NO06G00140.1, NO06G00140.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G00140.1
Unique NameNO06G00140.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1527
Alignment locationchr6:61344..63939 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:61344..63939 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO06G00140.1 vs.
Match: XP_005777116.1 (Deoxyribodipyrimidine photolyase/cryptochrome [Emiliania huxleyi CCMP1516]; EOD24687.1 Deoxyribodipyrimidine photolyase/cryptochrome [Emiliania huxleyi CCMP1516])

HSP 1 Score: 169.1 bits (427), Expect = 2.100e-38
Identity = 93/207 (44.93%), Postives = 128/207 (61.84%), Query Frame = 0
Query:    1 MKYQHVGRDTEGAYAHIKSFCTDAASEGVREVLLVSGSGPKRKLDPAACLERLSKDKQARGSFLSSLRFGVAFNPYLPEME---EEESRFRAKIATGLVSSVWLQLGSDTAALRKGLDFVRIETEGRSPPIRVIGSVVIPSRKFLAMMKFRPWSGVRLSETYLSSVEEANKATKAILNVYKAYGVEPIVESAVKNEADLEQVKNLLG 205
            +K+ +  RD        ++FC +AAS  VRE+LLVSGSG  R  D  ACL+ L+   + R +       GVAFNP+ P+      E +R R K+ TG VS++WLQ+GSD   LR+ L F+  E  G  P +R+ GSV +PSRK LA +KFRPW+GV LS  YLSSVE A+  T  +L+ Y  +GVEP++ESAV++ A+    +  LG
Sbjct:   69 LKFNNDARDPASTLRRFEAFCEEAASLHVREILLVSGSG-SRSFDSLACLKALTLPAERRPAI------GVAFNPFFPDRAARMRERARLRQKLNTGAVSAIWLQIGSDVLLLREALAFLA-ELRGVHPALRLYGSVFLPSRKLLAQLKFRPWNGVFLSAEYLSSVEVASTITCRVLDAYATHGVEPLLESAVRSRAEWRAAREQLG 267          
The following BLAST results are available for this feature:
BLAST of NO06G00140.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005777116.12.100e-3844.93Deoxyribodipyrimidine photolyase/cryptochrome [Emi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G00140NO06G00140Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G00140.1NO06G00140.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G00140.1.cds1NO06G00140.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G00140.1.cds2NO06G00140.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G00140.1.cds3NO06G00140.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G00140.1.cds4NO06G00140.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G00140.1.cds5NO06G00140.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G00140.1.cds6NO06G00140.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G00140.1.cds7NO06G00140.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G00140.1.cds8NO06G00140.1.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G00140.1 ID=NO06G00140.1|Name=NO06G00140.1|organism=Nannochloropsis oceanica|type=mRNA|length=1527bp
CGCTGATGTGGTGTGGAGTGCTTCAATCGCTGATGACTCCCAGCGTGGCG
TGCCGGTATGCTCCGTGCTTGTCCAAGCAAATCCCGCCTCTTAGACACAC
GCGCGAGCACATGGGGTCTAAGACAAGGCGGTGAAGAAGACGCTCGACGT
ATTTGGTTACGGCTGTGTGCGGGCGAATATACCCTTTAAGAACCTCCTCA
CCCCCGCCCTCCCTCTCCCTCCCCTCCTTCCTTCCTTCCCATTTAAGCAA
CAGCCCTGCCCAGCAGCACAGATGCGTCTCGAACTCTTCTTCAAAACAGC
CTCGGAGCTGCAAACTCTTATTGCCCTGGTCCAAGGCGCAAACATCGGTG
CTGTCAATCTTGTCAACAAGAGCAAGACAGACCCGTTACTGCAATACGTG
CGGACACTCAAGGTGAGAAGGTCCGGGTGTAATGAAAGGAAGCAAAGGAT
ACGAGGGGATAAGGAGGGAAGATAGGAGTATGGAGTGCCTGGGCATGCAT
CCTCACGCGCACCTAACTCGCTTAATGTCTCACCTTTCGTCGCCTGCAAC
AACAGAGCGCCTTCCCCGCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCC
TCCTCCTCCTCCTCGCCCTTGGACATCGTTCCGCATTTCTCTATGAAATA
TCAACACGTCGGTAGAGACACCGAGGGGGCCTACGCACACATCAAGTCGT
TCTGTACCGATGCCGCCTCCGAGGGAGTGAGGGAAGTCCTCCTTGTCTCT
GGGAGTGGACCCAAAAGAAAACTCGACCCGGCGGCGTGCCTGGAGCGCCT
GTCCAAGGACAAGCAAGCCCGGGGCTCCTTCCTCTCCTCCCTTCGCTTTG
GAGTGGCCTTCAACCCGTACCTACCTGAGATGGAAGAGGAGGAGAGCCGT
TTTCGAGCCAAAATAGCCACGGGCCTGGTGTCTTCAGTGTGGCTGCAGCT
CGGGAGCGACACCGCCGCCCTCAGGAAAGGCCTGGATTTTGTGCGGATCG
AAACGGAGGGGAGGAGTCCGCCCATCCGTGTCATCGGCTCCGTCGTCATC
CCCTCCAGAAAGTTCCTGGCCATGATGAAATTTCGACCCTGGAGCGGTGT
GCGTTTAAGTGAGACGTATCTCTCGTCAGTGGAGGAAGCGAATAAAGCCA
CCAAAGCCATTCTCAATGTCTACAAGGCATACGGAGTGGAGCCTATCGTA
GAGAGTGCCGTTAAAAACGAGGCGGATCTCGAGCAAGTGAAGAATCTGCT
CGGCGACTTGTACGGCTCCTCTCCAACAAGCAGCAGCAGCAGCAGTAAAT
CCGTAGGGGTCAGAAGAGGAGTAGGGGCAGCGGCACTCGGAGCAGCAATA
GCAGGAGGAGGGAGGGAGGGAGGGAGAGAGAGAGGGATGGAGGGAGGGAG
GGCAACGCGTACTCTTCACTCCGCCTTTCCTGCTACACCGACGACAGAGG
CCGGTCAAAAAAGGGCGCGAAACGTTTCAGGAGGGGGGGAGGGAGGAAGG
GAGGGAGGGAGGGGGAAGGAAAGATAG
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protein sequence of NO06G00140.1

>NO06G00140.1-protein ID=NO06G00140.1-protein|Name=NO06G00140.1|organism=Nannochloropsis oceanica|type=polypeptide|length=295bp
MKYQHVGRDTEGAYAHIKSFCTDAASEGVREVLLVSGSGPKRKLDPAACL
ERLSKDKQARGSFLSSLRFGVAFNPYLPEMEEEESRFRAKIATGLVSSVW
LQLGSDTAALRKGLDFVRIETEGRSPPIRVIGSVVIPSRKFLAMMKFRPW
SGVRLSETYLSSVEEANKATKAILNVYKAYGVEPIVESAVKNEADLEQVK
NLLGDLYGSSPTSSSSSSKSVGVRRGVGAAALGAAIAGGGREGGRERGME
GGRATRTLHSAFPATPTTEAGQKRARNVSGGGEGGREGGRGKER*
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mRNA from alignment at chr6:61344..63939+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G00140.1 ID=NO06G00140.1|Name=NO06G00140.1|organism=Nannochloropsis oceanica|type=mRNA|length=2596bp|location=Sequence derived from alignment at chr6:61344..63939+ (Nannochloropsis oceanica)
CGCTGATGTGGTGTGGAGTGCTTCAATCGCTGATGACTCCCAGCGTGGCG TGCCGGTATGCTCCGTGCTTGTCCAAGCAAATCCCGCCTCTTAGACACAC GCGCGAGCACATGGGGTCTAAGACAAGGCGGTGAAGAAGACGCTCGACGT ATTTGGTTACGGCTGTGTGCGGGCGAATATACCCTTTAAGAACCTCCTCA CCCCCGCCCTCCCTCTCCCTCCCCTCCTTCCTTCCTTCCCATTTAAGCAA CAGCCCTGCCCAGCAGCACAGATGCGTCTCGAACTCTTCTTCAAAACAGC CTCGGAGCTGCAAACTCTTATTGCCCTGGTCCAAGGCGCAAACATCGGTG CTGTCAATCTTGTCAACAAGAGCAAGACAGACCCGTTACTGCAATACGTG CGGACACTCAAGGTGAGAAGGTCCGGGTGTAATGAAAGGAAGCAAAGGAT ACGAGGGGATAAGGAGGGAAGATAGGAGTATGGAGTGCCTGGGCATGCAT CCTCACGCGCACCTAACTCGCTTAATGTCTCACCTTTCGTCGCCTGCAAC AACAGAGCGCCTTCCCCGCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCC TCCTCCTCCTCCTCGCCCTTGGACATCGTTCCGCATTTCTCTATGAAATA TCAACACGTCGGTAGAGACACCGAGGGGGCCTACGCACACATCAAGGTGC GTTTGGCCCGCGTTTCCTCCCTGGAGTGTTTCTCTCATCCCTGCTCCATA TCCCCGAATCAGCTCCAAATTACTCATCCTCCCTCCCTCCCTCCTTCCCT CCGAATCTCCCTCATCTCCCTAGTCGTTCTGTACCGATGCCGCCTCCGAG GGAGTGAGGGAAGTCCTCCTTGTCTCTGGGAGTGGACCCAAAAGAAAACT CGACCCGGCGGCGTGCCTGGAGCGGTACGTGCCCTTCCTTCCCTCCCTCC CTTCCTCCCTCCCTCGTCCTCCCTTCCCCCCTTCCATCCTCCCTAGCCCC TCGTCCATGTCACTTGTCATCCACACTCGCCATTGGCCTTCCTTCCCTCC CTTCTGCCTGCCCTCCCTCCCTCCCTCCCTGCATAGCCTGTCCAAGGACA AGCAAGCCCGGGGCTCCTTCCTCTCCTCCCTTCGCTTTGGAGTGGCCTTC AACCCGTACCTACCTGAGATGGAAGAGGAGGAGAGCCGTTTTCGAGGTAG GTAGGGAGGGAGGGAGGGAAAGAGGGAGGGAGGAAAGGGGATCACAGTCG ATGCATCACCTGAGCCTGAAAACACCTCCCTCCCTCCCCCCACCCCTCCC TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCAGCCAAA ATAGCCACGGGCCTGGTGTCTTCAGTGTGGCTGCAGCTCGGGAGCGACAC CGCCGCCCTCAGGAAAGGCCTGGATTTTGTGCGGATCGAAACGGAGGGGA GGAGGTGAGAGAGGGAGGGAGGGAGGGAGGGAGGGTAGTGAGGCTCATGA CATATATTAGCGGTCTTGCTACACGTATCGTTTTTCCAACTCTCCCTCCC TTCCTCCCTCCCTCCTTCTTCCCCTCCCTCTCTCATTCCCTCCCTCAGTC CGCCCATCCGTGTCATCGGCTCCGTCGTCATCCCCTCCAGAAAGTTCCTG GCCATGGTGCGTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTCCTTC CTCCTTCCCTCTCTCCTCCCTTTTTCCCTTCCCTCCATCCCTCCCTGTTT CCCTCACCTCCCCTCCTCCCTCCTTCCCTCCCATCCTCCCTCCCTCACCT CCTCCCTTCATCAGATGAAATTTCGACCCTGGAGCGGTGTGCGTTTAAGT GAGACGTATCTCTCGTCAGTGGAGGAAGCGAATAAAGCCACCAAAGCCAT TCTCAATGTCTACAAGGCATACGGAGGTCCGTCCCCGCCCTTCCTTCCTC CCTCCCTCCCTCCCTCCCCCTCTCACTCCTTCCCTCCCTCCGGTCAATTT TTTATTGCATCTGACATCTGCCTGCCTTCCCTCCCTCCCTCCCTCCCTCC CTCCCTCCCTCCCTCCCTCCCTCCAGTGGAGCCTATCGTAGAGAGTGCCG TTAAAAACGAGGCGGATCTCGAGCAAGTGAAGAATCTGCTCGGCGACTTG TACGGGTGAGGGAGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGG AGGGATATGGAGGCAGGCAGGCAGGGAGGGATATGGAGGGAGGGAGGGAG GGAGGGAGGTATAATCAGGGAGGGAGGGAGGTATAATCGGAAACCGACTC GCTTGTTATGCTCTTACCTCTCGTTCCTTTCCAGCTCCTCTCCAACAAGC AGCAGCAGCAGCAGTAAATCCGTAGGGGTCAGAAGAGGAGTAGGGGCAGC GGCACTCGGAGCAGCAATAGCAGGAGGAGGGAGGGAGGGAGGGAGAGAGA GAGGGATGGAGGGAGGGAGGGCAACGCGTACTCTTCACTCCGCCTTTCCT GCTACACCGACGACAGAGGCCGGTCAAAAAAGGGCGCGAAACGTTTCAGG AGGGGGGGAGGGAGGAAGGGAGGGAGGGAGGGGGAAGGAAAGATAG
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Coding sequence (CDS) from alignment at chr6:61344..63939+

>NO06G00140.1 ID=NO06G00140.1|Name=NO06G00140.1|organism=Nannochloropsis oceanica|type=CDS|length=885bp|location=Sequence derived from alignment at chr6:61344..63939+ (Nannochloropsis oceanica)
ATGAAATATCAACACGTCGGTAGAGACACCGAGGGGGCCTACGCACACAT
CAAGTCGTTCTGTACCGATGCCGCCTCCGAGGGAGTGAGGGAAGTCCTCC
TTGTCTCTGGGAGTGGACCCAAAAGAAAACTCGACCCGGCGGCGTGCCTG
GAGCGCCTGTCCAAGGACAAGCAAGCCCGGGGCTCCTTCCTCTCCTCCCT
TCGCTTTGGAGTGGCCTTCAACCCGTACCTACCTGAGATGGAAGAGGAGG
AGAGCCGTTTTCGAGCCAAAATAGCCACGGGCCTGGTGTCTTCAGTGTGG
CTGCAGCTCGGGAGCGACACCGCCGCCCTCAGGAAAGGCCTGGATTTTGT
GCGGATCGAAACGGAGGGGAGGAGTCCGCCCATCCGTGTCATCGGCTCCG
TCGTCATCCCCTCCAGAAAGTTCCTGGCCATGATGAAATTTCGACCCTGG
AGCGGTGTGCGTTTAAGTGAGACGTATCTCTCGTCAGTGGAGGAAGCGAA
TAAAGCCACCAAAGCCATTCTCAATGTCTACAAGGCATACGGAGTGGAGC
CTATCGTAGAGAGTGCCGTTAAAAACGAGGCGGATCTCGAGCAAGTGAAG
AATCTGCTCGGCGACTTGTACGGCTCCTCTCCAACAAGCAGCAGCAGCAG
CAGTAAATCCGTAGGGGTCAGAAGAGGAGTAGGGGCAGCGGCACTCGGAG
CAGCAATAGCAGGAGGAGGGAGGGAGGGAGGGAGAGAGAGAGGGATGGAG
GGAGGGAGGGCAACGCGTACTCTTCACTCCGCCTTTCCTGCTACACCGAC
GACAGAGGCCGGTCAAAAAAGGGCGCGAAACGTTTCAGGAGGGGGGGAGG
GAGGAAGGGAGGGAGGGAGGGGGAAGGAAAGATAG
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Synonyms
Publications