NO06G00010.1, NO06G00010.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G00010.1
Unique NameNO06G00010.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2626
Alignment locationchr6:155..2780 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:155..2780 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO06G00010.1 vs.
Match: OGQ71395.1 (hypothetical protein A2W73_04705 [Deltaproteobacteria bacterium RIFCSPLOWO2_12_55_13])

HSP 1 Score: 85.5 bits (210), Expect = 7.500e-13
Identity = 69/242 (28.51%), Postives = 107/242 (44.21%), Query Frame = 0
Query:  454 TPEGVDVKLTFFNGTTVVG--NITFADVTTIGITTVTPKDPGDPTYVVPSEFSLGEPPIYYSIVTTAIISGTTAVCLKFPSDSIPSNKQPQLMHYEDDRWVDITTAVE--NNAVCGMTQSFSPFAVGYGFPTTLEDLLSVTKVTFVNNKKWNLHGYLNLDEAPDILASINAEGLSCTVMDSEGEVIDAFATATFGGSDCRPRSGRKEMACIR-KGVGT--TTFIRMKGSAVYKIIVRIRNKT 689
            TP G +V+ T  + TT     ++TFA+VT  G T++T    G  +   PS F LG PP YY I TTA+ SG+  VC+ +   S       +L H E   WVD T +++  N+ +C    S SPFA+    P      + VT    ++ K  +    +NL     +  +I                   F+T TF      P +     A ++ KG GT   +F  + G  +  ++V +  +T
Sbjct:  595 TPAGTNVQTTPVDSTTGTTPVSVTFANVTQAGTTSLTTSSSGPAS---PSGFQLGSPPTYYEITTTALYSGSITVCINYSGVSFDDESNLRLYHLESGVWVDQTVSLDTTNDIICASASSLSPFAIFEPIP------IPVT----IDIKPGSFPNSINLGSGGTVPVAI-------------------FSTQTFDARTLTPSTITLASAPVKLKGQGTPMASFQDVNGDGLLDVVVHVSTET 804          
The following BLAST results are available for this feature:
BLAST of NO06G00010.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
OGQ71395.17.500e-1328.51hypothetical protein A2W73_04705 [Deltaproteobacte... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G00010NO06G00010Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G00010.1NO06G00010.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G00010.1.cds1NO06G00010.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G00010.1 ID=NO06G00010.1|Name=NO06G00010.1|organism=Nannochloropsis oceanica|type=mRNA|length=2626bp
CTCAAAACACAGGAAAAAATCTTGACCCATGATGATCATTACTTGGCGTA
ATCAGCCTCTGGGCCTTTTGCTTGTCGGTGCGGTGATCTCCTACGGAAGT
CTTGCATGCGACCTAAATGTTCCTAATCAATATCTCTCAGTCGGTCTCGC
TGTCTCTAGTGCATCCAATGGCGATGTTATCTGTGTGGCACCAGGAGTCT
ATAATGATGCTTACTTTGACCTTGCCACCAAGGGATTGACACTGAAAGGG
GCCCAAGCGGGCGTCGATGCTCGTACTCGCCCGGCCAAACATTGGTCGGA
AGGGGACTCTTACCCCGCAGAAGAAACAGTGTTTACCCACAATGGAGGTC
ACTTTTTCACTATTGCTAGGGGGATAGGTGCGACTGTTGATGGCATATTC
ATGCCTAATATGGGACGCCGTGCAATGGATGATAATTTCGGCAGACAATC
CGACGTGGTCAGTTTGACAGTCAAAAATAGCATTTTCAAGTCCACCGAGA
CTTACACGGGTAATCAAAATGGCAATGTTCAATTTGCGGCAGGCTTCGAT
GCATCAGCGAACAACGTGACCTTTGAACGTAATTACATTGAGACATTTAC
CACTACCTTCCTGTACGCACCCTCGCCGAGATGTAACGATTGGATAATCA
AAGACAATGAGATCGTGAGCTACTATTTCGCGTTTGGCCCATTTGCCGGG
GACCGAGATGGCTTTCCTGGTGGGTTTGTGATACAGGGAAACAATTTTAA
GGGAACCATTCCTGGTAATCCTCCTCCTCGAGCAGATTCTCCTGAGGGAT
ATGATGCCCTAGCATTTAATGCTGTCCTGGGTAATGCGATTATCACAGAA
AATACATTCGACAAGATTATCCGCGGTCTTGGGTCAGTTTGGTTATACGA
CGCCATTGTTCACGGGAACAATTTGACAGATAATTATTTGAGTGCTTTAG
CACTCTGGAGCAGTGATACTTCGAACCCACCCAAGCCCCCTTCAAGCAAT
GTTATTATCTCGAACAATATTATTGAATACAATGGCACGCCTCAAGGCGA
TGACGAAAATTTTTTATCAAACGGAATTTTCATCAACCGCAATGCTGGTG
GAGTCTTACGTGTCAATGCTTCCACTATACATATTAACGATAATCGCCTT
ACCAATTTGGGCATCAGTGGTACCTCGCAAGTATGGGCGATCCTGCAAAA
TGGGGTGGACAACGCCCAAGCCAAAACAAACTTCTGGGGATCGAGCCCAA
GTGACATAAATGTGCGAGGAAATGTGGTAACATCTCCGTGGATTACCTCG
TACAAGGACGATCCCGGCAAGGACACCCTTCCCGGCTTCTGGCCTATCGA
CATTCTTCTAGGTGCTCCAGCTGGTGAGCCTACTCCCACACCAGAGGGAG
TCGATGTAAAATTGACATTTTTCAATGGTACTACTGTTGTCGGGAACATC
ACATTCGCTGATGTGACTACCATCGGGATCACGACCGTGACCCCCAAGGA
CCCTGGTGATCCGACGTATGTAGTACCTTCCGAGTTCAGTCTGGGAGAAC
CCCCAATTTATTATTCCATCGTCACTACAGCCATAATTTCGGGTACCACT
GCCGTCTGTTTAAAGTTCCCGTCGGATTCTATTCCCTCCAATAAGCAGCC
TCAACTTATGCATTACGAGGACGATCGATGGGTTGATATTACAACAGCTG
TTGAAAACAACGCTGTCTGCGGCATGACTCAGTCTTTTAGTCCATTTGCC
GTAGGATACGGTTTTCCAACAACACTGGAAGATCTCCTAAGCGTCACGAA
GGTCACCTTTGTCAACAATAAGAAATGGAATTTACATGGATACTTAAATC
TAGATGAGGCGCCCGATATTCTGGCCAGTATTAATGCGGAAGGACTTTCC
TGCACTGTCATGGATTCGGAAGGAGAGGTAATTGATGCATTTGCGACCGC
GACATTCGGGGGAAGTGATTGTCGTCCCAGGTCTGGGCGGAAGGAGATGG
CATGTATTCGAAAGGGCGTGGGAACCACCACCTTCATACGAATGAAAGGG
TCTGCTGTCTACAAAATAATTGTCAGGATTCGCAATAAAACTACACTGGT
ACTCCCAAGGACGTCCGAGACACCACTTCAGGTAAAACTCACCATACCTG
GCTCTACAACGGCCTATCTGGATGATACTGTCGGTAATTGCACCACTAGG
GGGAAAGGACGAGTTCTCAAATGCCGCGGATCGTAAAACTCAATATCCTT
TCCTCCGCAACTAATAATCGACATCATTTAATCCTTGAATGTCACTGTCA
TGTGACCAGAATCAAATATTGTCTCCAAAATCCACTCAGCGAATTGTGAA
TGCCTTCTTTATTGCATAACAAAGTATCCTCCCAAGAATTACTCATTTCC
TCTCCGGGACATCCTCAAATTATGTTATGTAATCGCCTCCCTATTTACCA
AGGTAACCTCCAACGATCTTGATTATTATTATTGCCTTACAATTATTATC
TCTCCAAGAGACATTGAATTTCCCTCAAGGACCCCCTAGATCTATTAAGT
CGATTTGATTTATCTATCATCAAGATTGTATCCAACAATATCTTAAAAGA
AGGAATTCCAACGACCAACAGTACGG
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protein sequence of NO06G00010.1

>NO06G00010.1-protein ID=NO06G00010.1-protein|Name=NO06G00010.1|organism=Nannochloropsis oceanica|type=polypeptide|length=736bp
MMIITWRNQPLGLLLVGAVISYGSLACDLNVPNQYLSVGLAVSSASNGDV
ICVAPGVYNDAYFDLATKGLTLKGAQAGVDARTRPAKHWSEGDSYPAEET
VFTHNGGHFFTIARGIGATVDGIFMPNMGRRAMDDNFGRQSDVVSLTVKN
SIFKSTETYTGNQNGNVQFAAGFDASANNVTFERNYIETFTTTFLYAPSP
RCNDWIIKDNEIVSYYFAFGPFAGDRDGFPGGFVIQGNNFKGTIPGNPPP
RADSPEGYDALAFNAVLGNAIITENTFDKIIRGLGSVWLYDAIVHGNNLT
DNYLSALALWSSDTSNPPKPPSSNVIISNNIIEYNGTPQGDDENFLSNGI
FINRNAGGVLRVNASTIHINDNRLTNLGISGTSQVWAILQNGVDNAQAKT
NFWGSSPSDINVRGNVVTSPWITSYKDDPGKDTLPGFWPIDILLGAPAGE
PTPTPEGVDVKLTFFNGTTVVGNITFADVTTIGITTVTPKDPGDPTYVVP
SEFSLGEPPIYYSIVTTAIISGTTAVCLKFPSDSIPSNKQPQLMHYEDDR
WVDITTAVENNAVCGMTQSFSPFAVGYGFPTTLEDLLSVTKVTFVNNKKW
NLHGYLNLDEAPDILASINAEGLSCTVMDSEGEVIDAFATATFGGSDCRP
RSGRKEMACIRKGVGTTTFIRMKGSAVYKIIVRIRNKTTLVLPRTSETPL
QVKLTIPGSTTAYLDDTVGNCTTRGKGRVLKCRGS*
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mRNA from alignment at chr6:155..2780-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G00010.1 ID=NO06G00010.1|Name=NO06G00010.1|organism=Nannochloropsis oceanica|type=mRNA|length=2626bp|location=Sequence derived from alignment at chr6:155..2780- (Nannochloropsis oceanica)
CTCAAAACACAGGAAAAAATCTTGACCCATGATGATCATTACTTGGCGTA ATCAGCCTCTGGGCCTTTTGCTTGTCGGTGCGGTGATCTCCTACGGAAGT CTTGCATGCGACCTAAATGTTCCTAATCAATATCTCTCAGTCGGTCTCGC TGTCTCTAGTGCATCCAATGGCGATGTTATCTGTGTGGCACCAGGAGTCT ATAATGATGCTTACTTTGACCTTGCCACCAAGGGATTGACACTGAAAGGG GCCCAAGCGGGCGTCGATGCTCGTACTCGCCCGGCCAAACATTGGTCGGA AGGGGACTCTTACCCCGCAGAAGAAACAGTGTTTACCCACAATGGAGGTC ACTTTTTCACTATTGCTAGGGGGATAGGTGCGACTGTTGATGGCATATTC ATGCCTAATATGGGACGCCGTGCAATGGATGATAATTTCGGCAGACAATC CGACGTGGTCAGTTTGACAGTCAAAAATAGCATTTTCAAGTCCACCGAGA CTTACACGGGTAATCAAAATGGCAATGTTCAATTTGCGGCAGGCTTCGAT GCATCAGCGAACAACGTGACCTTTGAACGTAATTACATTGAGACATTTAC CACTACCTTCCTGTACGCACCCTCGCCGAGATGTAACGATTGGATAATCA AAGACAATGAGATCGTGAGCTACTATTTCGCGTTTGGCCCATTTGCCGGG GACCGAGATGGCTTTCCTGGTGGGTTTGTGATACAGGGAAACAATTTTAA GGGAACCATTCCTGGTAATCCTCCTCCTCGAGCAGATTCTCCTGAGGGAT ATGATGCCCTAGCATTTAATGCTGTCCTGGGTAATGCGATTATCACAGAA AATACATTCGACAAGATTATCCGCGGTCTTGGGTCAGTTTGGTTATACGA CGCCATTGTTCACGGGAACAATTTGACAGATAATTATTTGAGTGCTTTAG CACTCTGGAGCAGTGATACTTCGAACCCACCCAAGCCCCCTTCAAGCAAT GTTATTATCTCGAACAATATTATTGAATACAATGGCACGCCTCAAGGCGA TGACGAAAATTTTTTATCAAACGGAATTTTCATCAACCGCAATGCTGGTG GAGTCTTACGTGTCAATGCTTCCACTATACATATTAACGATAATCGCCTT ACCAATTTGGGCATCAGTGGTACCTCGCAAGTATGGGCGATCCTGCAAAA TGGGGTGGACAACGCCCAAGCCAAAACAAACTTCTGGGGATCGAGCCCAA GTGACATAAATGTGCGAGGAAATGTGGTAACATCTCCGTGGATTACCTCG TACAAGGACGATCCCGGCAAGGACACCCTTCCCGGCTTCTGGCCTATCGA CATTCTTCTAGGTGCTCCAGCTGGTGAGCCTACTCCCACACCAGAGGGAG TCGATGTAAAATTGACATTTTTCAATGGTACTACTGTTGTCGGGAACATC ACATTCGCTGATGTGACTACCATCGGGATCACGACCGTGACCCCCAAGGA CCCTGGTGATCCGACGTATGTAGTACCTTCCGAGTTCAGTCTGGGAGAAC CCCCAATTTATTATTCCATCGTCACTACAGCCATAATTTCGGGTACCACT GCCGTCTGTTTAAAGTTCCCGTCGGATTCTATTCCCTCCAATAAGCAGCC TCAACTTATGCATTACGAGGACGATCGATGGGTTGATATTACAACAGCTG TTGAAAACAACGCTGTCTGCGGCATGACTCAGTCTTTTAGTCCATTTGCC GTAGGATACGGTTTTCCAACAACACTGGAAGATCTCCTAAGCGTCACGAA GGTCACCTTTGTCAACAATAAGAAATGGAATTTACATGGATACTTAAATC TAGATGAGGCGCCCGATATTCTGGCCAGTATTAATGCGGAAGGACTTTCC TGCACTGTCATGGATTCGGAAGGAGAGGTAATTGATGCATTTGCGACCGC GACATTCGGGGGAAGTGATTGTCGTCCCAGGTCTGGGCGGAAGGAGATGG CATGTATTCGAAAGGGCGTGGGAACCACCACCTTCATACGAATGAAAGGG TCTGCTGTCTACAAAATAATTGTCAGGATTCGCAATAAAACTACACTGGT ACTCCCAAGGACGTCCGAGACACCACTTCAGGTAAAACTCACCATACCTG GCTCTACAACGGCCTATCTGGATGATACTGTCGGTAATTGCACCACTAGG GGGAAAGGACGAGTTCTCAAATGCCGCGGATCGTAAAACTCAATATCCTT TCCTCCGCAACTAATAATCGACATCATTTAATCCTTGAATGTCACTGTCA TGTGACCAGAATCAAATATTGTCTCCAAAATCCACTCAGCGAATTGTGAA TGCCTTCTTTATTGCATAACAAAGTATCCTCCCAAGAATTACTCATTTCC TCTCCGGGACATCCTCAAATTATGTTATGTAATCGCCTCCCTATTTACCA AGGTAACCTCCAACGATCTTGATTATTATTATTGCCTTACAATTATTATC TCTCCAAGAGACATTGAATTTCCCTCAAGGACCCCCTAGATCTATTAAGT CGATTTGATTTATCTATCATCAAGATTGTATCCAACAATATCTTAAAAGA AGGAATTCCAACGACCAACAGTACGG
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Coding sequence (CDS) from alignment at chr6:155..2780-

>NO06G00010.1 ID=NO06G00010.1|Name=NO06G00010.1|organism=Nannochloropsis oceanica|type=CDS|length=2208bp|location=Sequence derived from alignment at chr6:155..2780- (Nannochloropsis oceanica)
ATGATGATCATTACTTGGCGTAATCAGCCTCTGGGCCTTTTGCTTGTCGG
TGCGGTGATCTCCTACGGAAGTCTTGCATGCGACCTAAATGTTCCTAATC
AATATCTCTCAGTCGGTCTCGCTGTCTCTAGTGCATCCAATGGCGATGTT
ATCTGTGTGGCACCAGGAGTCTATAATGATGCTTACTTTGACCTTGCCAC
CAAGGGATTGACACTGAAAGGGGCCCAAGCGGGCGTCGATGCTCGTACTC
GCCCGGCCAAACATTGGTCGGAAGGGGACTCTTACCCCGCAGAAGAAACA
GTGTTTACCCACAATGGAGGTCACTTTTTCACTATTGCTAGGGGGATAGG
TGCGACTGTTGATGGCATATTCATGCCTAATATGGGACGCCGTGCAATGG
ATGATAATTTCGGCAGACAATCCGACGTGGTCAGTTTGACAGTCAAAAAT
AGCATTTTCAAGTCCACCGAGACTTACACGGGTAATCAAAATGGCAATGT
TCAATTTGCGGCAGGCTTCGATGCATCAGCGAACAACGTGACCTTTGAAC
GTAATTACATTGAGACATTTACCACTACCTTCCTGTACGCACCCTCGCCG
AGATGTAACGATTGGATAATCAAAGACAATGAGATCGTGAGCTACTATTT
CGCGTTTGGCCCATTTGCCGGGGACCGAGATGGCTTTCCTGGTGGGTTTG
TGATACAGGGAAACAATTTTAAGGGAACCATTCCTGGTAATCCTCCTCCT
CGAGCAGATTCTCCTGAGGGATATGATGCCCTAGCATTTAATGCTGTCCT
GGGTAATGCGATTATCACAGAAAATACATTCGACAAGATTATCCGCGGTC
TTGGGTCAGTTTGGTTATACGACGCCATTGTTCACGGGAACAATTTGACA
GATAATTATTTGAGTGCTTTAGCACTCTGGAGCAGTGATACTTCGAACCC
ACCCAAGCCCCCTTCAAGCAATGTTATTATCTCGAACAATATTATTGAAT
ACAATGGCACGCCTCAAGGCGATGACGAAAATTTTTTATCAAACGGAATT
TTCATCAACCGCAATGCTGGTGGAGTCTTACGTGTCAATGCTTCCACTAT
ACATATTAACGATAATCGCCTTACCAATTTGGGCATCAGTGGTACCTCGC
AAGTATGGGCGATCCTGCAAAATGGGGTGGACAACGCCCAAGCCAAAACA
AACTTCTGGGGATCGAGCCCAAGTGACATAAATGTGCGAGGAAATGTGGT
AACATCTCCGTGGATTACCTCGTACAAGGACGATCCCGGCAAGGACACCC
TTCCCGGCTTCTGGCCTATCGACATTCTTCTAGGTGCTCCAGCTGGTGAG
CCTACTCCCACACCAGAGGGAGTCGATGTAAAATTGACATTTTTCAATGG
TACTACTGTTGTCGGGAACATCACATTCGCTGATGTGACTACCATCGGGA
TCACGACCGTGACCCCCAAGGACCCTGGTGATCCGACGTATGTAGTACCT
TCCGAGTTCAGTCTGGGAGAACCCCCAATTTATTATTCCATCGTCACTAC
AGCCATAATTTCGGGTACCACTGCCGTCTGTTTAAAGTTCCCGTCGGATT
CTATTCCCTCCAATAAGCAGCCTCAACTTATGCATTACGAGGACGATCGA
TGGGTTGATATTACAACAGCTGTTGAAAACAACGCTGTCTGCGGCATGAC
TCAGTCTTTTAGTCCATTTGCCGTAGGATACGGTTTTCCAACAACACTGG
AAGATCTCCTAAGCGTCACGAAGGTCACCTTTGTCAACAATAAGAAATGG
AATTTACATGGATACTTAAATCTAGATGAGGCGCCCGATATTCTGGCCAG
TATTAATGCGGAAGGACTTTCCTGCACTGTCATGGATTCGGAAGGAGAGG
TAATTGATGCATTTGCGACCGCGACATTCGGGGGAAGTGATTGTCGTCCC
AGGTCTGGGCGGAAGGAGATGGCATGTATTCGAAAGGGCGTGGGAACCAC
CACCTTCATACGAATGAAAGGGTCTGCTGTCTACAAAATAATTGTCAGGA
TTCGCAATAAAACTACACTGGTACTCCCAAGGACGTCCGAGACACCACTT
CAGGTAAAACTCACCATACCTGGCTCTACAACGGCCTATCTGGATGATAC
TGTCGGTAATTGCACCACTAGGGGGAAAGGACGAGTTCTCAAATGCCGCG
GATCGTAA
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Synonyms
Publications