NO06G00180.1, NO06G00180.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G00180.1
Unique NameNO06G00180.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1016
Alignment locationchr6:76532..78162 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:76532..78162 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO06G00180.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G00180NO06G00180Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G00180.1NO06G00180.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G00180.1.cds1NO06G00180.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G00180.1.cds2NO06G00180.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G00180.1.cds3NO06G00180.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G00180.1.cds4NO06G00180.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G00180.1.cds5NO06G00180.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G00180.1 ID=NO06G00180.1|Name=NO06G00180.1|organism=Nannochloropsis oceanica|type=mRNA|length=1016bp
ACAGCGCGAGCACCAGACAAACCATTAGCGTAAACATAAGTAATATTAAT
ATGTCGATGAGCGCATCCAACGCTGGCTCCCACTCCTTTCGTGATCCCCA
TGACCACGACGAATGCAGCAGCGGCAGCGACAGCAGCAGCACCAGCAGTC
GGAGGAGTGGCACGCCCAAAGTGCAAGCAGCTACCTTTTCTGCCCCTTCG
ACCGCAATCTTTCATGATTCCATGAGCTGGGATCGACAAAATGGTGGAGA
TCGGCCTTGTCATCTGTTTTATGCCTACGAGGATGATAAATCCCTCCCCG
ACCTGATCCGTGCCAAGGCCGCCGTGCACGTTGACCTTGCCCTTCCTCCC
TCTTGCCCTCCCCCGTCCACTGCAAGAAGAAGAGAAGCTGATCAGGGGCT
AGAAATGAGGGAGAAAGACCTAGAGAGGGAAGAGGGGCGGGCGTCTTCGG
TATCGTTGACCATCAAAGACTGCCGCTCTCTCCATCCTTCCTCTCTACGC
ATCTACGGCGCAGAGATCACACCCTCTGGCTCCTCCCCCTCCGTCACCTC
AAGGCAGGAGAAAAAATGCGAGGGAGGGAAGGAAGGAGGGGTGTTGAGGC
TCTATGGCTTCTGCAAGCCGAGCACTGAGGCAGAATCCCCGGATGACATC
TTACAAGGAATGGAGCAGAGAAACCAGCTGCTGCGAGCGGCACTGGCGGG
AGAGGGTCTCAAACGGACCTGAAAGAGAAGAGGGAGGGAAAGAGAAGAAG
GCCGGGGAAAGAAAGACAGGGGGGGGGGGAGAGAGAGGAAAAGAGAAAAT
AAGAAAGCAAAAGAATAGACGGGAGGAAAGGAAAGAGAGGGAGAGGAGAC
TAAAAGGAGAGAAGAGGCTTTCACCAGGGCCTCAGAATGCAGAATGGGAT
CTGAAGATCATGAATCAGGCATGTACGAAGTACCCTCGGATGACAGTATT
GATACCATACTGATGCTGATGTTGACGTTAACATCAAAGCGAGAGAGATA
TATTCGAAAGAAGATT
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protein sequence of NO06G00180.1

>NO06G00180.1-protein ID=NO06G00180.1-protein|Name=NO06G00180.1|organism=Nannochloropsis oceanica|type=polypeptide|length=224bp
MSMSASNAGSHSFRDPHDHDECSSGSDSSSTSSRRSGTPKVQAATFSAPS
TAIFHDSMSWDRQNGGDRPCHLFYAYEDDKSLPDLIRAKAAVHVDLALPP
SCPPPSTARRREADQGLEMREKDLEREEGRASSVSLTIKDCRSLHPSSLR
IYGAEITPSGSSPSVTSRQEKKCEGGKEGGVLRLYGFCKPSTEAESPDDI
LQGMEQRNQLLRAALAGEGLKRT*
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mRNA from alignment at chr6:76532..78162+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G00180.1 ID=NO06G00180.1|Name=NO06G00180.1|organism=Nannochloropsis oceanica|type=mRNA|length=1631bp|location=Sequence derived from alignment at chr6:76532..78162+ (Nannochloropsis oceanica)
ACAGCGCGAGCACCAGACAAACCATTAGCGTAAACATAAGTAATATTAAT ATGTCGATGAGCGCATCCAACGCTGGCTCCCACTCCTTTCGTGATCCCCA TGACCACGACGAATGCAGCAGCGGCAGCGACAGCAGCAGCACCAGCAGTC GGAGGAGTGGCACGCCCAAAGTGCAAGCAGCTACCTTTTCTGCCCCTTCG ACCGCAATCTTTCATGATTCCATGAGCTGGGATCGACAAAATGGTGGAGA TCGGCCTTGTCATCTGTTTTATGCCTACGAGGATGATGTAAGGGAACGAA GGGAGGAAAGGAAAGAGAGGGAAGGAGGAGACTATCTGCGAATACTAATG GTGTGAGCGAAGGAGCACGGAAGAAAATTAGGCAAAAAGGGGTGTGGCTT CGATGTCTTATTCTCAGTATCCTCTTGTCCCACATTAGAAATCCCTCCCC GACCTGATCCGTGCCAAGGCCGCCGTGCACGTTGACCTTGCCCTTCCTCC CTCTTGCCCTCCCCCGTCCACTGCAAGAAGAAGAGAAGCTGATCAGGGGC TAGAAATGAGGGAGAAAGACCTAGAGAGGGAAGAGGGGCGGGCGTCTTCG GTATCGTTGTAAGTGTCCTTTGTATGCATAGATCAATAGCCTTCCTCTCC GTCCTCCTCCCCTCCCTTTCTCCTTTTTCTTCTCCATCCTCCCTTCCTCC CTTTCCAATATCCTCACGCTCACTTTACCCCCTCCTTCCTTCCTTCCTTT CTTCTTCTCCGTTGTCCTTCCTCCTCAGGACCATCAAAGACTGCCGCTCT CTCCATCCTTCCTCTCTACGCATCTACGGCGCAGAGATCACACCCTCTGG CTCCTCCCCCTCCGTCACCTCAAGGCAGGAGAAAAAATGCGAGGGAGGGA AGGAAGGAGGGGTGTTGAGGCTCTATGGCTTCTGCAAGCCGAGGTGGGTA GGGAGGGACGGAGGAAGGGGAGGGGGGCAGGAAGAATGGAGGGACGATAT GGTTGTATTTCATTTCAGTCTGGCATTTTTCATTCCCTCTTTGCTCCCCT CCTCCATCCACCTCCCCTTCTCTCCTTTCTACAGCACTGAGGCAGAATCC CCGGATGACATCTTACAAGGAATGGAGCAGAGGTAAGGAAGGAGGGAGGG GGGGGGTGTTGGGGCTGGTCTCCGATTCGGGTGGCCCATTTCTCTGTTTC CTACCAACATTCTTCCCTCCCTCCCTCCCTCCTTCCCTCCCTCCCTCCCT CCCTCCCTCCCTTTGTCCCTCCTACTGGACAACAGAAACCAGCTGCTGCG AGCGGCACTGGCGGGAGAGGGTCTCAAACGGACCTGAAAGAGAAGAGGGA GGGAAAGAGAAGAAGGCCGGGGAAAGAAAGACAGGGGGGGGGGGAGAGAG AGGAAAAGAGAAAATAAGAAAGCAAAAGAATAGACGGGAGGAAAGGAAAG AGAGGGAGAGGAGACTAAAAGGAGAGAAGAGGCTTTCACCAGGGCCTCAG AATGCAGAATGGGATCTGAAGATCATGAATCAGGCATGTACGAAGTACCC TCGGATGACAGTATTGATACCATACTGATGCTGATGTTGACGTTAACATC AAAGCGAGAGAGATATATTCGAAAGAAGATT
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Coding sequence (CDS) from alignment at chr6:76532..78162+

>NO06G00180.1 ID=NO06G00180.1|Name=NO06G00180.1|organism=Nannochloropsis oceanica|type=CDS|length=672bp|location=Sequence derived from alignment at chr6:76532..78162+ (Nannochloropsis oceanica)
ATGTCGATGAGCGCATCCAACGCTGGCTCCCACTCCTTTCGTGATCCCCA
TGACCACGACGAATGCAGCAGCGGCAGCGACAGCAGCAGCACCAGCAGTC
GGAGGAGTGGCACGCCCAAAGTGCAAGCAGCTACCTTTTCTGCCCCTTCG
ACCGCAATCTTTCATGATTCCATGAGCTGGGATCGACAAAATGGTGGAGA
TCGGCCTTGTCATCTGTTTTATGCCTACGAGGATGATAAATCCCTCCCCG
ACCTGATCCGTGCCAAGGCCGCCGTGCACGTTGACCTTGCCCTTCCTCCC
TCTTGCCCTCCCCCGTCCACTGCAAGAAGAAGAGAAGCTGATCAGGGGCT
AGAAATGAGGGAGAAAGACCTAGAGAGGGAAGAGGGGCGGGCGTCTTCGG
TATCGTTGACCATCAAAGACTGCCGCTCTCTCCATCCTTCCTCTCTACGC
ATCTACGGCGCAGAGATCACACCCTCTGGCTCCTCCCCCTCCGTCACCTC
AAGGCAGGAGAAAAAATGCGAGGGAGGGAAGGAAGGAGGGGTGTTGAGGC
TCTATGGCTTCTGCAAGCCGAGCACTGAGGCAGAATCCCCGGATGACATC
TTACAAGGAATGGAGCAGAGAAACCAGCTGCTGCGAGCGGCACTGGCGGG
AGAGGGTCTCAAACGGACCTGA
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Synonyms
Publications