NO05G05420.1, NO05G05420.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G05420.1
Unique NameNO05G05420.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1059
Alignment locationchr5:1455781..1457349 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1455781..1457349 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G05420.1 vs.
Match: EWM27855.1 (thioesterase superfamily member 4 [Nannochloropsis gaditana])

HSP 1 Score: 298.5 bits (763), Expect = 2.200e-77
Identity = 160/231 (69.26%), Postives = 180/231 (77.92%), Query Frame = 0 
Query:   57 TLRTSFPVLFAQLAAATAAVVAAISLPSPSLCETAHAGTEERRGERKAMREDGGKGEATSSATCNPSLFEHHDRVDTKLHRAYPEFLKFHLIHETLRGKEKIDGYEVYKDRRDDSIVAYARLGKLLSGHPDIIHGGSIAALLDNTMGVAFFAAKRGNGFTANLTINYKRPITCGTEVKVLARVEKVEGRKVFLRAEIRDAKDEAILYTEAKSLFITSQSPLLKGPKKIDIS 288
            T  +SF +L   + A +    A I+        TA A  +E +  ++     GG            S   +HDRVDTKLHRAYPEFL++HLIHETLRGKEKI+GYEVYKDRRDDSIVA+ARLGKLLSGHPDIIHGGSIAALLDNTMGVAFFAA +GNGFTANLTINYKRPI CGTE+KVLARVE++EGRKVFLRAEIRDAKDEA+LYTEA SLFITSQSPLL GPKK+DIS
Sbjct:   52 TQNSSFSILLKTVVAGSFVGAAFIA------GHTAGASCDEVKSPQEVNNVGGGAPVTAPYTVTFAS--NYHDRVDTKLHRAYPEFLQYHLIHETLRGKEKIEGYEVYKDRRDDSIVAFARLGKLLSGHPDIIHGGSIAALLDNTMGVAFFAANKGNGFTANLTINYKRPIICGTEIKVLARVERIEGRKVFLRAEIRDAKDEAVLYTEATSLFITSQSPLLTGPKKVDIS 274
The following BLAST results are available for this feature:
BLAST of NO05G05420.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27855.12.200e-7769.26thioesterase superfamily member 4 [Nannochloropsis... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G05420NO05G05420Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G05420.1NO05G05420.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G05420.1.cds1NO05G05420.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G05420.1.cds2NO05G05420.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G05420.1.cds3NO05G05420.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G05420.1 ID=NO05G05420.1|Name=NO05G05420.1|organism=Nannochloropsis oceanica|type=mRNA|length=1059bp
GGTTGCGTGTGTGTAGGTCGAGCATGTTGTGTGAGTCTTGCATCCCATCT
CATTTCTTCTATGCATGCGTTCGGTGCGTATCGTGATGATGCGGGCTCGC
AATCCATTTTTCAAGCATTGAGTACATACGAGTCCCAATGTTTTATACAC
AACCACAGGCCCTGTGCTCATGACGCCTTTGGCCTTCACGGTGCTCGGCA
AGCTTGGTGGCACGTTGACTTTTGCTTGTGTACGACGGAGGCTTTATCAC
TTGTTACGGCGGGCAACTTTGTCCTCCCATTATCAGGTCACTCGGCCTTA
CGGTCACAGCAATTCCGGCTGTTCACATAGCACTACCACACTTAGAACCA
GCTTCCCAGTCCTCTTTGCGCAATTGGCAGCAGCCACTGCTGCCGTCGTC
GCTGCCATTTCCCTGCCGTCGCCTAGTCTATGCGAGACGGCCCACGCCGG
GACTGAGGAGAGACGAGGTGAGAGGAAGGCAATGAGGGAGGATGGTGGAA
AAGGCGAGGCCACCTCGTCTGCTACATGCAATCCATCCTTATTCGAACAT
CATGATCGCGTCGACACCAAGCTGCATCGGGCCTATCCTGAATTCCTGAA
GTTCCACCTTATCCACGAGACGCTCCGAGGCAAAGAGAAAATTGATGGCT
ACGAAGTTTACAAAGACAGGCGGGATGATTCAATTGTGGCGTATGCTCGC
CTTGGCAAACTGCTGAGCGGACACCCCGACATAATCCACGGAGGGTCCAT
TGCGGCTTTGCTGGACAATACCATGGGAGTTGCCTTTTTCGCCGCCAAGC
GTGGCAATGGTTTTACAGCAAATCTCACCATCAACTACAAGCGACCCATC
ACGTGTGGCACCGAAGTCAAAGTTTTAGCTCGAGTAGAGAAGGTGGAAGG
GCGCAAGGTCTTCTTGCGGGCCGAGATTCGAGACGCTAAGGATGAGGCTA
TCCTCTACACTGAAGCCAAATCCCTCTTCATCACGTCTCAAAGTCCTTTA
TTGAAGGGCCCAAAGAAAATTGATATTAGCTAGCTATATTGGTAGGAAGA
TAAGACAAG
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protein sequence of NO05G05420.1

>NO05G05420.1-protein ID=NO05G05420.1-protein|Name=NO05G05420.1|organism=Nannochloropsis oceanica|type=polypeptide|length=288bp
MTPLAFTVLGKLGGTLTFACVRRRLYHLLRRATLSSHYQVTRPYGHSNSG
CSHSTTTLRTSFPVLFAQLAAATAAVVAAISLPSPSLCETAHAGTEERRG
ERKAMREDGGKGEATSSATCNPSLFEHHDRVDTKLHRAYPEFLKFHLIHE
TLRGKEKIDGYEVYKDRRDDSIVAYARLGKLLSGHPDIIHGGSIAALLDN
TMGVAFFAAKRGNGFTANLTINYKRPITCGTEVKVLARVEKVEGRKVFLR
AEIRDAKDEAILYTEAKSLFITSQSPLLKGPKKIDIS*
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mRNA from alignment at chr5:1455781..1457349-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G05420.1 ID=NO05G05420.1|Name=NO05G05420.1|organism=Nannochloropsis oceanica|type=mRNA|length=1569bp|location=Sequence derived from alignment at chr5:1455781..1457349- (Nannochloropsis oceanica)
GGTTGCGTGTGTGTAGGTCGAGCATGTTGTGTGAGTCTTGCATCCCATCT
CATTTCTTCTATGCATGCGTTCGGTGCGTATCGTGATGATGCGGGCTCGC
AATCCATTTTTCAAGCATTGAGTACATACGAGTCCCAATGTTTTATACAC
AACCACAGGCCCTGTGCTCATGACGCCTTTGGCCTTCACGGTGCTCGGCA
AGCTTGGTGGCACGTTGACTTTTGCTTGTGTACGACGGAGGCTTTATCAC
TTGTTACGGCGGGCAACTTTGTCCTCCCATTATCAGGTCACTCGGCCTTA
CGGTCACAGCAATTCCGGCTGTTCACATAGCACTACCACACTTAGAACCA
GCTTCCCAGTCCTCTTTGCGCAATTGGCAGCAGCCACTGCTGCCGTCGTC
GCTGCCATTTCCCTGCCGTCGCCTAGTCTATGCGAGACGGCCCACGCCGG
GACTGAGGAGAGACGAGGTGAGAGGAAGGCAATGAGGGAGGATGGTGGAA
AAGGCGAGGCCACCTCGTCTGCTACATGCAATCCATCCTTATTCGAACAT
CATGATCGCGTCGACACCAAGCTGCATCGGGCCTATCCTGAATTCCTGAA
GGTTGGTTATTGGCGGGATGGATGTTAATGAAGTGCTCGCCCCTCCTCCT
TTCGTTTCTCCGTTATATGGACTCTGCTCCTTTGGTTAAGCTGGGCAAGA
TACGTGCATGGCACGTCATATCTTCGTATTCTCATGCTTCTCAGTGTTTG
ACGCTATCATAGCCACTTTTGAAAGAGCATCTTCCCTCCTCCCTTCTCCC
TCCTCATCTTTTGCATCCTCCTACCACTTTCTTCCCCCACCACCCAGTTC
CACCTTATCCACGAGACGCTCCGAGGCAAAGAGAAAATTGATGGCTACGA
AGTTTACAAAGACAGGCGGGATGATTCAATTGTGGCGTATGCTCGCCTTG
GCAAACTGCTGAGCGGACACCCCGACATAATCCACGGAGGGTCCATTGCG
GCTTTGCTGGACAATACCATGGGAGTTGCCTTTTTCGCCGCCAAGGTGAG
TGATAATCATTGACAAGGGAGAAAGAGAAGAAGATTTGAACGAAGAGCTG
GGATGCCGTTTGCAAAACGGATGCTTTGGATGCGTGAACGAAGTGTTTGC
TTTATTGGACGTGAGAAGTGAGTGCAGCTAGTCGTCTTTTCACCTCTACC
CTCTACGTCTTCGGCTTGCGACCCTCCATCTGCTACTCAAATAACAGATA
ATTCGAAGCCTAAGTGCACGTTCTCATATTTTCTATTCATCTTCACGATT
CATACATAGCGTGGCAATGGTTTTACAGCAAATCTCACCATCAACTACAA
GCGACCCATCACGTGTGGCACCGAAGTCAAAGTTTTAGCTCGAGTAGAGA
AGGTGGAAGGGCGCAAGGTCTTCTTGCGGGCCGAGATTCGAGACGCTAAG
GATGAGGCTATCCTCTACACTGAAGCCAAATCCCTCTTCATCACGTCTCA
AAGTCCTTTATTGAAGGGCCCAAAGAAAATTGATATTAGCTAGCTATATT
GGTAGGAAGATAAGACAAG
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Coding sequence (CDS) from alignment at chr5:1455781..1457349-

>NO05G05420.1 ID=NO05G05420.1|Name=NO05G05420.1|organism=Nannochloropsis oceanica|type=CDS|length=864bp|location=Sequence derived from alignment at chr5:1455781..1457349- (Nannochloropsis oceanica)
ATGACGCCTTTGGCCTTCACGGTGCTCGGCAAGCTTGGTGGCACGTTGAC
TTTTGCTTGTGTACGACGGAGGCTTTATCACTTGTTACGGCGGGCAACTT
TGTCCTCCCATTATCAGGTCACTCGGCCTTACGGTCACAGCAATTCCGGC
TGTTCACATAGCACTACCACACTTAGAACCAGCTTCCCAGTCCTCTTTGC
GCAATTGGCAGCAGCCACTGCTGCCGTCGTCGCTGCCATTTCCCTGCCGT
CGCCTAGTCTATGCGAGACGGCCCACGCCGGGACTGAGGAGAGACGAGGT
GAGAGGAAGGCAATGAGGGAGGATGGTGGAAAAGGCGAGGCCACCTCGTC
TGCTACATGCAATCCATCCTTATTCGAACATCATGATCGCGTCGACACCA
AGCTGCATCGGGCCTATCCTGAATTCCTGAAGTTCCACCTTATCCACGAG
ACGCTCCGAGGCAAAGAGAAAATTGATGGCTACGAAGTTTACAAAGACAG
GCGGGATGATTCAATTGTGGCGTATGCTCGCCTTGGCAAACTGCTGAGCG
GACACCCCGACATAATCCACGGAGGGTCCATTGCGGCTTTGCTGGACAAT
ACCATGGGAGTTGCCTTTTTCGCCGCCAAGCGTGGCAATGGTTTTACAGC
AAATCTCACCATCAACTACAAGCGACCCATCACGTGTGGCACCGAAGTCA
AAGTTTTAGCTCGAGTAGAGAAGGTGGAAGGGCGCAAGGTCTTCTTGCGG
GCCGAGATTCGAGACGCTAAGGATGAGGCTATCCTCTACACTGAAGCCAA
ATCCCTCTTCATCACGTCTCAAAGTCCTTTATTGAAGGGCCCAAAGAAAA
TTGATATTAGCTAG
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Synonyms
Publications