NO06G00200.1, NO06G00200.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G00200.1
Unique NameNO06G00200.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2365
Alignment locationchr6:81972..86039 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:81972..86039 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO06G00200.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G00200NO06G00200Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G00200.1NO06G00200.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G00200.1.cds1NO06G00200.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G00200.1.cds2NO06G00200.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G00200.1.cds3NO06G00200.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G00200.1.cds4NO06G00200.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G00200.1.cds5NO06G00200.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G00200.1.cds6NO06G00200.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G00200.1.cds7NO06G00200.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G00200.1.cds8NO06G00200.1.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G00200.1.cds9NO06G00200.1.cds9Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G00200.1.cds10NO06G00200.1.cds10Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G00200.1 ID=NO06G00200.1|Name=NO06G00200.1|organism=Nannochloropsis oceanica|type=mRNA|length=2365bp
CATGGTTTTGGGGTTTAATGCTGTCAAGAGGGAGGGAATGGATGGGAGGA
TATCAGCAAGCTAGAGAGGGGTGCGTGGCTGTAGGATGATTTTCGGCAAC
GGCTACAAAAGCACATGTCCTCGGAGCCTTTTTTTGTGCCTTTCCTTCCT
GTGGGTGTGTGCGCCTGGGGTCAGGTGCGCGTCGTACTACAAGGAAAACT
TGTGTCTTGCACCTTGTCACGTAACAATCAGTCGACGCAGCAGTAGCAGC
ATCGCCAGCCCTGTCCGAGAGAAAGTTCCTTGGATAAGTTGAAATGCTCA
TGGCCAACAACAACAAGCATTTCCCAGTCCCAACTACACACGACCCCACG
CACACAGTGACTGAGGACGAGCACCTAAGTCAGGTGGAGAAGACATAATC
ACAAGTGCAGATTTTGCCAGTCTGGCTTCTGAAGCCAGGGGGACACGGAG
GGAAGAAAAAGTCATAATGCCGCGATCAAGCTCCCTCCTACTCGTCGTCT
CCCTCCTCCTTCACTCCTTCCTCGACCCCGTCCAAACGCAAGCCCGAGCC
CAAGCACGAGTTGAAGCGACGAAACCCACAAGAGCTGACGCCTCCACGAT
GGACTTCCTCAGGGACTCGGCCAGGGAGGTGATGCATTGCCCAGGTGCCT
TCCTTGGATGTATCCTCTCGGCCCCCTGCCGTGCCACCATGGCTTGTGCT
GCGCATTGCGTGACGGGAACCAACATGAATCTGACGTGTTTCTTGCCTTG
CACGCAGGGGAACGACCAGACGGCCTTTACTACTTTTACGAACTGTGTCA
TGAAGGAGAGGGCATCGCCGGACCCAGGGGTGGATGACGTGCCCAACGGG
GGGAAATGCCTGGATGTCGAGTCTTTCGTTGTTCCGGATTGGCGGATATC
CTCCCTAGAAGGAGAGTGGTTCGTCGTGGCGGGAGCCTCCACCCTCGAAG
GGTATGACTGTCAGAAGAATCGCGTCTCGGTCCACAACAGCACCCACTGG
CGAATCGATGAGTATTTTCAAGGGGACATAACCGGACTCGGCTTCAAGTG
GGCGCAAACTCTTCAGCTCATCACCCCTCTCCCTCTCTCATTTCCCTCCC
CCTCCTCACGTGGCGACAAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGA
GGGCAGGGGCGCATGAGCTGGCGTCCCTTGGAGGGCGCGAGTGGGTATGA
AGCCACCTACTTCGTTTTGGCCGCTTCAAGCTCCTACATCATCTTCTACT
ACTGTGCGCCTCTCTATCCTACCTCCTCCTACTGGTCATCCTTCCTCTTG
TACTCTCGATCGCCGGAGCCTCCCAAGAAAGGAATGAAAAAAATGCAGCG
ACTCCTCCAAACGTTTGCATGGGACCAGCCTCTCAAGACGGTGAATCATC
AGGACTGTGACTACAAGATCGTGCCTCCCCCTCCTTCCTAATCCTCCTCT
TCCTGATCCATCACCTCTTCCCCCTCCTCCCCCCACCCAACCGCCTTCTC
CTCCTCCTTCTTCTCTTTCACTCCCTCCCTCGTGTTCCATCACCGCGCTT
CCGCCTCCTTCCCTCCTCTCCTTCTTCCTTCAACGGGGAGAGGCACAGCG
AGTTGTAGATAAGATGTCGTCGATGTTACTTGTTTAAAGATTTTGAAGAA
AAGATCAATACCTCATACTCCCTTTTCTCTCTCCTTGTCTCTCTGGTTCA
TTCTGCTTCTCGCACACATACATACACTCGCATGCTCTCTCTCCTTCTTC
CCCCTGCGTCTTCGAGGAGAAGGGAAAGGAGAAGAAAGACCACCCGACTT
TCATCGATGGGCATGCATACGGTATACACATATGGTGGTATTTGAGTCTG
GAGGGAGGGAGGGATTGCATGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAAGAGACCCTCCCCAAACTCCTTTTGGAAGGGACTGAAGAAGGTTATG
ATGGAATTTTGGTATTTGGCCTGTTCGGATGTGCATGAGTCAGAGACATG
AGAATTACTCGTGTATGATGGCTGGTGTGTGGAGAAGGGAAGTGGAGATA
AAACGATGGTGGGGGGCATCCAGTAAGGGGCCTGCCGGGTATGTTCAAAG
TTTGTTCGTCTATCTGGAGTTCAGTGTAGAGACCTCGCGAGGGATGGGGG
GGGGGAGATGAGGGAGGAATGATGAGGAGGAGAGATGACATCGATTTCTT
CGGTTGTTGATGGTGAGGTAGCTGTAGAAAAGTAAGTGAGGGAGGGGAGC
AGGAGTGAAAATAGGAAAAGGGGTTGGAGTGATGTACAGTAGACCACTAA
AGAAGCGAACATGTCGAGAAGAGCGCTGGCATACAAACGAGATGGACAGT
AAATAGCACGACGTG
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protein sequence of NO06G00200.1

>NO06G00200.1-protein ID=NO06G00200.1-protein|Name=NO06G00200.1|organism=Nannochloropsis oceanica|type=polypeptide|length=325bp
MPRSSSLLLVVSLLLHSFLDPVQTQARAQARVEATKPTRADASTMDFLRD
SAREVMHCPGAFLGCILSAPCRATMACAAHCVTGTNMNLTCFLPCTQGND
QTAFTTFTNCVMKERASPDPGVDDVPNGGKCLDVESFVVPDWRISSLEGE
WFVVAGASTLEGYDCQKNRVSVHNSTHWRIDEYFQGDITGLGFKWAQTLQ
LITPLPLSFPSPSSRGDKEGGREGGREGGQGRMSWRPLEGASGYEATYFV
LAASSSYIIFYYCAPLYPTSSYWSSFLLYSRSPEPPKKGMKKMQRLLQTF
AWDQPLKTVNHQDCDYKIVPPPPS*
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mRNA from alignment at chr6:81972..86039+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G00200.1 ID=NO06G00200.1|Name=NO06G00200.1|organism=Nannochloropsis oceanica|type=mRNA|length=4068bp|location=Sequence derived from alignment at chr6:81972..86039+ (Nannochloropsis oceanica)
CATGGTTTTGGGGTTTAATGCTGTCAAGAGGGAGGGAATGGATGGGAGGA
TATCAGCAAGCTAGAGAGGGGTGCGTGGCTGTAGGATGATTTTCGGCAAC
GGCTACAAAAGCACATGTCCTCGGAGCCTTTTTTTGTGCCTTTCCTTCCT
GTGGGTGTGTGCGCCTGGGGTCAGGTGCGCGTCGTACTACAAGGAAAACT
TGTGTCTTGCACCTTGTCACGTAACAATCAGTCGACGCAGCAGTAGCAGC
ATCGCCAGCCCTGTCCGAGAGAAAGTTCCTTGGATAAGTTGAAATGCTCA
TGGCCAACAACAACAAGCATTTCCCAGTCCCAACTACACACGACCCCACG
CACACAGTGACTGAGGACGAGCACCTAAGTCAGGTGGAGAAGACATAATC
ACAAGTGCAGATTTTGCCAGTCTGGCTTCTGAAGCCAGGGGGACACGGAG
GGAAGAAAAAGTCATAATGCCGCGATCAAGCTCCCTCCTACTCGTCGTCT
CCCTCCTCCTTCACTCCTTCCTCGACCCCGTCCAAACGCAAGCCCGAGCC
CAAGCACGAGTTGAAGCGACGAAACCCACAAGAGCTGACGCCTCCACGAT
GGACTTCCTCAGGGACTCGGCCAGGGAGGTGATGCATTGCCCAGGTGAGA
AGGGAGGGAGAGAGGGAGGGAGGGAGGGAAGAAGGGCAGGCAAGAATGGA
CGCACGGTTTGAAAGGACCTCTTAGGATATATAGATCAGGCATGAAGAAA
CAGCCATCAAGATGTAGTGCTACATGGCCTTGTCAACATGTCTCTCGTCC
AGCACAATTTCATCTTTCGACCTCCCCCTCCCTCCCTCCCTCCCTCCCTC
CCTCCCTGTCAGGTGCCTTCCTTGGATGTATCCTCTCGGCCCCCTGCCGT
GCCACCATGGCTTGTGCTGCGCATTGCGTGACGGGAACCAACATGAATCT
GACGTGTTTCTTGCCTTGCACGCAGGGGAACGACCAGACGGTACGCTGCC
CTCTCCCCTCCCTCCCTCCTTCTATCCCTGCGTCCCACCCTTCTATCTCA
CCGATGTAAACGTGTACATATACATGCACATATGTACTTACATACGCCTA
TCCACGCTTTAGGCCTTTACTACTTTTACGAACTGTGTCATGAAGGAGAG
GGCATCGCCGGACCCAGGGGTGGATGACGTGCCCAACGGGGGGAAATGCC
TGGATGTCGAGGTGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGG
CTCGCTCACACACCCTCTCTGCTCCCATACTTTTTTTTAATTGTTCCTCC
CCCTACCCCCTTTCTACCCCCTCCTCCCTCTTCCTCCCCCTCCTCCTCCT
CCTCCGCCTCCTCCTGCTCCTGCTCTTCCTCCCCCTCCTCCTTCTTCTTC
TACCCCTATTTCTCCTCCTTCCTAATCAAAATACTTATCAAGTCTTTCGT
TGTTCCGGATTGGCGGATATCCTCCCTAGAAGGAGAGTGGTTCGTCGTGG
CGGTACGTCCTCCTCCCTCCCTCCCTCCTTCCCTCCCTCCCTCCCCTCTC
TCCTCCAGGGTACCTCCACCCACGAAATTTGACACGTGTTCCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCTTCAGGGAGCCTCCACCCTCGAAGGG
TATGACTGTCAGAAGAATCGCGTCTCGGTCCACAACAGCACCCACTGGCG
AATCGATGAGTAAGGAGGGAGGGAGGGGAGGAAGGAAGGAAGGAAGGTAG
AAAGGAGAAAGGGACGAGGGAGGGATGGAGGGAGGGATGGAGAAAGGGAG
GAGAAGAGGGAAGGAGTCTGGGACCAGGACTCAGACATATCCATGCTTCC
TGACCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCCAGGTATTTTCAAGGGGACATAACCGGACTCGGCTTCAAGTGGGCGC
AAACTCTTCAGGTCCCTCCCTCCCTCCGTCCCGCCCTCTCTCCGTCCCGC
CTTCCCTCCGTCCCGCCCTCCCTCCGTCCCTCCCTCCCTCCATCCCGCCC
TCCCCCCCTGCCTGCCTGCCTCCCTCCCTCCTTTCTTCATCGCATTGCTG
TTGCTTCACTCTCACATGTTCTCTATCTTTGTATTACATCCTTCTCCCTC
CTTCCCTCCCTTCCTCCCTCATCGCAGCTCATCACCCCTCTCCCTCTCTC
ATTTCCCTCCCCCTCCTCACGTGGCGACAAGGAGGGAGGGAGGGAGGGAG
GGAGGGAGGGAGGGCAGGGGCGCATGAGCTGGCGTCCCTTGGAGGGCGCG
AGTGGGTATGAAGCCACCTACTTCGTTTTGGCCGCTTCAAGTAAGAAAGG
GAGGGAGGGAGGGAGAGAGGGAGGGAAAGAAGGAGGGAAGGGAACAGGAT
GATACCCGGATAGTCTATCATGTGAAGATCTCAACTTACCCTTCTTTCCC
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTAGGCTCCTA
CATCATCTTCTACTACTGTGCGCCTCTCTATCCTACCTCCTCCTACTGGT
CATCCTTCCTCTTGTACTCTCGATCGCCGGAGCCTCCCAAGAAAGGAATG
AAAAAAATGCAGCGTACGTCCACCCCTCCCTCCCTCCCTCCCTCCCTCCA
TCCATCCCTCTCTCTCTCTCCCTCCCTTCGCCCCTAACTTACTCACTGAC
GCACCGATTCAACCCGTTTCTCCTTCCCTCCCTCCCTCGTGCCCTCCCTC
CCTCCCTCTCTCTCTCTCTCCTTCCTTTCAGGACTCCTCCAAACGTTTGC
ATGGGACCAGCCTCTCAAGACGGTGAATCATCAGGTAGGGAGGGAGGGAG
GGAGGGAATGAGGGAGGGAGGGAAGGAGGGAGGGAGGGAAGGAGGGAAGG
AGGGAGGTTTTGAATCGGTGGGTGAGGGAGTAAGTTAGGGGCGAAGGGAG
GGGGGGAGGGAGGGAGGGAGGGAGAGAGGGGGAGAAGACGAGAGAGAGCA
TGTCTCGTTTTCCCTTCTTTGTGTTTTGTAGTTTTAAACGCAACGTTTTT
AACCGCTCCTTCCTTGCCTCCCTCTCTCCCTCCCTCCCTCCCAACACACC
TCTAGGACTGTGACTACAAGATCGTGCCTCCCCCTCCTTCCTAATCCTCC
TCTTCCTGATCCATCACCTCTTCCCCCTCCTCCCCCCACCCAACCGCCTT
CTCCTCCTCCTTCTTCTCTTTCACTCCCTCCCTCGTGTTCCATCACCGCG
CTTCCGCCTCCTTCCCTCCTCTCCTTCTTCCTTCAACGGGGAGAGGCACA
GCGAGTTGTAGATAAGATGTCGTCGATGTTACTTGTTTAAAGATTTTGAA
GAAAAGATCAATACCTCATACTCCCTTTTCTCTCTCCTTGTCTCTCTGGT
TCATTCTGCTTCTCGCACACATACATACACTCGCATGCTCTCTCTCCTTC
TTCCCCCTGCGTCTTCGAGGAGAAGGGAAAGGAGAAGAAAGACCACCCGA
CTTTCATCGATGGGCATGCATACGGTATACACATATGGTGGTATTTGAGT
CTGGAGGGAGGGAGGGATTGCATGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAAGAGACCCTCCCCAAACTCCTTTTGGAAGGGACTGAAGAAGGTT
ATGATGGAATTTTGGTATTTGGCCTGTTCGGATGTGCATGAGTCAGAGAC
ATGAGAATTACTCGTGTATGATGGCTGGTGTGTGGAGAAGGGAAGTGGAG
ATAAAACGATGGTGGGGGGCATCCAGTAAGGGGCCTGCCGGGTATGTTCA
AAGTTTGTTCGTCTATCTGGAGTTCAGTGTAGAGACCTCGCGAGGGATGG
GGGGGGGGAGATGAGGGAGGAATGATGAGGAGGAGAGATGACATCGATTT
CTTCGGTTGTTGATGGTGAGGTAGCTGTAGAAAAGTAAGTGAGGGAGGGG
AGCAGGAGTGAAAATAGGAAAAGGGGTTGGAGTGATGTACAGTAGACCAC
TAAAGAAGCGAACATGTCGAGAAGAGCGCTGGCATACAAACGAGATGGAC
AGTAAATAGCACGACGTG
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Coding sequence (CDS) from alignment at chr6:81972..86039+

>NO06G00200.1 ID=NO06G00200.1|Name=NO06G00200.1|organism=Nannochloropsis oceanica|type=CDS|length=975bp|location=Sequence derived from alignment at chr6:81972..86039+ (Nannochloropsis oceanica)
ATGCCGCGATCAAGCTCCCTCCTACTCGTCGTCTCCCTCCTCCTTCACTC
CTTCCTCGACCCCGTCCAAACGCAAGCCCGAGCCCAAGCACGAGTTGAAG
CGACGAAACCCACAAGAGCTGACGCCTCCACGATGGACTTCCTCAGGGAC
TCGGCCAGGGAGGTGATGCATTGCCCAGGTGCCTTCCTTGGATGTATCCT
CTCGGCCCCCTGCCGTGCCACCATGGCTTGTGCTGCGCATTGCGTGACGG
GAACCAACATGAATCTGACGTGTTTCTTGCCTTGCACGCAGGGGAACGAC
CAGACGGCCTTTACTACTTTTACGAACTGTGTCATGAAGGAGAGGGCATC
GCCGGACCCAGGGGTGGATGACGTGCCCAACGGGGGGAAATGCCTGGATG
TCGAGTCTTTCGTTGTTCCGGATTGGCGGATATCCTCCCTAGAAGGAGAG
TGGTTCGTCGTGGCGGGAGCCTCCACCCTCGAAGGGTATGACTGTCAGAA
GAATCGCGTCTCGGTCCACAACAGCACCCACTGGCGAATCGATGAGTATT
TTCAAGGGGACATAACCGGACTCGGCTTCAAGTGGGCGCAAACTCTTCAG
CTCATCACCCCTCTCCCTCTCTCATTTCCCTCCCCCTCCTCACGTGGCGA
CAAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGCAGGGGCGCATGA
GCTGGCGTCCCTTGGAGGGCGCGAGTGGGTATGAAGCCACCTACTTCGTT
TTGGCCGCTTCAAGCTCCTACATCATCTTCTACTACTGTGCGCCTCTCTA
TCCTACCTCCTCCTACTGGTCATCCTTCCTCTTGTACTCTCGATCGCCGG
AGCCTCCCAAGAAAGGAATGAAAAAAATGCAGCGACTCCTCCAAACGTTT
GCATGGGACCAGCCTCTCAAGACGGTGAATCATCAGGACTGTGACTACAA
GATCGTGCCTCCCCCTCCTTCCTAA
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Synonyms
Publications