVLKHRLGLSDADLRGVAVAAPGAGGGAGGGAAA-PVEEEKKEEKDIFDLKLLSYDDKSKIKVIKEVRSISGLGLKEAKELVEGAPKVIKKDVKKEEAEALLKKLQEVGAKVELI 297
            MLELGQLLKVLKHRLGLSDADLRG  + APGAGGG+ GGAAA   EEEK+EEKD FD+KL+S++DKSKIKVIKEVR+ISGLGLKEAKELVEGAPKVIKKDVKKEEAEALLKKLQ+VGAKVEL+
Sbjct:    1 MLELGQLLKVLKHRLGLSDADLRGTVMVAPGAGGGSDGGAAAGAAEEEKQEEKDAFDVKLVSFEDKSKIKVIKEVRTISGLGLKEAKELVEGAPKVIKKDVKKEEAEALLKKLQDVGAKVELV 123
The following BLAST results are available for this feature:
BLAST of NO06G00350.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26076.19.700e-4485.37Ribosomal protein L7/L12 [Nannochloropsis gaditana... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G00350NO06G00350Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G00350.1NO06G00350.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G00350.1.cds1NO06G00350.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G00350.1.cds2NO06G00350.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G00350.1.cds3NO06G00350.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G00350.1.cds4NO06G00350.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G00350.1.cds5NO06G00350.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G00350.1 ID=NO06G00350.1|Name=NO06G00350.1|organism=Nannochloropsis oceanica|type=mRNA|length=2098bp
GTCCATGGCTTCGCTCTGTTGTTTGGTGTAGATGCATTGCCAAGGGAAAG
GAAGGGGAGGGTGAGGGACGGGGCAATGGAGTGATAAAATGAGGACGGCA
CGACGATGTGTGATGGCGAAGAAGTAGTGAGGGGAGGCAGGAGGTGGACG
GGTGGGGCCGTCTATTCCTTTTTGCTTTTTTATGCGCCTGGTCTAAGGCA
CGCACAAAGACACTGGACTTCATTGTGAGTATGCGAGTGTTCTTGCCATG
GTGGAGTGGGTTAGATCAGCCTTACGGGGCATTGGCAATGGCCGGCTGGC
GCGAACTGTCCCAGCGATGAAACAAAGCAAAGGGGGGTGGGTGTATCCAG
TGGAAGGAGGAGTCGTCGCCGCTGTCTTGCCCCCGTATGAGGGGAGGAAG
GTTTTTGAGGCGTCTTTTGTTATCGATGCTGGTGTGAGTGGTGGTGGTGA
AGAATGAAATGAAAAGGAGGGGGAGGTGATGACAACGTGTGGTGGTGGAG
CTGCCTTCACTTGCCCCCTCATTCCACGTCCGCGTGTGTGCTTTTGTTGC
ACTGGTTGGAGCACATTGCTTCCATGCACATCTACACAAATACAAAAGAG
GCATTACAGAACACTTTGAAACCTACTCACGGATCTCGAGAAGGCGCTAT
GCACCTGGCTTAAATTTGGTGTCTCCGATGTCGCCTGTTCCCTCCATCCC
ACCTCCGCACCTCTGCAGTTACCATCATAATTGACTAACCCCCTCCTAAA
AATTGCGTCTTTCTCTCGCGGACGTCGCCATCTCCCTTGACAACAGACAC
GCGAAGGGAAGGACGGACGATGTTCGCACGTGGGGCCCGAGGCGTTGTGG
TCGGAGCGGCAGGGAGCAGCAGCAGCAGCATGAGTAGTGGGAGGAGCAGG
AGCGTATGTCAGTCTCTGAGACCACCACGGCCTTCTCGCGCCACGGTAGC
CACCACCCTTACGCAGGCGTTGAGACCCGGCAGCAGCAGTACTAGTAGCA
GCAGCAGAAGCAGCGGCAGCAGCAGCAGCCTCTACTCTCCATTCAGCAGT
TGGCAACAGCAAAGAACGAGGTCGTGCATAGCAATTGCATTAGGACAACA
GGAGCGGCAACAGCAGCACGAACAGCTTCGGGCACGACAGTGTGCAGGGA
GAGGAGGAGGATGGAGGTACCAGCTCAGTAGCACACGGTGCTTTTCCACG
GAGCCTGTGCTGGAAAACGCGGCCAATCCCCCACCACCTGCCGGGCCAAT
CCCTACTCCAACGGAGGAGAAGGGAGAGGGAGCTCCGCCTGAGGTGTCAG
AGCGCGTGGCCAAGCTAAGCGAAGATATTCTCTCCCTCAACATGCTCGAA
CTTGGCCAACTCCTCAAAGTCTTGAAGCATCGGCTGGGTCTGTCTGATGC
CGATTTGCGCGGCGTGGCTGTCGCGGCGCCAGGTGCCGGGGGAGGAGCCG
GGGGAGGCGCTGCTGCTCCTGTCGAGGAAGAGAAGAAGGAGGAGAAGGAT
ATCTTTGACTTGAAGCTGCTCTCGTACGATGACAAGAGCAAGATCAAGGT
TATCAAGGAGGTGCGCTCTATCAGCGGTCTTGGCTTAAAGGAAGCCAAAG
AACTCGTCGAAGGGGCGCCCAAGGTCATCAAGAAGGACGTGAAGAAGGAG
GAGGCCGAGGCCCTGCTTAAAAAGCTGCAGGAGGTGGGTGCCAAGGTCGA
GCTTATTTAAGGAGGGAGGGAGGGAGAGAGGGAGGGTTACAGAGGGCTGG
CATGGGAGAGGAGGACCACAGGGAACGGGGGAAGGAGGGAGGGAGGGAAG
CAGGGAGAAAAGATGTTGCAGGGAGGGAGAGATGAGGGAAGTGGATAAGG
ATAGAAAATAAGAGAGAAAGAATGGAGGGAGGTGTTGGTTTAAACAGTAG
AATAGTAAAGAGACACTGACCAAAAAGGAGGAGGAGGAAAGAGGGCGTGA
TGAGAATGGAGGGTGCGTGTGTGCGTATGTGCAGGTGGTCAAATTGAAGG
GAGTGTGGTGGCTGTGCGTGTGGGTGTGCGAAGGGGAGAGAGGGGAGGGC
AGACGAATATAGAGGCCTCGAGAGAGAATGAGGGAGGGAGGGCGGGAG
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protein sequence of NO06G00350.1

>NO06G00350.1-protein ID=NO06G00350.1-protein|Name=NO06G00350.1|organism=Nannochloropsis oceanica|type=polypeptide|length=297bp
MFARGARGVVVGAAGSSSSSMSSGRSRSVCQSLRPPRPSRATVATTLTQA
LRPGSSSTSSSSRSSGSSSSLYSPFSSWQQQRTRSCIAIALGQQERQQQH
EQLRARQCAGRGGGWRYQLSSTRCFSTEPVLENAANPPPPAGPIPTPTEE
KGEGAPPEVSERVAKLSEDILSLNMLELGQLLKVLKHRLGLSDADLRGVA
VAAPGAGGGAGGGAAAPVEEEKKEEKDIFDLKLLSYDDKSKIKVIKEVRS
ISGLGLKEAKELVEGAPKVIKKDVKKEEAEALLKKLQEVGAKVELI*
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mRNA from alignment at chr6:148078..151001+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G00350.1 ID=NO06G00350.1|Name=NO06G00350.1|organism=Nannochloropsis oceanica|type=mRNA|length=2924bp|location=Sequence derived from alignment at chr6:148078..151001+ (Nannochloropsis oceanica)
GTCCATGGCTTCGCTCTGTTGTTTGGTGTAGATGCATTGCCAAGGGAAAG
GAAGGGGAGGGTGAGGGACGGGGCAATGGAGTGATAAAATGAGGACGGCA
CGACGATGTGTGATGGCGAAGAAGTAGTGAGGGGAGGCAGGAGGTGGACG
GGTGGGGCCGTCTATTCCTTTTTGCTTTTTTATGCGCCTGGTCTAAGGCA
CGCACAAAGACACTGGACTTCATTGTGAGTATGCGAGTGTTCTTGCCATG
GTGGAGTGGGTTAGATCAGCCTTACGGGGCATTGGCAATGGCCGGCTGGC
GCGAACTGTCCCAGCGATGAAACAAAGCAAAGGGGGGTGGGTGTATCCAG
TGGAAGGAGGAGTCGTCGCCGCTGTCTTGCCCCCGTATGAGGGGAGGAAG
GTTTTTGAGGCGTCTTTTGTTATCGATGCTGGTGTGAGTGGTGGTGGTGA
AGAATGAAATGAAAAGGAGGGGGAGGTGATGACAACGTGTGGTGGTGGAG
CTGCCTTCACTTGCCCCCTCATTCCACGTCCGCGTGTGTGCTTTTGTTGC
ACTGGTTGGAGCACATTGCTTCCATGCACATCTACACAAATACAAAAGAG
GCATTACAGAACACTTTGAAACCTACTCACGGATCTCGAGAAGGCGCTAT
GCACCTGGCTTAAATTTGGTGTCTCCGATGTCGCCTGTTCCCTCCATCCC
ACCTCCGCACCTCTGCAGTTACCATCATAATTGACTAACCCCCTCCTAAA
AATTGCGTCTTTCTCTCGCGGACGTCGCCATCTCCCTTGACAACAGACAC
GCGAAGGGAAGGACGGACGATGTTCGCACGTGGGGCCCGAGGCGTTGTGG
TCGGAGCGGCAGGGAGCAGCAGCAGCAGCATGAGTAGTGGGAGGAGCAGG
AGCGTATGTCAGTCTCTGAGACCACCACGGCCTTCTCGCGCCACGGTAGC
CACCACCCTTACGCAGGCGTTGAGACCCGGCAGCAGCAGTACTAGTAGCA
GCAGCAGAAGCAGCGGCAGCAGCAGCAGCCTCTACTCTCCATTCAGCAGT
TGGCAACAGCAAAGAACGAGGTCGTGCATAGCAATTGCATTAGGACAACA
GGAGCGGCAACAGCAGCACGAACAGCTTCGGGCACGACAGTGTGCAGGGA
GAGGAGGAGGATGGAGGTACCAGCTCAGTAGCACACGGTGCTTTTCCACG
GAGCCTGTGCTGGAAAACGCGGCCAATCCCCCACCACCTGCCGGGCCAAT
CCCTACTCCAACGGAGGAGAAGGGAGAGGGAGGTGAGGACGAGGGAGGGA
GGGAGGAAGGGAGTAGCGTTTTTTGATTGTTTTCGGGGTTTTGTCGATGT
GTGTGTGGTAGTTTTGTTTTTCCCGTCCTAAAGCCATCTCCTTGTCCTCC
TCTTTTCCCTCTCCCACTTGGTAACCCCTCCTTCTTCCCTCCCTTCCTCC
CTCCCTCCCTCCCTCCTTCCCTTCCTCCCTCTTAGCTCCGCCTGAGGTGT
CAGAGCGCGTGGCCAAGCTAAGCGAAGATATTCTCTCCCTCAACATGCTC
GAACTTGGCCAACTCCTCAAAGTCTTGAAGGTACGTGCCCTCCCTACCTC
CCTCCCTCCCTTCCTTCTTCCATTCCTCCATCCTCAACACACTCTCCCTT
CACAATTTACCCTTCCCTCCCTCCCTCCCTCCCTCCCTTTCTCCCTCCAG
CATCGGCTGGGTCTGTCTGATGCCGATTTGCGCGGCGTGGCTGTCGCGGC
GCCAGGTGCCGGGGGAGGAGCCGGGGGAGGCGCTGCTGCTCCTGTCGAGG
AAGAGAAGAAGGAGGAGAAGGATATCTTTGACTTGAAGCTGCTCTCGTAC
GATGACAAGAGCAAGATCAAGGTTATCAAGGAGGTATGTCGTCCTTCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTCCCTGCTCCTCCTCTTTT
CTTGTTCTCTTTTTCCTCTCTTTCAACACTGTCATCTCCCCCCCTCTCCC
TCCCGCTTTCCCCTCCCCTGCTCATTTCATATCCTTTTCTCTTTCCCTGT
CGTTTCGTCTAACCCGCCGCCTCCTCCCCTCCTTCTCCCCTTCTCTCCCC
TCCCTCCCTCCCTCCCTCCCTCTCTCTCCCCCTCCCTCCCTCTGTTCCTT
CAGGTGCGCTCTATCAGCGGTCTTGGCTTAAAGGAAGCCAAAGAACTCGT
CGAAGGGGCGCCCAAGGTCCGTCCCTCTCTCACTCCCTTCCTCCCTCCCT
CCCTTTCTTGATCACTACGAAGCAGGGATCAGGCGCTGTTCAAAACGCAA
CAGTGCCTCCCTCCCTCCCTCCCTCCTGCTCGTCTATCCGTCCAACTCAC
AAATGCATTCTTCCCCCGCCCCTTCCCTCCCTTCCTCTCGTCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCCACCTCCCTGCCCTCCCCAGG
TCATCAAGAAGGACGTGAAGAAGGAGGAGGCCGAGGCCCTGCTTAAAAAG
CTGCAGGAGGTGGGTGCCAAGGTCGAGCTTATTTAAGGAGGGAGGGAGGG
AGAGAGGGAGGGTTACAGAGGGCTGGCATGGGAGAGGAGGACCACAGGGA
ACGGGGGAAGGAGGGAGGGAGGGAAGCAGGGAGAAAAGATGTTGCAGGGA
GGGAGAGATGAGGGAAGTGGATAAGGATAGAAAATAAGAGAGAAAGAATG
GAGGGAGGTGTTGGTTTAAACAGTAGAATAGTAAAGAGACACTGACCAAA
AAGGAGGAGGAGGAAAGAGGGCGTGATGAGAATGGAGGGTGCGTGTGTGC
GTATGTGCAGGTGGTCAAATTGAAGGGAGTGTGGTGGCTGTGCGTGTGGG
TGTGCGAAGGGGAGAGAGGGGAGGGCAGACGAATATAGAGGCCTCGAGAG
AGAATGAGGGAGGGAGGGCGGGAG
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Coding sequence (CDS) from alignment at chr6:148078..151001+

>NO06G00350.1 ID=NO06G00350.1|Name=NO06G00350.1|organism=Nannochloropsis oceanica|type=CDS|length=891bp|location=Sequence derived from alignment at chr6:148078..151001+ (Nannochloropsis oceanica)
ATGTTCGCACGTGGGGCCCGAGGCGTTGTGGTCGGAGCGGCAGGGAGCAG
CAGCAGCAGCATGAGTAGTGGGAGGAGCAGGAGCGTATGTCAGTCTCTGA
GACCACCACGGCCTTCTCGCGCCACGGTAGCCACCACCCTTACGCAGGCG
TTGAGACCCGGCAGCAGCAGTACTAGTAGCAGCAGCAGAAGCAGCGGCAG
CAGCAGCAGCCTCTACTCTCCATTCAGCAGTTGGCAACAGCAAAGAACGA
GGTCGTGCATAGCAATTGCATTAGGACAACAGGAGCGGCAACAGCAGCAC
GAACAGCTTCGGGCACGACAGTGTGCAGGGAGAGGAGGAGGATGGAGGTA
CCAGCTCAGTAGCACACGGTGCTTTTCCACGGAGCCTGTGCTGGAAAACG
CGGCCAATCCCCCACCACCTGCCGGGCCAATCCCTACTCCAACGGAGGAG
AAGGGAGAGGGAGCTCCGCCTGAGGTGTCAGAGCGCGTGGCCAAGCTAAG
CGAAGATATTCTCTCCCTCAACATGCTCGAACTTGGCCAACTCCTCAAAG
TCTTGAAGCATCGGCTGGGTCTGTCTGATGCCGATTTGCGCGGCGTGGCT
GTCGCGGCGCCAGGTGCCGGGGGAGGAGCCGGGGGAGGCGCTGCTGCTCC
TGTCGAGGAAGAGAAGAAGGAGGAGAAGGATATCTTTGACTTGAAGCTGC
TCTCGTACGATGACAAGAGCAAGATCAAGGTTATCAAGGAGGTGCGCTCT
ATCAGCGGTCTTGGCTTAAAGGAAGCCAAAGAACTCGTCGAAGGGGCGCC
CAAGGTCATCAAGAAGGACGTGAAGAAGGAGGAGGCCGAGGCCCTGCTTA
AAAAGCTGCAGGAGGTGGGTGCCAAGGTCGAGCTTATTTAA
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Synonyms
Publications