NO06G00060.2, NO06G00060.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G00060.2
Unique NameNO06G00060.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3169
Alignment locationchr6:34488..38082 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:34488..38082 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO06G00060.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G00060NO06G00060Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G00060.2NO06G00060.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G00060.2.cds1NO06G00060.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G00060.2.cds2NO06G00060.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G00060.2.cds3NO06G00060.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G00060.2 ID=NO06G00060.2|Name=NO06G00060.2|organism=Nannochloropsis oceanica|type=mRNA|length=3169bp
CTCACATTTGTTGTCTTTCCTTTCGATTATTGTTCTCATTGTCTCCGTTG
CTGTGACGTCACGATTTTTTATGTTCTTCACAGAACTCTCTACCTTTTGG
TGGCTTCTTCCGGCGCACGTGCGTTGGGGATACTCGTCGTCCCTGATCAA
TCACGTGATCACCATGTAGACACTTTCTTTCTCGTGCTGCTGGCATTTCG
CACTGCTATCGGTGGCCATTGTTCAGCAGGATTATGGTGCTCGCGTAAAA
ATTATCCCCCACCAAGAAAAAGATGCACGACGTCACGATAACAGTCGTCA
GCTAAAAGAAGTGCTCTTCTTCGCCGTGCGCGTTGCCATGGAACATTTGC
CGCGTTTCTGGGCTAGACAGGGTGTATGATGCACAGAGGAGTGTGTTAGC
TTTTCACTTCACCACATTGACCGCACATAGGAAAATCTGCCTGGAGATTA
AATGCAGCACTTTCCAGAGCCACTCCCCGCGCCCACTTCGCCTCAAGCGC
TGATGCATCGCCTGCTCAAGCGCCTTGGGGCATCTTCCACAACAGCTCCT
GCGGACACAGACTCTGCCAAAGACACCTTGGACTCAGTGGCAACGGTGCA
CGAACATCGAACCAAGCTCCACGTGCCGATCGAAAAGACGCTTTTCCTCT
CCAGATTCTGGCACCTGTCCCGCAGCAGTTGTTCTACCCCGATCAGGCGA
TATGGTAATCCAGAAGGGCGTGGTTGCAGCGAGATCACGCTAGAAGAAGA
CGAAGAGCTCCAAAAAGGCGGCATCAGCGCCATGTCCCAAGAGGAGGCCG
ACAAGAAGGAGCTTGGGAATGGGATGGATAAGTGGATTGGGGAGAAACAA
TCTGCACGGCGGATCACTTTACGTTTATTGGGTTCAGGGCCCCGTCTTTA
TGCAGTCGCGGGCCTCATCAAAGTCCCTGTCTATGCGCTCTCCCTTTACG
CCGAAGCCTCCGAAGCACAAGCCCGTCTTCTGTCTACCCTCCCTCCCACC
TTCGACTTTTCTTCACTTCCTCCCCCTTCTTACTATAATGCCCTCCTTTC
TTCCTCCTCCTCTACTTCCTCGGCTCCCTGGCCTCGAGCCCTCTACCTCA
CTTTCTGCCGCTCCGTCGGCACTAAGCGCGTCTTGGACGCATTTCAGCCT
TACCCTCATCTGGCTGCCATTTTCCTGCCTTCCATCGAAGCGTCATTCAA
AGACGCGTTTGGAGGGGCCGGAATCCAGGCCGGGGATTCGGTCGGATTTG
TGTGGCTGGAGGGCGAAGGGCTCCTGACAGTGGTAAGTGTTTTTTTTTAA
AAAAGAGCGATCCTCATACAGTGCACGCCGAGTCGATCCTGATTCCACTC
TGCCCTCCCTTTTCACCCTCTTCTTTTTGCTGTCGTCACTTGCCCCTTTT
CATACTCCGTAGATCAATGGCCGCGTCGTCGACCTCATGGAAGATGAACA
GCTTATTCCTGATATCTTCTCCGTCTGGTTGGGCGAAACACCTGTGAGTG
TTGAGGCGAAAGCTAGGATGACAAATCAAGCTCATTGGTTGAGGGGAGAG
ACGGCATAAGGAAAGTAGAAAAGGATGCTGGTGGAAAGGGAAGATGAAGC
GCAAAGAGTCCTCTCGGGGAAGACGCACGACAGACTTCGCTGGCTTTGTG
AGACAGAATAGGAAATGTGGCAATCGCGATTCAAATCGGGGAAAGACATT
CGGCGGCGTGAGCGGGGTACGATGTTTAGCCTTTCCTCTGCAAAGCAGCG
TTGAGATAAATATGTAAGCAAAGCATTATAATATTTAAATCAAGGGAGAT
ACCTTGTTTCAGTATTCTACACAATGTGGAATTAGGAAATTTATGATTTT
GTGATTGAGAATCACATAAGAAATTGGCGGATGGAATGTCTTTGCGGATT
AGAAAGCGGGAATGGGGAAGGAGGCGAGAAAGAGACGGCAGTATTAGCAA
GCAAATGCTCAACGAAGGAGCTGATTTCATATAAACAAAGATACCCACAC
ATGATCGCATGAAAGAAAGCAAGACAGAATCCGTCCAATCATTCCGTGTC
TAGTTTTTATGTATGGGTGCATGGGGCTTGCTTGACTCTCCATTGCCTTC
CTACTGAGACCCAGGCACGTGTGGGGCGGAGGGACGAGCTATAATTGCTC
TATTCTATTCACTCTGCGTCTGATCTCTCCTTGTGTCACACTCTGCTTTA
CCTGTCTATCCGACTACCTCAATAGATTTTATCTTTTTCATATACTCATG
GTTTCTTCGTATTTTGACATGGACATCAACCATCCAGAAAAATCCACTTT
CGATCCTGCATTCGCTGCCTTCATCACTAATTCCACAGTCCTGCCAGATC
ACGACCGGCGACAATCTCCAACAAAGGGCTTTCTATCGGTAGTGCTGGTA
CCCCTGCGGCGCCTGAGCCGTCATCCATGCCCCTCCTGCTGCCGGTGCTC
CAAGTTGTGGCTGTTGCTGCTGTTGTTGCAACTGTCCTTGTTGTTGTTCC
TCCGATGCGCCAGGGTAGGTACCATACATCTGAGGGTGCTGCAGTTGCTG
CTGCTGCCCTCCCTGCGCCCCGCCCTGCTGCGGGTAGGTAGAAGGGAAGC
TTCCATACATCGAGGATGAGGAGGGTTCAGAGGCTGAGGGAGGCAGTGCC
TGCGCATAGGATAAGGGGGCGGAGGGAGGGCCGGAGGGAGGAAGAGGATA
TCCGCCATAGGCATACCCGCCCGACTGCTGCTGCTGCTGCTGAGGAGGAG
GAGGAGGAAGAGGAGGAAGGACAGGAGAATACGAGGCAGCGGCGCCGAAC
CCGTAGGAGGAGGTAGAGGAGGAAGGAGGGGCTTGGGAGTATTGGGATGG
GGCTGAGGAGGAAAGTGGAAAGGAAGGAGGGATGGAGGGAGGAAAATAGT
CTCCCGAGCGCTGCAGCTGCTGTCCTTGCTGCTCAGACGGCGCCTGCGAG
TAGGGAGAGGACGCGGAAGACGAGGAAGAAGGGGGATGGCCGGGGGGAGG
GTGGTAGCCTCCTCCTTGCCCTCTTTGTTGATGCTGTTGCTGCTGCTGCT
GCTGCCGAAAGGGCGCTTGACTGTATGGTAGAGGAGCAGCCACAGCAGCC
GACGACGAGCCGCCAGAGGGAGGAAGAGATCCAGGCGACTGCTGATGCTG
CTGGTGCTGCTGGTGCTGC
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protein sequence of NO06G00060.2

>NO06G00060.2-protein ID=NO06G00060.2-protein|Name=NO06G00060.2|organism=Nannochloropsis oceanica|type=polypeptide|length=283bp
MQHFPEPLPAPTSPQALMHRLLKRLGASSTTAPADTDSAKDTLDSVATVH
EHRTKLHVPIEKTLFLSRFWHLSRSSCSTPIRRYGNPEGRGCSEITLEED
EELQKGGISAMSQEEADKKELGNGMDKWIGEKQSARRITLRLLGSGPRLY
AVAGLIKVPVYALSLYAEASEAQARLLSTLPPTFDFSSLPPPSYYNALLS
SSSSTSSAPWPRALYLTFCRSVGTKRVLDAFQPYPHLAAIFLPSIEASFK
DAFGGAGIQAGDSVGFVWLEGEGLLTVVSVFF*
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mRNA from alignment at chr6:34488..38082-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G00060.2 ID=NO06G00060.2|Name=NO06G00060.2|organism=Nannochloropsis oceanica|type=mRNA|length=3595bp|location=Sequence derived from alignment at chr6:34488..38082- (Nannochloropsis oceanica)
CTCACATTTGTTGTCTTTCCTTTCGATTATTGTTCTCATTGTCTCCGTTG CTGTGACGTCACGATTTTTTATGTTCTTCACAGAACTCTCTACCTTTTGG TGGCTTCTTCCGGCGCACGTGCGTTGGGGATACTCGTCGTCCCTGATCAA TCACGTGATCACCATGTAGACACTTTCTTTCTCGTGCTGCTGGCATTTCG CACTGCTATCGGTGGCCATTGTTCAGCAGGATTATGGTGCTCGCGTAAAA ATTATCCCCCACCAAGAAAAAGATGCACGACGTCACGATAACAGTCGTCA GCTAAAAGAAGTGCTCTTCTTCGCCGTGCGCGTTGCCATGGAACATTTGC CGCGTTTCTGGGCTAGACAGGGTGTATGATGCACAGAGGAGTGTGTTAGC TTTTCACTTCACCACATTGACCGCACATAGGAAAATCTGCCTGGAGATTA AATGCAGCACTTTCCAGAGCCACTCCCCGCGCCCACTTCGCCTCAAGCGC TGATGCATCGCCTGCTCAAGCGCCTTGGGGCATCTTCCACAACAGCTCCT GCGGACACAGACTCTGCCAAAGACACCTTGGACTCAGGTATTGAGACGGA AAAAGTGTTTGGGGGGGATGACTCAGAGAGGGGCAAGAAAGAGGCAAAAC GGAGGCGGGCATGGCGCATAAAAGACCGCGCTGCTCTCTACCCACTCTAA CTCGCACCAAACCACAGTGGCAACGGTGCACGAACATCGAACCAAGCTCC ACGTGCCGATCGAAAAGACGCTTTTCCTCTCCAGGTACGTACATGTCCTT TCGTGTGGCCATCCCCGTCTCTTCCTCCCCTTATCTCCACCCCCAGATAT GTTTAGAGCTCATCATAGAACGATCCCCTTCCCTTCACCGTTTGGGTCTC TTTCCAACAAGACGTCCTTCAATCATTTTACGCGCCAAAAATCTTCATCC TTCACCGGTCCCTTTGTGAAACCCATCTCATCCCCTACTCGTATGGGTGA CTGTCAATCTTATCCGCAGTCTCTCCCTCTTACCCTCCACTCCCTTTCTA CTCCCTGTCTTCGTTTCCTTCCATCTACAGATTCTGGCACCTGTCCCGCA GCAGTTGTTCTACCCCGATCAGGCGATATGGTAATCCAGAAGGGCGTGGT TGCAGCGAGATCACGCTAGAAGAAGACGAAGAGCTCCAAAAAGGCGGCAT CAGCGCCATGTCCCAAGAGGAGGCCGACAAGAAGGAGCTTGGGAATGGGA TGGATAAGTGGATTGGGGAGAAACAATCTGCACGGCGGATCACTTTACGT TTATTGGGTTCAGGGCCCCGTCTTTATGCAGTCGCGGGCCTCATCAAAGT CCCTGTCTATGCGCTCTCCCTTTACGCCGAAGCCTCCGAAGCACAAGCCC GTCTTCTGTCTACCCTCCCTCCCACCTTCGACTTTTCTTCACTTCCTCCC CCTTCTTACTATAATGCCCTCCTTTCTTCCTCCTCCTCTACTTCCTCGGC TCCCTGGCCTCGAGCCCTCTACCTCACTTTCTGCCGCTCCGTCGGCACTA AGCGCGTCTTGGACGCATTTCAGCCTTACCCTCATCTGGCTGCCATTTTC CTGCCTTCCATCGAAGCGTCATTCAAAGACGCGTTTGGAGGGGCCGGAAT CCAGGCCGGGGATTCGGTCGGATTTGTGTGGCTGGAGGGCGAAGGGCTCC TGACAGTGGTAAGTGTTTTTTTTTAAAAAAGAGCGATCCTCATACAGTGC ACGCCGAGTCGATCCTGATTCCACTCTGCCCTCCCTTTTCACCCTCTTCT TTTTGCTGTCGTCACTTGCCCCTTTTCATACTCCGTAGATCAATGGCCGC GTCGTCGACCTCATGGAAGATGAACAGCTTATTCCTGATATCTTCTCCGT CTGGTTGGGCGAAACACCTGTGAGTGTTGAGGCGAAAGCTAGGATGACAA ATCAAGCTCATTGGTTGAGGGGAGAGACGGCATAAGGAAAGTAGAAAAGG ATGCTGGTGGAAAGGGAAGATGAAGCGCAAAGAGTCCTCTCGGGGAAGAC GCACGACAGACTTCGCTGGCTTTGTGAGACAGAATAGGAAATGTGGCAAT CGCGATTCAAATCGGGGAAAGACATTCGGCGGCGTGAGCGGGGTACGATG TTTAGCCTTTCCTCTGCAAAGCAGCGTTGAGATAAATATGTAAGCAAAGC ATTATAATATTTAAATCAAGGGAGATACCTTGTTTCAGTATTCTACACAA TGTGGAATTAGGAAATTTATGATTTTGTGATTGAGAATCACATAAGAAAT TGGCGGATGGAATGTCTTTGCGGATTAGAAAGCGGGAATGGGGAAGGAGG CGAGAAAGAGACGGCAGTATTAGCAAGCAAATGCTCAACGAAGGAGCTGA TTTCATATAAACAAAGATACCCACACATGATCGCATGAAAGAAAGCAAGA CAGAATCCGTCCAATCATTCCGTGTCTAGTTTTTATGTATGGGTGCATGG GGCTTGCTTGACTCTCCATTGCCTTCCTACTGAGACCCAGGCACGTGTGG GGCGGAGGGACGAGCTATAATTGCTCTATTCTATTCACTCTGCGTCTGAT CTCTCCTTGTGTCACACTCTGCTTTACCTGTCTATCCGACTACCTCAATA GATTTTATCTTTTTCATATACTCATGGTTTCTTCGTATTTTGACATGGAC ATCAACCATCCAGAAAAATCCACTTTCGATCCTGCATTCGCTGCCTTCAT CACTAATTCCACAGTCCTGCCAGATCACGACCGGCGACAATCTCCAACAA AGGGCTTTCTATCGGTAGTGCTGGTACCCCTGCGGCGCCTGAGCCGTCAT CCATGCCCCTCCTGCTGCCGGTGCTCCAAGTTGTGGCTGTTGCTGCTGTT GTTGCAACTGTCCTTGTTGTTGTTCCTCCGATGCGCCAGGGTAGGTACCA TACATCTGAGGGTGCTGCAGTTGCTGCTGCTGCCCTCCCTGCGCCCCGCC CTGCTGCGGGTAGGTAGAAGGGAAGCTTCCATACATCGAGGATGAGGAGG GTTCAGAGGCTGAGGGAGGCAGTGCCTGCGCATAGGATAAGGGGGCGGAG GGAGGGCCGGAGGGAGGAAGAGGATATCCGCCATAGGCATACCCGCCCGA CTGCTGCTGCTGCTGCTGAGGAGGAGGAGGAGGAAGAGGAGGAAGGACAG GAGAATACGAGGCAGCGGCGCCGAACCCGTAGGAGGAGGTAGAGGAGGAA GGAGGGGCTTGGGAGTATTGGGATGGGGCTGAGGAGGAAAGTGGAAAGGA AGGAGGGATGGAGGGAGGAAAATAGTCTCCCGAGCGCTGCAGCTGCTGTC CTTGCTGCTCAGACGGCGCCTGCGAGTAGGGAGAGGACGCGGAAGACGAG GAAGAAGGGGGATGGCCGGGGGGAGGGTGGTAGCCTCCTCCTTGCCCTCT TTGTTGATGCTGTTGCTGCTGCTGCTGCTGCCGAAAGGGCGCTTGACTGT ATGGTAGAGGAGCAGCCACAGCAGCCGACGACGAGCCGCCAGAGGGAGGA AGAGATCCAGGCGACTGCTGATGCTGCTGGTGCTGCTGGTGCTGC
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Coding sequence (CDS) from alignment at chr6:34488..38082-

>NO06G00060.2 ID=NO06G00060.2|Name=NO06G00060.2|organism=Nannochloropsis oceanica|type=CDS|length=849bp|location=Sequence derived from alignment at chr6:34488..38082- (Nannochloropsis oceanica)
ATGCAGCACTTTCCAGAGCCACTCCCCGCGCCCACTTCGCCTCAAGCGCT
GATGCATCGCCTGCTCAAGCGCCTTGGGGCATCTTCCACAACAGCTCCTG
CGGACACAGACTCTGCCAAAGACACCTTGGACTCAGTGGCAACGGTGCAC
GAACATCGAACCAAGCTCCACGTGCCGATCGAAAAGACGCTTTTCCTCTC
CAGATTCTGGCACCTGTCCCGCAGCAGTTGTTCTACCCCGATCAGGCGAT
ATGGTAATCCAGAAGGGCGTGGTTGCAGCGAGATCACGCTAGAAGAAGAC
GAAGAGCTCCAAAAAGGCGGCATCAGCGCCATGTCCCAAGAGGAGGCCGA
CAAGAAGGAGCTTGGGAATGGGATGGATAAGTGGATTGGGGAGAAACAAT
CTGCACGGCGGATCACTTTACGTTTATTGGGTTCAGGGCCCCGTCTTTAT
GCAGTCGCGGGCCTCATCAAAGTCCCTGTCTATGCGCTCTCCCTTTACGC
CGAAGCCTCCGAAGCACAAGCCCGTCTTCTGTCTACCCTCCCTCCCACCT
TCGACTTTTCTTCACTTCCTCCCCCTTCTTACTATAATGCCCTCCTTTCT
TCCTCCTCCTCTACTTCCTCGGCTCCCTGGCCTCGAGCCCTCTACCTCAC
TTTCTGCCGCTCCGTCGGCACTAAGCGCGTCTTGGACGCATTTCAGCCTT
ACCCTCATCTGGCTGCCATTTTCCTGCCTTCCATCGAAGCGTCATTCAAA
GACGCGTTTGGAGGGGCCGGAATCCAGGCCGGGGATTCGGTCGGATTTGT
GTGGCTGGAGGGCGAAGGGCTCCTGACAGTGGTAAGTGTTTTTTTTTAA
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Synonyms
Publications