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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr6 | genome | chr6:61344..63939 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO06G00140.1 vs.
Match: XP_005777116.1 (Deoxyribodipyrimidine photolyase/cryptochrome [Emiliania huxleyi CCMP1516]; EOD24687.1 Deoxyribodipyrimidine photolyase/cryptochrome [Emiliania huxleyi CCMP1516]) HSP 1 Score: 169.1 bits (427), Expect = 2.100e-38 Identity = 93/207 (44.93%), Postives = 128/207 (61.84%), Query Frame = 0
Query: 1 MKYQHVGRDTEGAYAHIKSFCTDAASEGVREVLLVSGSGPKRKLDPAACLERLSKDKQARGSFLSSLRFGVAFNPYLPEME---EEESRFRAKIATGLVSSVWLQLGSDTAALRKGLDFVRIETEGRSPPIRVIGSVVIPSRKFLAMMKFRPWSGVRLSETYLSSVEEANKATKAILNVYKAYGVEPIVESAVKNEADLEQVKNLLG 205
+K+ + RD ++FC +AAS VRE+LLVSGSG R D ACL+ L+ + R + GVAFNP+ P+ E +R R K+ TG VS++WLQ+GSD LR+ L F+ E G P +R+ GSV +PSRK LA +KFRPW+GV LS YLSSVE A+ T +L+ Y +GVEP++ESAV++ A+ + LG
Sbjct: 69 LKFNNDARDPASTLRRFEAFCEEAASLHVREILLVSGSG-SRSFDSLACLKALTLPAERRPAI------GVAFNPFFPDRAARMRERARLRQKLNTGAVSAIWLQIGSDVLLLREALAFLA-ELRGVHPALRLYGSVFLPSRKLLAQLKFRPWNGVFLSAEYLSSVEVASTITCRVLDAYATHGVEPLLESAVRSRAEWRAAREQLG 267
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO06G00140.1 ID=NO06G00140.1|Name=NO06G00140.1|organism=Nannochloropsis oceanica|type=mRNA|length=1527bp CGCTGATGTGGTGTGGAGTGCTTCAATCGCTGATGACTCCCAGCGTGGCG TGCCGGTATGCTCCGTGCTTGTCCAAGCAAATCCCGCCTCTTAGACACAC GCGCGAGCACATGGGGTCTAAGACAAGGCGGTGAAGAAGACGCTCGACGT ATTTGGTTACGGCTGTGTGCGGGCGAATATACCCTTTAAGAACCTCCTCA CCCCCGCCCTCCCTCTCCCTCCCCTCCTTCCTTCCTTCCCATTTAAGCAA CAGCCCTGCCCAGCAGCACAGATGCGTCTCGAACTCTTCTTCAAAACAGC CTCGGAGCTGCAAACTCTTATTGCCCTGGTCCAAGGCGCAAACATCGGTG CTGTCAATCTTGTCAACAAGAGCAAGACAGACCCGTTACTGCAATACGTG CGGACACTCAAGGTGAGAAGGTCCGGGTGTAATGAAAGGAAGCAAAGGAT ACGAGGGGATAAGGAGGGAAGATAGGAGTATGGAGTGCCTGGGCATGCAT CCTCACGCGCACCTAACTCGCTTAATGTCTCACCTTTCGTCGCCTGCAAC AACAGAGCGCCTTCCCCGCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCC TCCTCCTCCTCCTCGCCCTTGGACATCGTTCCGCATTTCTCTATGAAATA TCAACACGTCGGTAGAGACACCGAGGGGGCCTACGCACACATCAAGTCGT TCTGTACCGATGCCGCCTCCGAGGGAGTGAGGGAAGTCCTCCTTGTCTCT GGGAGTGGACCCAAAAGAAAACTCGACCCGGCGGCGTGCCTGGAGCGCCT GTCCAAGGACAAGCAAGCCCGGGGCTCCTTCCTCTCCTCCCTTCGCTTTG GAGTGGCCTTCAACCCGTACCTACCTGAGATGGAAGAGGAGGAGAGCCGT TTTCGAGCCAAAATAGCCACGGGCCTGGTGTCTTCAGTGTGGCTGCAGCT CGGGAGCGACACCGCCGCCCTCAGGAAAGGCCTGGATTTTGTGCGGATCG AAACGGAGGGGAGGAGTCCGCCCATCCGTGTCATCGGCTCCGTCGTCATC CCCTCCAGAAAGTTCCTGGCCATGATGAAATTTCGACCCTGGAGCGGTGT GCGTTTAAGTGAGACGTATCTCTCGTCAGTGGAGGAAGCGAATAAAGCCA CCAAAGCCATTCTCAATGTCTACAAGGCATACGGAGTGGAGCCTATCGTA GAGAGTGCCGTTAAAAACGAGGCGGATCTCGAGCAAGTGAAGAATCTGCT CGGCGACTTGTACGGCTCCTCTCCAACAAGCAGCAGCAGCAGCAGTAAAT CCGTAGGGGTCAGAAGAGGAGTAGGGGCAGCGGCACTCGGAGCAGCAATA GCAGGAGGAGGGAGGGAGGGAGGGAGAGAGAGAGGGATGGAGGGAGGGAG GGCAACGCGTACTCTTCACTCCGCCTTTCCTGCTACACCGACGACAGAGG CCGGTCAAAAAAGGGCGCGAAACGTTTCAGGAGGGGGGGAGGGAGGAAGG GAGGGAGGGAGGGGGAAGGAAAGATAG back to topprotein sequence of NO06G00140.1 >NO06G00140.1-protein ID=NO06G00140.1-protein|Name=NO06G00140.1|organism=Nannochloropsis oceanica|type=polypeptide|length=295bp MKYQHVGRDTEGAYAHIKSFCTDAASEGVREVLLVSGSGPKRKLDPAACL ERLSKDKQARGSFLSSLRFGVAFNPYLPEMEEEESRFRAKIATGLVSSVW LQLGSDTAALRKGLDFVRIETEGRSPPIRVIGSVVIPSRKFLAMMKFRPW SGVRLSETYLSSVEEANKATKAILNVYKAYGVEPIVESAVKNEADLEQVK NLLGDLYGSSPTSSSSSSKSVGVRRGVGAAALGAAIAGGGREGGRERGME GGRATRTLHSAFPATPTTEAGQKRARNVSGGGEGGREGGRGKER* back to topmRNA from alignment at chr6:61344..63939+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO06G00140.1 ID=NO06G00140.1|Name=NO06G00140.1|organism=Nannochloropsis oceanica|type=mRNA|length=2596bp|location=Sequence derived from alignment at chr6:61344..63939+ (Nannochloropsis oceanica) CGCTGATGTGGTGTGGAGTGCTTCAATCGCTGATGACTCCCAGCGTGGCG
TGCCGGTATGCTCCGTGCTTGTCCAAGCAAATCCCGCCTCTTAGACACAC
GCGCGAGCACATGGGGTCTAAGACAAGGCGGTGAAGAAGACGCTCGACGT
ATTTGGTTACGGCTGTGTGCGGGCGAATATACCCTTTAAGAACCTCCTCA
CCCCCGCCCTCCCTCTCCCTCCCCTCCTTCCTTCCTTCCCATTTAAGCAA
CAGCCCTGCCCAGCAGCACAGATGCGTCTCGAACTCTTCTTCAAAACAGC
CTCGGAGCTGCAAACTCTTATTGCCCTGGTCCAAGGCGCAAACATCGGTG
CTGTCAATCTTGTCAACAAGAGCAAGACAGACCCGTTACTGCAATACGTG
CGGACACTCAAGGTGAGAAGGTCCGGGTGTAATGAAAGGAAGCAAAGGAT
ACGAGGGGATAAGGAGGGAAGATAGGAGTATGGAGTGCCTGGGCATGCAT
CCTCACGCGCACCTAACTCGCTTAATGTCTCACCTTTCGTCGCCTGCAAC
AACAGAGCGCCTTCCCCGCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCC
TCCTCCTCCTCCTCGCCCTTGGACATCGTTCCGCATTTCTCTATGAAATA
TCAACACGTCGGTAGAGACACCGAGGGGGCCTACGCACACATCAAGGTGC
GTTTGGCCCGCGTTTCCTCCCTGGAGTGTTTCTCTCATCCCTGCTCCATA
TCCCCGAATCAGCTCCAAATTACTCATCCTCCCTCCCTCCCTCCTTCCCT
CCGAATCTCCCTCATCTCCCTAGTCGTTCTGTACCGATGCCGCCTCCGAG
GGAGTGAGGGAAGTCCTCCTTGTCTCTGGGAGTGGACCCAAAAGAAAACT
CGACCCGGCGGCGTGCCTGGAGCGGTACGTGCCCTTCCTTCCCTCCCTCC
CTTCCTCCCTCCCTCGTCCTCCCTTCCCCCCTTCCATCCTCCCTAGCCCC
TCGTCCATGTCACTTGTCATCCACACTCGCCATTGGCCTTCCTTCCCTCC
CTTCTGCCTGCCCTCCCTCCCTCCCTCCCTGCATAGCCTGTCCAAGGACA
AGCAAGCCCGGGGCTCCTTCCTCTCCTCCCTTCGCTTTGGAGTGGCCTTC
AACCCGTACCTACCTGAGATGGAAGAGGAGGAGAGCCGTTTTCGAGGTAG
GTAGGGAGGGAGGGAGGGAAAGAGGGAGGGAGGAAAGGGGATCACAGTCG
ATGCATCACCTGAGCCTGAAAACACCTCCCTCCCTCCCCCCACCCCTCCC
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCAGCCAAA
ATAGCCACGGGCCTGGTGTCTTCAGTGTGGCTGCAGCTCGGGAGCGACAC
CGCCGCCCTCAGGAAAGGCCTGGATTTTGTGCGGATCGAAACGGAGGGGA
GGAGGTGAGAGAGGGAGGGAGGGAGGGAGGGAGGGTAGTGAGGCTCATGA
CATATATTAGCGGTCTTGCTACACGTATCGTTTTTCCAACTCTCCCTCCC
TTCCTCCCTCCCTCCTTCTTCCCCTCCCTCTCTCATTCCCTCCCTCAGTC
CGCCCATCCGTGTCATCGGCTCCGTCGTCATCCCCTCCAGAAAGTTCCTG
GCCATGGTGCGTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTCCTTC
CTCCTTCCCTCTCTCCTCCCTTTTTCCCTTCCCTCCATCCCTCCCTGTTT
CCCTCACCTCCCCTCCTCCCTCCTTCCCTCCCATCCTCCCTCCCTCACCT
CCTCCCTTCATCAGATGAAATTTCGACCCTGGAGCGGTGTGCGTTTAAGT
GAGACGTATCTCTCGTCAGTGGAGGAAGCGAATAAAGCCACCAAAGCCAT
TCTCAATGTCTACAAGGCATACGGAGGTCCGTCCCCGCCCTTCCTTCCTC
CCTCCCTCCCTCCCTCCCCCTCTCACTCCTTCCCTCCCTCCGGTCAATTT
TTTATTGCATCTGACATCTGCCTGCCTTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCAGTGGAGCCTATCGTAGAGAGTGCCG
TTAAAAACGAGGCGGATCTCGAGCAAGTGAAGAATCTGCTCGGCGACTTG
TACGGGTGAGGGAGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGG
AGGGATATGGAGGCAGGCAGGCAGGGAGGGATATGGAGGGAGGGAGGGAG
GGAGGGAGGTATAATCAGGGAGGGAGGGAGGTATAATCGGAAACCGACTC
GCTTGTTATGCTCTTACCTCTCGTTCCTTTCCAGCTCCTCTCCAACAAGC
AGCAGCAGCAGCAGTAAATCCGTAGGGGTCAGAAGAGGAGTAGGGGCAGC
GGCACTCGGAGCAGCAATAGCAGGAGGAGGGAGGGAGGGAGGGAGAGAGA
GAGGGATGGAGGGAGGGAGGGCAACGCGTACTCTTCACTCCGCCTTTCCT
GCTACACCGACGACAGAGGCCGGTCAAAAAAGGGCGCGAAACGTTTCAGG
AGGGGGGGAGGGAGGAAGGGAGGGAGGGAGGGGGAAGGAAAGATAG back to topCoding sequence (CDS) from alignment at chr6:61344..63939+ >NO06G00140.1 ID=NO06G00140.1|Name=NO06G00140.1|organism=Nannochloropsis oceanica|type=CDS|length=885bp|location=Sequence derived from alignment at chr6:61344..63939+ (Nannochloropsis oceanica) ATGAAATATCAACACGTCGGTAGAGACACCGAGGGGGCCTACGCACACAT CAAGTCGTTCTGTACCGATGCCGCCTCCGAGGGAGTGAGGGAAGTCCTCC TTGTCTCTGGGAGTGGACCCAAAAGAAAACTCGACCCGGCGGCGTGCCTG GAGCGCCTGTCCAAGGACAAGCAAGCCCGGGGCTCCTTCCTCTCCTCCCT TCGCTTTGGAGTGGCCTTCAACCCGTACCTACCTGAGATGGAAGAGGAGG AGAGCCGTTTTCGAGCCAAAATAGCCACGGGCCTGGTGTCTTCAGTGTGG CTGCAGCTCGGGAGCGACACCGCCGCCCTCAGGAAAGGCCTGGATTTTGT GCGGATCGAAACGGAGGGGAGGAGTCCGCCCATCCGTGTCATCGGCTCCG TCGTCATCCCCTCCAGAAAGTTCCTGGCCATGATGAAATTTCGACCCTGG AGCGGTGTGCGTTTAAGTGAGACGTATCTCTCGTCAGTGGAGGAAGCGAA TAAAGCCACCAAAGCCATTCTCAATGTCTACAAGGCATACGGAGTGGAGC CTATCGTAGAGAGTGCCGTTAAAAACGAGGCGGATCTCGAGCAAGTGAAG AATCTGCTCGGCGACTTGTACGGCTCCTCTCCAACAAGCAGCAGCAGCAG CAGTAAATCCGTAGGGGTCAGAAGAGGAGTAGGGGCAGCGGCACTCGGAG CAGCAATAGCAGGAGGAGGGAGGGAGGGAGGGAGAGAGAGAGGGATGGAG GGAGGGAGGGCAACGCGTACTCTTCACTCCGCCTTTCCTGCTACACCGAC GACAGAGGCCGGTCAAAAAAGGGCGCGAAACGTTTCAGGAGGGGGGGAGG GAGGAAGGGAGGGAGGGAGGGGGAAGGAAAGATAG back to top
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