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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr6 | genome | chr6:17041..21135 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO06G00040.1 vs.
Match: OVA01759.1 (Peptidase S10 [Macleaya cordata]) HSP 1 Score: 142.5 bits (358), Expect = 4.600e-30 Identity = 64/166 (38.55%), Postives = 109/166 (65.66%), Query Frame = 0
Query: 212 QSGLLPV--TRNSSLFYWYCPPSGPASRPPLSTNSTPLILWLQGGPGASGLIGLLYEMGPYRLEKDNASSSFSLVDRTVGAWSESYGMLFVDSPVGTGFSEVGGPDAYSRTEEDVAENLYVFLQGFYAMYPELLDGGLYIMGESYAGHYIPSLATYLLRRNDDIPL 376
+SG LP+ T S++F+ + P S S + TP+++WLQGGPG S +IG +E+GP+R+ D+ S+ S++ GAW+E +G++F+D+P+GTGFS P+ + +E VA++L++ L+ F ++ P +YI GESYAG Y+P++ Y+L++N +P+
Sbjct: 36 KSGYLPINSTSGSAIFFAFYEAQHPIS----SISQTPILVWLQGGPGCSSMIGNFFELGPWRVSSDSNSNQSSILKPNPGAWNEKFGLVFIDNPIGTGFSIASTPEEIPKDQETVAKHLFIALRSFISLDPLSNSRPIYITGESYAGKYVPAIGYYILQKNSRLPV 197
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO06G00040.1 ID=NO06G00040.1|Name=NO06G00040.1|organism=Nannochloropsis oceanica|type=mRNA|length=2641bp GTGAAGAGCACGCTCAAGAGGCCTATGTTAGATGCAGGGGGAACAGGGGA ACAGAGGGCGTGAGAAGGAAGGAGCTACGAGTGATTTGACTCTTTTTTGG TTTCTCAGCCCGTCAAACAATGCCAGTCACGGAAGAGCGATAATGTGCCT TTACGTAGTATATGCTAAAGATCAGCGCACATGCTTGTCGTCAGCGCCGT GCTGGGAGCTGGTCGAAGCGACAACTTGGAGGCGAGGACGAGGACGTGTC AGGGAGGTCGGTCCTGTGCAAGGAGCTAATATTTTTTTGGTAGGATTCTG GACTTGCTTTTCTATGATCTTGCTCCTCGCTTTCCCACTGCATCCTCATA GAAGCGTGGGAGAATGGATATCTTCGCTTATTGGGTATCACAGCGACATC TACATTCCCCAAGGAAAGTGTCAACATGTCCACTGTTTGCGAGGGGTGTC AGAAGAGCCCTTGTGACGCGTGCAACAGCAAAATCGCCTTGTAAGGCCCT CGCCAAAAAACGGGTATGCAGATGCTGTAGGTCACAGCACTTGGGGAAAG GCAACGGTGGTCTCAATTATATACCTTCTGTACAACAAAACTGTGTATAT TCTTTCCGCCCTTGGTTAGTGGGTGTACATGCCACGCACCCCCCTGTACC CCCCCCTGCCTTTTTTTAAACTGGCAGCAGCCCATATCAAGCTCAAGCTC AAGCACATTAATTTGCCCACTCCAACTTCCCCATTCCCCCGCAGGCGTAG GCAAACAAGCCGCGAAAATAGCACGGATGATTCACGGTGTGCCGTGGCTG GGGCCCGCTCTCGCTTGGGCTCTTATTTGAATTTGCTACAGTCAAATCTC CTCAATGCCACACATCATCACCCCCCACGGCCACACTACACAATTTATCT GGGGCCTGAGAAACACGTAGGCCATGAATGCGTTCCAGTGGCCTTGTCAC CTTTGATGTGGTCGCCTCAAAGCTATGCATATGATACTCTGCCTTCTAGA ATCAGTGCTGCGTCTCCCTGCTTCCGATCCTCCCTCCCCCGGGAGTACAG GACCCGCTGCTGCGGCCAGGGGCTTGCAACTCGCACACGATGCAAGCGCA CCGAAGCATGTCTTTTTCAATCCATCTCTGCTATAACTATTCTTATCTCT TCCACCTTTACAACCCCCCAGACACACACACACGCCATGCGTCCGCTCTC CCTCCTCGCCTTTTTGCTCCCCGCCCTCCTCGCCGTCACCAATGGAGTCC CCTCATCCTTCCAGTCGGGCCTCCTCCCCGTCACTCGCAACTCGTCTCTC TTCTACTGGTACTGCCCTCCTTCCGGCCCTGCCTCTCGTCCCCCCCTCTC CACCAACTCCACGCCTCTGATTCTGTGGTTGCAAGGGGGGCCGGGGGCGA GTGGTTTAATTGGGTTGCTCTACGAGATGGGGCCGTACCGACTCGAGAAG GACAATGCTTCTTCTTCCTTCTCCCTTGTCGACCGCACTGTCGGTGCTTG GAGCGAAAGTTATGGGATGCTCTTCGTAGATTCTCCTGTCGGCACGGGCT TCAGCGAGGTGGGAGGACCGGACGCTTACTCTCGCACTGAGGAGGACGTG GCCGAGAATCTCTACGTCTTCTTGCAGGGCTTCTACGCCATGTACCCGGA GCTGCTGGATGGCGGGCTCTACATCATGGGCGAGAGCTATGCGGGCCACT ACATCCCATCCCTCGCTACCTACCTCCTGCGCCGCAATGACGACATTCCT CTCCCCACCTCCTCCCCTACGACCTCCCCCTCTACCTCCCCCTCTACCTC CCCCTCTACCTCCCCCTCTACCTCCCCCATGGCCCCTCCCACCGCCTCCC CCTCTACCTCCCCCTCTACCTCCCCCTCTACCTCCCCTATCGCCCCTCCC ACCGCACTTCCCACCTCATCACCTTTTCCCCCCGTTTCCTCCTCCTCCTT GCATCTGCGTGGTGCAAGTTCTGCGGTGATGCGGGAAGAAAAAAGCGCCT CCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCC TCCTCCTCCTCCCCGGTCTACATTCCTCTCAAGGGTATTGCCATCGGAAA CGGCCTCACCAACCCCGCCCTCCAGGTGATGGCTAAGGCCCGCGTCGCCT ACGACATGGGCTTGCTCAACGGAAAGGAGTTCCTCCAAGCGCGCGCCTAC GCCCTCTATGCAGCCTTGTCGGCCCTCGACGGCGACTACCTGACTGCCCG CGAGTACAGAGGCTTGCTCGAGGACTACATCGCCTCGACCTCCGGTGTGA ACCTCTACGACGCCCGCCTCCTGTCCCCCTACTCCTTCGAACCCGAGATT CAAACATGGGCCAACACCCCCCAGGCCAAGCGGGCCCTGCACTTGCCCCT GAATGCCACGTGGAAGACCAGCGAGGAGGTACAGGCGGATGCTTCTCCAC CATCACTCTTCCCTCCTCTCCTCCCTCCCTCCCTCGGCTTTTGGGGAGTA TGGAGAGTAGCAGGAACACGGGACGGTTTCTTCCTAGTCCCCCCCCTTCC CTTCCTTCTTTCCCGTCGCCTGTGATCCTGGTCAAAGGGGAAAGAAAGGC CACGCTCAAACCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC back to topprotein sequence of NO06G00040.1 >NO06G00040.1-protein ID=NO06G00040.1-protein|Name=NO06G00040.1|organism=Nannochloropsis oceanica|type=polypeptide|length=649bp MPRTPLYPPLPFFKLAAAHIKLKLKHINLPTPTSPFPRRRRQTSRENSTD DSRCAVAGARSRLGSYLNLLQSNLLNATHHHPPRPHYTIYLGPEKHVGHE CVPVALSPLMWSPQSYAYDTLPSRISAASPCFRSSLPREYRTRCCGQGLA TRTRCKRTEACLFQSISAITILISSTFTTPQTHTHAMRPLSLLAFLLPAL LAVTNGVPSSFQSGLLPVTRNSSLFYWYCPPSGPASRPPLSTNSTPLILW LQGGPGASGLIGLLYEMGPYRLEKDNASSSFSLVDRTVGAWSESYGMLFV DSPVGTGFSEVGGPDAYSRTEEDVAENLYVFLQGFYAMYPELLDGGLYIM GESYAGHYIPSLATYLLRRNDDIPLPTSSPTTSPSTSPSTSPSTSPSTSP MAPPTASPSTSPSTSPSTSPIAPPTALPTSSPFPPVSSSSLHLRGASSAV MREEKSASSSSSSSSSSSSSSSSSSSSSPVYIPLKGIAIGNGLTNPALQV MAKARVAYDMGLLNGKEFLQARAYALYAALSALDGDYLTAREYRGLLEDY IASTSGVNLYDARLLSPYSFEPEIQTWANTPQAKRALHLPLNATWKTSEE VQADASPPSLFPPLLPPSLGFWGVWRVAGTRDGFFLVPPLPFLLSRRL* back to topmRNA from alignment at chr6:17041..21135+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO06G00040.1 ID=NO06G00040.1|Name=NO06G00040.1|organism=Nannochloropsis oceanica|type=mRNA|length=4095bp|location=Sequence derived from alignment at chr6:17041..21135+ (Nannochloropsis oceanica) GTGAAGAGCACGCTCAAGAGGCCTATGTTAGATGCAGGGGGAACAGGGGA
ACAGAGGGCGTGAGAAGGAAGGAGCTACGAGTGATTTGACTCTTTTTTGG
TTTCTCAGCCCGTCAAACAATGCCAGTCACGGAAGAGCGATAATGTGCCT
TTACGTAGTATATGCTAAAGATCAGCGCACATGCTTGTCGTCAGCGCCGT
GCTGGGAGCTGGTCGAAGCGACAACTTGGAGGCGAGGACGAGGACGTGTC
AGGGAGGTCGGTCCTGTGCAAGGAGCTAATATTTTTTTGGTAGGATTCTG
GACTTGCTTTTCTATGATCTTGCTCCTCGCTTTCCCACTGCATCCTCATA
GAAGCGTGGGAGAATGGATATCTTCGCTTATTGGGTATCACAGCGACATC
TACATTCCCCAAGGAAAGTGTCAACATGTCCACTGTTTGCGAGGGGTGTC
AGAAGAGCCCTTGTGACGCGTGCAACAGCAAAATCGCCTTGTAAGGCCCT
CGCCAAAAAACGGGTATGCAGATGCTGTAGGTCACAGCACTTGGGGAAAG
GCAACGGTGGTCTCAATTATATACCTTCTGTACAACAAAACTGTGTATAT
TCTTTCCGCCCTTGGTTAGTGGGTGTACATGCCACGCACCCCCCTGTACC
CCCCCCTGCCTTTTTTTAAACTGGCAGCAGCCCATATCAAGCTCAAGCTC
AAGCACATTAATTTGCCCACTCCAACTTCCCCATTCCCCCGCAGGCGTAG
GCAAACAAGCCGCGAAAATAGCACGGATGATTCACGGTGTGCCGTGGCTG
GGGCCCGCTCTCGCTTGGGCTCTTATTTGAATTTGCTACAGTCAAATCTC
CTCAATGCCACACATCATCACCCCCCACGGCCACACTACACAATTTATCT
GGGGCCTGAGAAACACGTAGGCCATGAATGCGTTCCAGTGGCCTTGTCAC
CTTTGATGTGGTCGCCTCAAAGCTATGCATATGATACTCTGCCTTCTAGA
ATCAGTGCTGCGTCTCCCTGCTTCCGATCCTCCCTCCCCCGGGAGTACAG
GACCCGCTGCTGCGGCCAGGGGCTTGCAACTCGCACACGATGCAAGCGCA
CCGAAGCATGTCTTTTTCAATCCATCTCTGCTATAACTATTCTTATCTCT
TCCACCTTTACAACCCCCCAGACACACACACACGCCATGCGTCCGCTCTC
CCTCCTCGCCTTTTTGCTCCCCGCCCTCCTCGCCGTCACCAATGGAGTCC
CCTCATCCTTCCAGTCGGGCCTCCTCCCCGTCACTCGCAACTCGTCTCTC
TTCTACTGGTACTGCCCTCCTTCCGGCCCTGCCTCTCGTCCCCCCCTCTC
CACCAACTCCACGCCTCTGATTCTGTGGTTGCAAGGGGGGCCGGGGGCGA
GTGGTTTAATTGGGTTGCTCTACGAGATGGGGCCGTACCGACTCGAGAAG
GTGATGAGGGATAGGGAGAACGCGGATGAGGGAATGGGAGCTTTTCTCGC
GGGGGCAGGGGAGGGGATGGAGGAATGGGAAAAAGTCATAATGAAATTCT
CACGCCGCGTTTACCACATAGGACAATGCTTCTTCTTCCTTCTCCCTTGT
CGACCGCACTGTCGGTGCTTGGAGCGAAAGTTATGGTCTGTATGACATCT
CTCTATATATATGTACATGACTTTATTGTCGTTTCTACTTGTGTCTAGCC
GCGCGCCTCCCTTCCTGCCTTGTTCCTGTCCATTACTGATTCCCTTCTTC
CCTCCCTCTCTCCCTCCCTCTCCCCCTCCTTCTTGCGTGTCCAGGGATGC
TCTTCGTAGATTCTCCTGTCGGCACGGGCTTCAGCGAGGTGGGAGGACCG
GACGCTTACTCTCGCACTGTAAGGAGCGAGAAAGGGAGGGAAAGAGGGAG
GGAGAAAGGGAGGGAGGGAGGAGACGATACCGGCTGCTCATCTCACGCAC
ATCTCACCACTAGGAGGAGGACGTGGCCGAGAATCTCTACGTCTTCTTGC
AGGGGTAGGTCTAGGGGGGAGGGAGGCAGGGAGGGAGGGAGGTGAAGAGG
AGGGTAAATGCACCCGTCTCTCCTGTAGAGCACAATCACAAGAAATTCAA
GCGTCTCCCCATTCACTGTCCGCTGTCTGCTTCCCTCACTCCCTTCCTCC
CTTCCTCCCTCCTCCCTCTTTCTCTCCCACCCTCCATCCCGCCTCGCAGC
TTCTACGCCATGTACCCGGAGCTGCTGGATGGCGGGCTCTACATCATGGG
CGAGAGGTGAAGGAGGGACGGAGGGGGGACGGAGGAGGGACGGAGGCAGA
ATAGGATGCAAGACAGGAGGAGACCGACAGACACACATTACCTGGAATCA
TGTTTCCTTCTCGCCCTCATCTCATCACCCCTTCTATCTGCCCTTTCTCC
TTCCCTCCCTCCCTCTTTCCCCCCCTCCCTCCCTCCCAGCTATGCGGGCC
ACTACATCCCATCCCTCGCTACCTACCTCCTGCGCCGCAATGACGACATT
CCTCTCCCCACCTCCTCCCCTACGACCTCCCCCTCTACCTCCCCCTCTAC
CTCCCCCTCTACCTCCCCCTCTACCTCCCCCATGGCCCCTCCCACCGCCT
CCCCCTCTACCTCCCCCTCTACCTCCCCCTCTACCTCCCCTATCGCCCCT
CCCACCGCACTTCCCACCTCATCACCTTTTCCCCCCGTTTCCTCCTCCTC
CTTGCATCTGCGTGGTGCAAGTTCTGCGGTGATGCGGGAAGAAAAAAGGT
GCGTCGTCTGTGTGTCTTTTGTGAGGCTGTGGAGGGAGAAAGAGCGAAAA
ACATCCATTAAGTGAGGCCTTCCACTGTATGTACACAATACACACACACA
CACACACACACACACACACTCACACACACACACACACACACACTCACACA
CACACACACACACACACACACACACACACACACACACACCACACACACAC
ACACACACACACACACACACACACACACACACACACACACACATGTGCAT
TTACAATGCTAACCATGTGATACTCTCCCCCTTCCCATTGTCCTCATACC
AGCGCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTC
CTCCTCCTCCTCCTCCTCCCCGGTCTACATTCCTCTCAAGGGTATTGCCA
TCGGAAACGGCCTCACCAACCCCGCCCTCCAGGTCTGCCATTTCCCCCTT
CCTTCCTCCCTCCTTCCCTCCCTCCCCTCCTTCTCTTTTGCCTTCTTCGC
TGGCTCGCTTCTTCAGTTTACTCTTCACTTCATCTCTCAAATCCTCCCTC
CCTCCCTCCCTCCCTTCCTCCCCTCCTCCCTTCCTCCCTTCTTCTCTTCC
TAGGTGATGGCTAAGGCCCGCGTCGCCTACGACATGGGCTTGCTCAACGG
AAAGGAGGTCCGTCTAACCCTTCCTCGCCCCCTCCCTCCACCTCCTAGAA
TAATACGCCCTCCCTCCCTCACTCCTTCCCTCCCTCCCTGGCAGTTCCTC
CAAGCGCGCGCCTACGCCCTCTATGCAGCCTTGTCGGCCCTCGACGGCGA
CTACCTGACTGCCCGCGAGTACAGAGGCTTGCTCGAGGTGGGGAGGGAGG
AAGAGAAGGAGGGAGGGGAGGGGGGAACGGGACTGGCATGACATTGTTCT
CTCCGCATGACCGTTATACTCAGACCGTCCTCCGATCCCTCCCTCCCTCA
TTCCCCCCCCTCCCTCCCTCCCACAGGACTACATCGCCTCGACCTCCGGT
GTGAACCTCTACGACGCCCGCCTCCTGTCCCCCTACTCCTTCGAACCCGA
GATTCAAACATGGGCCAACACCCCCCAGGCCAAGCGGGCCCTGCACTTGC
CCCTGAATGCCACGTGGAAGACCAGCGAGGAGGTACAGGCGGATGCTTCT
CCACCATCACTCTTCCCTCCTCTCCTCCCTCCCTCCCTCGGCTTTTGGGG
AGTATGGAGAGTAGCAGGAACACGGGACGGTTTCTTCCTAGTCCCCCCCC
TTCCCTTCCTTCTTTCCCGTCGCCTGTGATCCTGGTCAAAGGGGAAAGAA
AGGCCACGCTCAAACCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC back to topCoding sequence (CDS) from alignment at chr6:17041..21135+ >NO06G00040.1 ID=NO06G00040.1|Name=NO06G00040.1|organism=Nannochloropsis oceanica|type=CDS|length=1947bp|location=Sequence derived from alignment at chr6:17041..21135+ (Nannochloropsis oceanica) ATGCCACGCACCCCCCTGTACCCCCCCCTGCCTTTTTTTAAACTGGCAGC AGCCCATATCAAGCTCAAGCTCAAGCACATTAATTTGCCCACTCCAACTT CCCCATTCCCCCGCAGGCGTAGGCAAACAAGCCGCGAAAATAGCACGGAT GATTCACGGTGTGCCGTGGCTGGGGCCCGCTCTCGCTTGGGCTCTTATTT GAATTTGCTACAGTCAAATCTCCTCAATGCCACACATCATCACCCCCCAC GGCCACACTACACAATTTATCTGGGGCCTGAGAAACACGTAGGCCATGAA TGCGTTCCAGTGGCCTTGTCACCTTTGATGTGGTCGCCTCAAAGCTATGC ATATGATACTCTGCCTTCTAGAATCAGTGCTGCGTCTCCCTGCTTCCGAT CCTCCCTCCCCCGGGAGTACAGGACCCGCTGCTGCGGCCAGGGGCTTGCA ACTCGCACACGATGCAAGCGCACCGAAGCATGTCTTTTTCAATCCATCTC TGCTATAACTATTCTTATCTCTTCCACCTTTACAACCCCCCAGACACACA CACACGCCATGCGTCCGCTCTCCCTCCTCGCCTTTTTGCTCCCCGCCCTC CTCGCCGTCACCAATGGAGTCCCCTCATCCTTCCAGTCGGGCCTCCTCCC CGTCACTCGCAACTCGTCTCTCTTCTACTGGTACTGCCCTCCTTCCGGCC CTGCCTCTCGTCCCCCCCTCTCCACCAACTCCACGCCTCTGATTCTGTGG TTGCAAGGGGGGCCGGGGGCGAGTGGTTTAATTGGGTTGCTCTACGAGAT GGGGCCGTACCGACTCGAGAAGGACAATGCTTCTTCTTCCTTCTCCCTTG TCGACCGCACTGTCGGTGCTTGGAGCGAAAGTTATGGGATGCTCTTCGTA GATTCTCCTGTCGGCACGGGCTTCAGCGAGGTGGGAGGACCGGACGCTTA CTCTCGCACTGAGGAGGACGTGGCCGAGAATCTCTACGTCTTCTTGCAGG GCTTCTACGCCATGTACCCGGAGCTGCTGGATGGCGGGCTCTACATCATG GGCGAGAGCTATGCGGGCCACTACATCCCATCCCTCGCTACCTACCTCCT GCGCCGCAATGACGACATTCCTCTCCCCACCTCCTCCCCTACGACCTCCC CCTCTACCTCCCCCTCTACCTCCCCCTCTACCTCCCCCTCTACCTCCCCC ATGGCCCCTCCCACCGCCTCCCCCTCTACCTCCCCCTCTACCTCCCCCTC TACCTCCCCTATCGCCCCTCCCACCGCACTTCCCACCTCATCACCTTTTC CCCCCGTTTCCTCCTCCTCCTTGCATCTGCGTGGTGCAAGTTCTGCGGTG ATGCGGGAAGAAAAAAGCGCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTC CTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCCCGGTCTACATTCCTC TCAAGGGTATTGCCATCGGAAACGGCCTCACCAACCCCGCCCTCCAGGTG ATGGCTAAGGCCCGCGTCGCCTACGACATGGGCTTGCTCAACGGAAAGGA GTTCCTCCAAGCGCGCGCCTACGCCCTCTATGCAGCCTTGTCGGCCCTCG ACGGCGACTACCTGACTGCCCGCGAGTACAGAGGCTTGCTCGAGGACTAC ATCGCCTCGACCTCCGGTGTGAACCTCTACGACGCCCGCCTCCTGTCCCC CTACTCCTTCGAACCCGAGATTCAAACATGGGCCAACACCCCCCAGGCCA AGCGGGCCCTGCACTTGCCCCTGAATGCCACGTGGAAGACCAGCGAGGAG GTACAGGCGGATGCTTCTCCACCATCACTCTTCCCTCCTCTCCTCCCTCC CTCCCTCGGCTTTTGGGGAGTATGGAGAGTAGCAGGAACACGGGACGGTT TCTTCCTAGTCCCCCCCCTTCCCTTCCTTCTTTCCCGTCGCCTGTGA back to top
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