NO05G05270.1, NO05G05270.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G05270.1
Unique NameNO05G05270.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1212
Alignment locationchr5:1401918..1403129 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1401918..1403129 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G05270.1 vs.
Match: EWM27870.1 (cof-like hydrolase [Nannochloropsis gaditana])

HSP 1 Score: 219.5 bits (558), Expect = 1.600e-53
Identity = 141/268 (52.61%), Postives = 174/268 (64.93%), Query Frame = 0 
Query:    1 MH-YFSFALFLCVSMATNVLLFPLASAAAAATRRIPRHAILPTTAAFLRPFSLRPSNPIELFAFSLSTSSSTTATSS--LSPIHLVASDVDGTLLTSRHTVSSRTVAAIRSVQQKGIRFIVATGKSRGGVRIALGKLGEELTSSSAPGGVYLQGLIVYKGGEVVYERTLEAAVALDVMAIARKKGISLIAFNGDRILCEKMDESIASVTAQHEPMPEVVPLEDFISSPSSSTNKIHKLILLGRPSVIDSIRPSLASYLGPRATLTQAQ 266
            MH Y S  +FL V MA +       S  A A   +  H +  T     RP S+RP++ ++  + S +  S  ++ S    SPI LVASDVDGTLL S HT+S RT+A+IR++++KGI F+ ATGKSRGGVR ALG LGEELTSS A GGVYLQGLIVYKGGEV+YER L+  VALDVM  AR++ +SLIAFNGDRILCEKMD +IASVT QHEPMP VV LE F+ +   S            PSV  S+  S +S   P +T +  Q
Sbjct:    1 MHGYMSITIFLTVMMANS-------SFRAVARTNLHVHVVRSTAWLAHRPSSMRPTDRLKSSSISSAAPSPFSSASHPYTSPIVLVASDVDGTLLGSSHTISPRTIASIRALRKKGILFVPATGKSRGGVRNALGALGEELTSSMATGGVYLQGLIVYKGGEVIYERMLDPQVALDVMRFARERNVSLIAFNGDRILCEKMDATIASVTQQHEPMPVVVSLEAFLLASCHSLGPASAPSSSSTPSVKVSVTTSTSS---PTSTASSVQ 258
The following BLAST results are available for this feature:
BLAST of NO05G05270.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27870.11.600e-5352.61cof-like hydrolase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G05270NO05G05270Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G05270.1NO05G05270.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G05270.1.cds1NO05G05270.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G05270.1 ID=NO05G05270.1|Name=NO05G05270.1|organism=Nannochloropsis oceanica|type=mRNA|length=1212bp
ACAGGTGCGATTGGTAATCATTTTGATGCACTATTTCTCTTTTGCGCTGT
TCCTCTGCGTCTCTATGGCGACAAACGTCCTCCTCTTTCCTCTCGCCTCA
GCCGCCGCTGCCGCCACCAGGAGAATACCGCGGCATGCAATCCTCCCCAC
CACCGCGGCATTTCTCAGGCCTTTTTCCCTCCGCCCCAGTAATCCGATCG
AGCTATTTGCATTTTCCCTTTCGACCTCTTCTTCTACAACCGCTACCAGC
TCCCTTTCCCCTATTCACCTCGTCGCCTCTGACGTAGATGGCACCCTCCT
CACAAGCAGACACACCGTCTCCTCCCGCACAGTCGCCGCTATCCGCTCCG
TCCAACAAAAAGGCATTCGCTTCATCGTTGCGACGGGTAAGAGCCGCGGT
GGCGTTCGTATCGCTCTCGGAAAATTGGGTGAGGAGCTCACTTCTAGCAG
TGCCCCGGGAGGGGTATATTTACAGGGCTTGATTGTATACAAAGGAGGAG
AGGTTGTGTACGAGCGCACGCTGGAGGCAGCTGTGGCCTTAGATGTGATG
GCGATTGCCAGAAAGAAAGGTATTTCGCTTATTGCTTTCAATGGGGATAG
GATACTCTGCGAGAAGATGGACGAAAGCATCGCGTCCGTCACCGCACAGC
ACGAGCCCATGCCAGAGGTGGTGCCCCTCGAAGACTTCATTTCTTCCCCC
TCATCATCGACAAATAAAATCCACAAACTTATCCTTCTTGGTCGCCCCTC
CGTTATCGACTCCATCCGTCCTTCCCTAGCCTCCTACCTCGGCCCGCGCG
CCACCCTCACCCAAGCGCAAGGCGATATGCTAGAAGTCCTGCCCCCTGGT
GGCTCCAAGGGACTCGGCGTCCAGAAGCTTCTCGAAGCTCTTAAAGTCGA
TAAAGCAAATCTTTTGGCCATCGGGGACCAGGAGAATGATCTAGAAATGC
TAAAAATGGCGGGAACAGCAGTCGCGATGGGTAACGCCCCGCAGCACGTG
AAGGCCGTGGCTGGGTTCCAGACCCGAAGCAATGACGAAGATGGCGCGGC
AAGGGCCTTTGAGAGGTTTTGCCTGGACATAAGGTGACCAATGTAAAGGT
TGAACGGAGGTTAATGCGTGTATAAAGAACGCAATGAGGTAACTTATAGA
TTGAGGCAGATTGGATAGAACGGTGGTAGGATAAGAGAAGAAAGCGGTTG
AAACATGGCTAT
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protein sequence of NO05G05270.1

>NO05G05270.1-protein ID=NO05G05270.1-protein|Name=NO05G05270.1|organism=Nannochloropsis oceanica|type=polypeptide|length=354bp
MHYFSFALFLCVSMATNVLLFPLASAAAAATRRIPRHAILPTTAAFLRPF
SLRPSNPIELFAFSLSTSSSTTATSSLSPIHLVASDVDGTLLTSRHTVSS
RTVAAIRSVQQKGIRFIVATGKSRGGVRIALGKLGEELTSSSAPGGVYLQ
GLIVYKGGEVVYERTLEAAVALDVMAIARKKGISLIAFNGDRILCEKMDE
SIASVTAQHEPMPEVVPLEDFISSPSSSTNKIHKLILLGRPSVIDSIRPS
LASYLGPRATLTQAQGDMLEVLPPGGSKGLGVQKLLEALKVDKANLLAIG
DQENDLEMLKMAGTAVAMGNAPQHVKAVAGFQTRSNDEDGAARAFERFCL
DIR*
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mRNA from alignment at chr5:1401918..1403129+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G05270.1 ID=NO05G05270.1|Name=NO05G05270.1|organism=Nannochloropsis oceanica|type=mRNA|length=1212bp|location=Sequence derived from alignment at chr5:1401918..1403129+ (Nannochloropsis oceanica)
ACAGGTGCGATTGGTAATCATTTTGATGCACTATTTCTCTTTTGCGCTGT
TCCTCTGCGTCTCTATGGCGACAAACGTCCTCCTCTTTCCTCTCGCCTCA
GCCGCCGCTGCCGCCACCAGGAGAATACCGCGGCATGCAATCCTCCCCAC
CACCGCGGCATTTCTCAGGCCTTTTTCCCTCCGCCCCAGTAATCCGATCG
AGCTATTTGCATTTTCCCTTTCGACCTCTTCTTCTACAACCGCTACCAGC
TCCCTTTCCCCTATTCACCTCGTCGCCTCTGACGTAGATGGCACCCTCCT
CACAAGCAGACACACCGTCTCCTCCCGCACAGTCGCCGCTATCCGCTCCG
TCCAACAAAAAGGCATTCGCTTCATCGTTGCGACGGGTAAGAGCCGCGGT
GGCGTTCGTATCGCTCTCGGAAAATTGGGTGAGGAGCTCACTTCTAGCAG
TGCCCCGGGAGGGGTATATTTACAGGGCTTGATTGTATACAAAGGAGGAG
AGGTTGTGTACGAGCGCACGCTGGAGGCAGCTGTGGCCTTAGATGTGATG
GCGATTGCCAGAAAGAAAGGTATTTCGCTTATTGCTTTCAATGGGGATAG
GATACTCTGCGAGAAGATGGACGAAAGCATCGCGTCCGTCACCGCACAGC
ACGAGCCCATGCCAGAGGTGGTGCCCCTCGAAGACTTCATTTCTTCCCCC
TCATCATCGACAAATAAAATCCACAAACTTATCCTTCTTGGTCGCCCCTC
CGTTATCGACTCCATCCGTCCTTCCCTAGCCTCCTACCTCGGCCCGCGCG
CCACCCTCACCCAAGCGCAAGGCGATATGCTAGAAGTCCTGCCCCCTGGT
GGCTCCAAGGGACTCGGCGTCCAGAAGCTTCTCGAAGCTCTTAAAGTCGA
TAAAGCAAATCTTTTGGCCATCGGGGACCAGGAGAATGATCTAGAAATGC
TAAAAATGGCGGGAACAGCAGTCGCGATGGGTAACGCCCCGCAGCACGTG
AAGGCCGTGGCTGGGTTCCAGACCCGAAGCAATGACGAAGATGGCGCGGC
AAGGGCCTTTGAGAGGTTTTGCCTGGACATAAGGTGACCAATGTAAAGGT
TGAACGGAGGTTAATGCGTGTATAAAGAACGCAATGAGGTAACTTATAGA
TTGAGGCAGATTGGATAGAACGGTGGTAGGATAAGAGAAGAAAGCGGTTG
AAACATGGCTAT
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Coding sequence (CDS) from alignment at chr5:1401918..1403129+

>NO05G05270.1 ID=NO05G05270.1|Name=NO05G05270.1|organism=Nannochloropsis oceanica|type=CDS|length=1062bp|location=Sequence derived from alignment at chr5:1401918..1403129+ (Nannochloropsis oceanica)
ATGCACTATTTCTCTTTTGCGCTGTTCCTCTGCGTCTCTATGGCGACAAA
CGTCCTCCTCTTTCCTCTCGCCTCAGCCGCCGCTGCCGCCACCAGGAGAA
TACCGCGGCATGCAATCCTCCCCACCACCGCGGCATTTCTCAGGCCTTTT
TCCCTCCGCCCCAGTAATCCGATCGAGCTATTTGCATTTTCCCTTTCGAC
CTCTTCTTCTACAACCGCTACCAGCTCCCTTTCCCCTATTCACCTCGTCG
CCTCTGACGTAGATGGCACCCTCCTCACAAGCAGACACACCGTCTCCTCC
CGCACAGTCGCCGCTATCCGCTCCGTCCAACAAAAAGGCATTCGCTTCAT
CGTTGCGACGGGTAAGAGCCGCGGTGGCGTTCGTATCGCTCTCGGAAAAT
TGGGTGAGGAGCTCACTTCTAGCAGTGCCCCGGGAGGGGTATATTTACAG
GGCTTGATTGTATACAAAGGAGGAGAGGTTGTGTACGAGCGCACGCTGGA
GGCAGCTGTGGCCTTAGATGTGATGGCGATTGCCAGAAAGAAAGGTATTT
CGCTTATTGCTTTCAATGGGGATAGGATACTCTGCGAGAAGATGGACGAA
AGCATCGCGTCCGTCACCGCACAGCACGAGCCCATGCCAGAGGTGGTGCC
CCTCGAAGACTTCATTTCTTCCCCCTCATCATCGACAAATAAAATCCACA
AACTTATCCTTCTTGGTCGCCCCTCCGTTATCGACTCCATCCGTCCTTCC
CTAGCCTCCTACCTCGGCCCGCGCGCCACCCTCACCCAAGCGCAAGGCGA
TATGCTAGAAGTCCTGCCCCCTGGTGGCTCCAAGGGACTCGGCGTCCAGA
AGCTTCTCGAAGCTCTTAAAGTCGATAAAGCAAATCTTTTGGCCATCGGG
GACCAGGAGAATGATCTAGAAATGCTAAAAATGGCGGGAACAGCAGTCGC
GATGGGTAACGCCCCGCAGCACGTGAAGGCCGTGGCTGGGTTCCAGACCC
GAAGCAATGACGAAGATGGCGCGGCAAGGGCCTTTGAGAGGTTTTGCCTG
GACATAAGGTGA
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Synonyms
Publications