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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr6 | genome | chr6:155..2780 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO06G00010.1 vs.
Match: OGQ71395.1 (hypothetical protein A2W73_04705 [Deltaproteobacteria bacterium RIFCSPLOWO2_12_55_13]) HSP 1 Score: 85.5 bits (210), Expect = 7.500e-13 Identity = 69/242 (28.51%), Postives = 107/242 (44.21%), Query Frame = 0
Query: 454 TPEGVDVKLTFFNGTTVVG--NITFADVTTIGITTVTPKDPGDPTYVVPSEFSLGEPPIYYSIVTTAIISGTTAVCLKFPSDSIPSNKQPQLMHYEDDRWVDITTAVE--NNAVCGMTQSFSPFAVGYGFPTTLEDLLSVTKVTFVNNKKWNLHGYLNLDEAPDILASINAEGLSCTVMDSEGEVIDAFATATFGGSDCRPRSGRKEMACIR-KGVGT--TTFIRMKGSAVYKIIVRIRNKT 689
TP G +V+ T + TT ++TFA+VT G T++T G + PS F LG PP YY I TTA+ SG+ VC+ + S +L H E WVD T +++ N+ +C S SPFA+ P + VT ++ K + +NL + +I F+T TF P + A ++ KG GT +F + G + ++V + +T
Sbjct: 595 TPAGTNVQTTPVDSTTGTTPVSVTFANVTQAGTTSLTTSSSGPAS---PSGFQLGSPPTYYEITTTALYSGSITVCINYSGVSFDDESNLRLYHLESGVWVDQTVSLDTTNDIICASASSLSPFAIFEPIP------IPVT----IDIKPGSFPNSINLGSGGTVPVAI-------------------FSTQTFDARTLTPSTITLASAPVKLKGQGTPMASFQDVNGDGLLDVVVHVSTET 804
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO06G00010.1 ID=NO06G00010.1|Name=NO06G00010.1|organism=Nannochloropsis oceanica|type=mRNA|length=2626bp CTCAAAACACAGGAAAAAATCTTGACCCATGATGATCATTACTTGGCGTA ATCAGCCTCTGGGCCTTTTGCTTGTCGGTGCGGTGATCTCCTACGGAAGT CTTGCATGCGACCTAAATGTTCCTAATCAATATCTCTCAGTCGGTCTCGC TGTCTCTAGTGCATCCAATGGCGATGTTATCTGTGTGGCACCAGGAGTCT ATAATGATGCTTACTTTGACCTTGCCACCAAGGGATTGACACTGAAAGGG GCCCAAGCGGGCGTCGATGCTCGTACTCGCCCGGCCAAACATTGGTCGGA AGGGGACTCTTACCCCGCAGAAGAAACAGTGTTTACCCACAATGGAGGTC ACTTTTTCACTATTGCTAGGGGGATAGGTGCGACTGTTGATGGCATATTC ATGCCTAATATGGGACGCCGTGCAATGGATGATAATTTCGGCAGACAATC CGACGTGGTCAGTTTGACAGTCAAAAATAGCATTTTCAAGTCCACCGAGA CTTACACGGGTAATCAAAATGGCAATGTTCAATTTGCGGCAGGCTTCGAT GCATCAGCGAACAACGTGACCTTTGAACGTAATTACATTGAGACATTTAC CACTACCTTCCTGTACGCACCCTCGCCGAGATGTAACGATTGGATAATCA AAGACAATGAGATCGTGAGCTACTATTTCGCGTTTGGCCCATTTGCCGGG GACCGAGATGGCTTTCCTGGTGGGTTTGTGATACAGGGAAACAATTTTAA GGGAACCATTCCTGGTAATCCTCCTCCTCGAGCAGATTCTCCTGAGGGAT ATGATGCCCTAGCATTTAATGCTGTCCTGGGTAATGCGATTATCACAGAA AATACATTCGACAAGATTATCCGCGGTCTTGGGTCAGTTTGGTTATACGA CGCCATTGTTCACGGGAACAATTTGACAGATAATTATTTGAGTGCTTTAG CACTCTGGAGCAGTGATACTTCGAACCCACCCAAGCCCCCTTCAAGCAAT GTTATTATCTCGAACAATATTATTGAATACAATGGCACGCCTCAAGGCGA TGACGAAAATTTTTTATCAAACGGAATTTTCATCAACCGCAATGCTGGTG GAGTCTTACGTGTCAATGCTTCCACTATACATATTAACGATAATCGCCTT ACCAATTTGGGCATCAGTGGTACCTCGCAAGTATGGGCGATCCTGCAAAA TGGGGTGGACAACGCCCAAGCCAAAACAAACTTCTGGGGATCGAGCCCAA GTGACATAAATGTGCGAGGAAATGTGGTAACATCTCCGTGGATTACCTCG TACAAGGACGATCCCGGCAAGGACACCCTTCCCGGCTTCTGGCCTATCGA CATTCTTCTAGGTGCTCCAGCTGGTGAGCCTACTCCCACACCAGAGGGAG TCGATGTAAAATTGACATTTTTCAATGGTACTACTGTTGTCGGGAACATC ACATTCGCTGATGTGACTACCATCGGGATCACGACCGTGACCCCCAAGGA CCCTGGTGATCCGACGTATGTAGTACCTTCCGAGTTCAGTCTGGGAGAAC CCCCAATTTATTATTCCATCGTCACTACAGCCATAATTTCGGGTACCACT GCCGTCTGTTTAAAGTTCCCGTCGGATTCTATTCCCTCCAATAAGCAGCC TCAACTTATGCATTACGAGGACGATCGATGGGTTGATATTACAACAGCTG TTGAAAACAACGCTGTCTGCGGCATGACTCAGTCTTTTAGTCCATTTGCC GTAGGATACGGTTTTCCAACAACACTGGAAGATCTCCTAAGCGTCACGAA GGTCACCTTTGTCAACAATAAGAAATGGAATTTACATGGATACTTAAATC TAGATGAGGCGCCCGATATTCTGGCCAGTATTAATGCGGAAGGACTTTCC TGCACTGTCATGGATTCGGAAGGAGAGGTAATTGATGCATTTGCGACCGC GACATTCGGGGGAAGTGATTGTCGTCCCAGGTCTGGGCGGAAGGAGATGG CATGTATTCGAAAGGGCGTGGGAACCACCACCTTCATACGAATGAAAGGG TCTGCTGTCTACAAAATAATTGTCAGGATTCGCAATAAAACTACACTGGT ACTCCCAAGGACGTCCGAGACACCACTTCAGGTAAAACTCACCATACCTG GCTCTACAACGGCCTATCTGGATGATACTGTCGGTAATTGCACCACTAGG GGGAAAGGACGAGTTCTCAAATGCCGCGGATCGTAAAACTCAATATCCTT TCCTCCGCAACTAATAATCGACATCATTTAATCCTTGAATGTCACTGTCA TGTGACCAGAATCAAATATTGTCTCCAAAATCCACTCAGCGAATTGTGAA TGCCTTCTTTATTGCATAACAAAGTATCCTCCCAAGAATTACTCATTTCC TCTCCGGGACATCCTCAAATTATGTTATGTAATCGCCTCCCTATTTACCA AGGTAACCTCCAACGATCTTGATTATTATTATTGCCTTACAATTATTATC TCTCCAAGAGACATTGAATTTCCCTCAAGGACCCCCTAGATCTATTAAGT CGATTTGATTTATCTATCATCAAGATTGTATCCAACAATATCTTAAAAGA AGGAATTCCAACGACCAACAGTACGG back to topprotein sequence of NO06G00010.1 >NO06G00010.1-protein ID=NO06G00010.1-protein|Name=NO06G00010.1|organism=Nannochloropsis oceanica|type=polypeptide|length=736bp MMIITWRNQPLGLLLVGAVISYGSLACDLNVPNQYLSVGLAVSSASNGDV ICVAPGVYNDAYFDLATKGLTLKGAQAGVDARTRPAKHWSEGDSYPAEET VFTHNGGHFFTIARGIGATVDGIFMPNMGRRAMDDNFGRQSDVVSLTVKN SIFKSTETYTGNQNGNVQFAAGFDASANNVTFERNYIETFTTTFLYAPSP RCNDWIIKDNEIVSYYFAFGPFAGDRDGFPGGFVIQGNNFKGTIPGNPPP RADSPEGYDALAFNAVLGNAIITENTFDKIIRGLGSVWLYDAIVHGNNLT DNYLSALALWSSDTSNPPKPPSSNVIISNNIIEYNGTPQGDDENFLSNGI FINRNAGGVLRVNASTIHINDNRLTNLGISGTSQVWAILQNGVDNAQAKT NFWGSSPSDINVRGNVVTSPWITSYKDDPGKDTLPGFWPIDILLGAPAGE PTPTPEGVDVKLTFFNGTTVVGNITFADVTTIGITTVTPKDPGDPTYVVP SEFSLGEPPIYYSIVTTAIISGTTAVCLKFPSDSIPSNKQPQLMHYEDDR WVDITTAVENNAVCGMTQSFSPFAVGYGFPTTLEDLLSVTKVTFVNNKKW NLHGYLNLDEAPDILASINAEGLSCTVMDSEGEVIDAFATATFGGSDCRP RSGRKEMACIRKGVGTTTFIRMKGSAVYKIIVRIRNKTTLVLPRTSETPL QVKLTIPGSTTAYLDDTVGNCTTRGKGRVLKCRGS* back to topmRNA from alignment at chr6:155..2780- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO06G00010.1 ID=NO06G00010.1|Name=NO06G00010.1|organism=Nannochloropsis oceanica|type=mRNA|length=2626bp|location=Sequence derived from alignment at chr6:155..2780- (Nannochloropsis oceanica) CTCAAAACACAGGAAAAAATCTTGACCCATGATGATCATTACTTGGCGTA
ATCAGCCTCTGGGCCTTTTGCTTGTCGGTGCGGTGATCTCCTACGGAAGT
CTTGCATGCGACCTAAATGTTCCTAATCAATATCTCTCAGTCGGTCTCGC
TGTCTCTAGTGCATCCAATGGCGATGTTATCTGTGTGGCACCAGGAGTCT
ATAATGATGCTTACTTTGACCTTGCCACCAAGGGATTGACACTGAAAGGG
GCCCAAGCGGGCGTCGATGCTCGTACTCGCCCGGCCAAACATTGGTCGGA
AGGGGACTCTTACCCCGCAGAAGAAACAGTGTTTACCCACAATGGAGGTC
ACTTTTTCACTATTGCTAGGGGGATAGGTGCGACTGTTGATGGCATATTC
ATGCCTAATATGGGACGCCGTGCAATGGATGATAATTTCGGCAGACAATC
CGACGTGGTCAGTTTGACAGTCAAAAATAGCATTTTCAAGTCCACCGAGA
CTTACACGGGTAATCAAAATGGCAATGTTCAATTTGCGGCAGGCTTCGAT
GCATCAGCGAACAACGTGACCTTTGAACGTAATTACATTGAGACATTTAC
CACTACCTTCCTGTACGCACCCTCGCCGAGATGTAACGATTGGATAATCA
AAGACAATGAGATCGTGAGCTACTATTTCGCGTTTGGCCCATTTGCCGGG
GACCGAGATGGCTTTCCTGGTGGGTTTGTGATACAGGGAAACAATTTTAA
GGGAACCATTCCTGGTAATCCTCCTCCTCGAGCAGATTCTCCTGAGGGAT
ATGATGCCCTAGCATTTAATGCTGTCCTGGGTAATGCGATTATCACAGAA
AATACATTCGACAAGATTATCCGCGGTCTTGGGTCAGTTTGGTTATACGA
CGCCATTGTTCACGGGAACAATTTGACAGATAATTATTTGAGTGCTTTAG
CACTCTGGAGCAGTGATACTTCGAACCCACCCAAGCCCCCTTCAAGCAAT
GTTATTATCTCGAACAATATTATTGAATACAATGGCACGCCTCAAGGCGA
TGACGAAAATTTTTTATCAAACGGAATTTTCATCAACCGCAATGCTGGTG
GAGTCTTACGTGTCAATGCTTCCACTATACATATTAACGATAATCGCCTT
ACCAATTTGGGCATCAGTGGTACCTCGCAAGTATGGGCGATCCTGCAAAA
TGGGGTGGACAACGCCCAAGCCAAAACAAACTTCTGGGGATCGAGCCCAA
GTGACATAAATGTGCGAGGAAATGTGGTAACATCTCCGTGGATTACCTCG
TACAAGGACGATCCCGGCAAGGACACCCTTCCCGGCTTCTGGCCTATCGA
CATTCTTCTAGGTGCTCCAGCTGGTGAGCCTACTCCCACACCAGAGGGAG
TCGATGTAAAATTGACATTTTTCAATGGTACTACTGTTGTCGGGAACATC
ACATTCGCTGATGTGACTACCATCGGGATCACGACCGTGACCCCCAAGGA
CCCTGGTGATCCGACGTATGTAGTACCTTCCGAGTTCAGTCTGGGAGAAC
CCCCAATTTATTATTCCATCGTCACTACAGCCATAATTTCGGGTACCACT
GCCGTCTGTTTAAAGTTCCCGTCGGATTCTATTCCCTCCAATAAGCAGCC
TCAACTTATGCATTACGAGGACGATCGATGGGTTGATATTACAACAGCTG
TTGAAAACAACGCTGTCTGCGGCATGACTCAGTCTTTTAGTCCATTTGCC
GTAGGATACGGTTTTCCAACAACACTGGAAGATCTCCTAAGCGTCACGAA
GGTCACCTTTGTCAACAATAAGAAATGGAATTTACATGGATACTTAAATC
TAGATGAGGCGCCCGATATTCTGGCCAGTATTAATGCGGAAGGACTTTCC
TGCACTGTCATGGATTCGGAAGGAGAGGTAATTGATGCATTTGCGACCGC
GACATTCGGGGGAAGTGATTGTCGTCCCAGGTCTGGGCGGAAGGAGATGG
CATGTATTCGAAAGGGCGTGGGAACCACCACCTTCATACGAATGAAAGGG
TCTGCTGTCTACAAAATAATTGTCAGGATTCGCAATAAAACTACACTGGT
ACTCCCAAGGACGTCCGAGACACCACTTCAGGTAAAACTCACCATACCTG
GCTCTACAACGGCCTATCTGGATGATACTGTCGGTAATTGCACCACTAGG
GGGAAAGGACGAGTTCTCAAATGCCGCGGATCGTAAAACTCAATATCCTT
TCCTCCGCAACTAATAATCGACATCATTTAATCCTTGAATGTCACTGTCA
TGTGACCAGAATCAAATATTGTCTCCAAAATCCACTCAGCGAATTGTGAA
TGCCTTCTTTATTGCATAACAAAGTATCCTCCCAAGAATTACTCATTTCC
TCTCCGGGACATCCTCAAATTATGTTATGTAATCGCCTCCCTATTTACCA
AGGTAACCTCCAACGATCTTGATTATTATTATTGCCTTACAATTATTATC
TCTCCAAGAGACATTGAATTTCCCTCAAGGACCCCCTAGATCTATTAAGT
CGATTTGATTTATCTATCATCAAGATTGTATCCAACAATATCTTAAAAGA
AGGAATTCCAACGACCAACAGTACGG back to topCoding sequence (CDS) from alignment at chr6:155..2780- >NO06G00010.1 ID=NO06G00010.1|Name=NO06G00010.1|organism=Nannochloropsis oceanica|type=CDS|length=2208bp|location=Sequence derived from alignment at chr6:155..2780- (Nannochloropsis oceanica) ATGATGATCATTACTTGGCGTAATCAGCCTCTGGGCCTTTTGCTTGTCGG TGCGGTGATCTCCTACGGAAGTCTTGCATGCGACCTAAATGTTCCTAATC AATATCTCTCAGTCGGTCTCGCTGTCTCTAGTGCATCCAATGGCGATGTT ATCTGTGTGGCACCAGGAGTCTATAATGATGCTTACTTTGACCTTGCCAC CAAGGGATTGACACTGAAAGGGGCCCAAGCGGGCGTCGATGCTCGTACTC GCCCGGCCAAACATTGGTCGGAAGGGGACTCTTACCCCGCAGAAGAAACA GTGTTTACCCACAATGGAGGTCACTTTTTCACTATTGCTAGGGGGATAGG TGCGACTGTTGATGGCATATTCATGCCTAATATGGGACGCCGTGCAATGG ATGATAATTTCGGCAGACAATCCGACGTGGTCAGTTTGACAGTCAAAAAT AGCATTTTCAAGTCCACCGAGACTTACACGGGTAATCAAAATGGCAATGT TCAATTTGCGGCAGGCTTCGATGCATCAGCGAACAACGTGACCTTTGAAC GTAATTACATTGAGACATTTACCACTACCTTCCTGTACGCACCCTCGCCG AGATGTAACGATTGGATAATCAAAGACAATGAGATCGTGAGCTACTATTT CGCGTTTGGCCCATTTGCCGGGGACCGAGATGGCTTTCCTGGTGGGTTTG TGATACAGGGAAACAATTTTAAGGGAACCATTCCTGGTAATCCTCCTCCT CGAGCAGATTCTCCTGAGGGATATGATGCCCTAGCATTTAATGCTGTCCT GGGTAATGCGATTATCACAGAAAATACATTCGACAAGATTATCCGCGGTC TTGGGTCAGTTTGGTTATACGACGCCATTGTTCACGGGAACAATTTGACA GATAATTATTTGAGTGCTTTAGCACTCTGGAGCAGTGATACTTCGAACCC ACCCAAGCCCCCTTCAAGCAATGTTATTATCTCGAACAATATTATTGAAT ACAATGGCACGCCTCAAGGCGATGACGAAAATTTTTTATCAAACGGAATT TTCATCAACCGCAATGCTGGTGGAGTCTTACGTGTCAATGCTTCCACTAT ACATATTAACGATAATCGCCTTACCAATTTGGGCATCAGTGGTACCTCGC AAGTATGGGCGATCCTGCAAAATGGGGTGGACAACGCCCAAGCCAAAACA AACTTCTGGGGATCGAGCCCAAGTGACATAAATGTGCGAGGAAATGTGGT AACATCTCCGTGGATTACCTCGTACAAGGACGATCCCGGCAAGGACACCC TTCCCGGCTTCTGGCCTATCGACATTCTTCTAGGTGCTCCAGCTGGTGAG CCTACTCCCACACCAGAGGGAGTCGATGTAAAATTGACATTTTTCAATGG TACTACTGTTGTCGGGAACATCACATTCGCTGATGTGACTACCATCGGGA TCACGACCGTGACCCCCAAGGACCCTGGTGATCCGACGTATGTAGTACCT TCCGAGTTCAGTCTGGGAGAACCCCCAATTTATTATTCCATCGTCACTAC AGCCATAATTTCGGGTACCACTGCCGTCTGTTTAAAGTTCCCGTCGGATT CTATTCCCTCCAATAAGCAGCCTCAACTTATGCATTACGAGGACGATCGA TGGGTTGATATTACAACAGCTGTTGAAAACAACGCTGTCTGCGGCATGAC TCAGTCTTTTAGTCCATTTGCCGTAGGATACGGTTTTCCAACAACACTGG AAGATCTCCTAAGCGTCACGAAGGTCACCTTTGTCAACAATAAGAAATGG AATTTACATGGATACTTAAATCTAGATGAGGCGCCCGATATTCTGGCCAG TATTAATGCGGAAGGACTTTCCTGCACTGTCATGGATTCGGAAGGAGAGG TAATTGATGCATTTGCGACCGCGACATTCGGGGGAAGTGATTGTCGTCCC AGGTCTGGGCGGAAGGAGATGGCATGTATTCGAAAGGGCGTGGGAACCAC CACCTTCATACGAATGAAAGGGTCTGCTGTCTACAAAATAATTGTCAGGA TTCGCAATAAAACTACACTGGTACTCCCAAGGACGTCCGAGACACCACTT CAGGTAAAACTCACCATACCTGGCTCTACAACGGCCTATCTGGATGATAC TGTCGGTAATTGCACCACTAGGGGGAAAGGACGAGTTCTCAAATGCCGCG GATCGTAA back to top
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