NO05G05250.1, NO05G05250.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G05250.1
Unique NameNO05G05250.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1446
Alignment locationchr5:1395559..1397198 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1395559..1397198 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G05250.1 vs.
Match: XP_005853981.1 (ATP-binding cassette, subfamily C (CFTR/MRP), member 1 [Nannochloropsis gaditana CCMP526]; EKU22379.1 ATP-binding cassette, subfamily C (CFTR/MRP), member 1 [Nannochloropsis gaditana CCMP526]; EWM27876.1 Ankyrin repeat-containing domain protein [Nannochloropsis gaditana])

HSP 1 Score: 430.6 bits (1106), Expect = 5.600e-117
Identity = 249/426 (58.45%), Postives = 300/426 (70.42%), Query Frame = 0 
Query:    9 KEKGFLASFLFHKPTREELLRKGDLPSLARLLRKQGPEKFLNTPLDGDGNTPLIMAAGRGSYRVVQWLVSQKGINLDARNRFGWTALYEAAGTGHRHVLERLVQAGADPTIPATSWPRHVPSQMAQQMGWNACVEVLVRAEKNWKALQRRKAAMQEEETKAESVLGTSQTPATAAAAAAAAREATGEKGSSEKNEGDLSSSSSISSSLAVAAGTAGKTRNGDNNGFFSSSSSTSNGKDVAAAAAGGTAKEAVSSAIITPSPPTSPSSFIFSSSSSSSSSPINPVSASDA-VAPPSAPAPAASDKVKEETVAALASPPPPTPTNKTDLPACLRWQVEEGVGEGGHVG--FGWEEMEDDWLEVHPAVFSKRGPRVGRRRREGTGAGSWVLGYIWRNKTLTNLAMGRTSGRLKARAGSRKKPRWVVRKE 432
            K++G   S L  KP+REEL+RKGDLP+L +LLRKQG +  LN PLD +GNTPLI+AA +GS++VVQWL++Q+G+N++ARNRFGWTALYEAAGTGHRH+L+RLVQAGADPTIPATSWPRH PSQMA+QMGWNACV+VLV+AEK W   ++       EETK E V+G S+ PA            +G  G  EK   +LSSS+   + LA     A  TR G      S  SST+       + +GG+ ++  SS     SPP+SPSSF FSSSSSS      P+S+  A +A P+  A + +     E    L+  PP TP+ KTDLPACLRWQVEEGVGEGGH G    WEE E+DWLEVHPAVFSKRGPRVGRRRREG GAGSWVLG + RNKTL NLA GRT  R+KARAGSR+ PRWVV+KE
Sbjct:    6 KKQGLFLSLLSRKPSREELVRKGDLPALTKLLRKQGVDNTLNAPLDHEGNTPLILAARKGSFKVVQWLLAQEGLNMNARNRFGWTALYEAAGTGHRHILDRLVQAGADPTIPATSWPRHTPSQMARQMGWNACVDVLVKAEKMWAERKKEDRETDREETKEEEVMGLSEHPA-----------LSGTVGGDEKTTAELSSST--GTKLA-----APGTRMGKEVAARSLPSSTTR----PVSESGGSTEKPDSSTAGPSSPPSSPSSFTFSSSSSS------PLSSGVARLAGPTGVASSKTSSNHVEATQTLSPAPPTTPSKKTDLPACLRWQVEEGVGEGGHEGRWGAWEEAEEDWLEVHPAVFSKRGPRVGRRRREGGGAGSWVLGCLRRNKTLMNLATGRTGERIKARAGSRRNPRWVVQKE 403
The following BLAST results are available for this feature:
BLAST of NO05G05250.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853981.15.600e-11758.45ATP-binding cassette, subfamily C (CFTR/MRP), memb... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G05250NO05G05250Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G05250.1NO05G05250.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G05250.1.cds1NO05G05250.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G05250.1.cds2NO05G05250.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G05250.1 ID=NO05G05250.1|Name=NO05G05250.1|organism=Nannochloropsis oceanica|type=mRNA|length=1446bp
ACAGGCAAGTTCAGCTTCGACCTCCCTCCCTTGTCTCACTGATATCCATC
CCACTGAGCCCACACGCCCAGCCCGCCGCCGCTGCCCGCAGCAGCGGCAA
TAGGAGCAACACCAGCTGAAAGCTTCAATAACTTGTGTGCGAGCAAGTCC
ATGTCGCATATTCGGAACTGCCAGAAGGAAAAGGGCTTCTTGGCCTCTTT
CCTCTTCCACAAGCCCACCCGGGAGGAGCTCTTGCGCAAGGGCGATTTGC
CATCCCTGGCCCGGTTGCTGCGGAAGCAAGGGCCCGAAAAATTCTTGAAT
ACCCCTCTGGACGGAGATGGGAACACACCCTTGATCATGGCGGCGGGCCG
GGGATCCTACCGCGTGGTGCAATGGCTGGTGTCTCAAAAGGGGATCAACT
TGGATGCTCGCAACAGATTCGGATGGACCGCCTTGTACGAAGCTGCGGGC
ACGGGCCATCGACATGTGCTTGAGCGACTGGTACAGGCAGGAGCAGACCC
CACCATCCCTGCGACATCGTGGCCCAGGCATGTCCCTTCGCAGATGGCGC
AGCAGATGGGTTGGAACGCGTGTGTGGAGGTGTTGGTCCGGGCCGAGAAA
AATTGGAAGGCTTTGCAGAGACGGAAAGCGGCGATGCAGGAGGAGGAGAC
CAAGGCAGAGAGTGTACTGGGAACATCACAGACTCCAGCAACAGCAGCAG
CAGCAGCAGCAGCAGCAAGAGAGGCGACGGGGGAGAAGGGCTCGTCGGAG
AAAAACGAGGGCGACCTTTCTTCCTCCTCCTCTATCTCGTCCTCATTGGC
TGTAGCTGCTGGAACGGCAGGAAAGACGAGGAACGGCGACAACAATGGCT
TTTTCTCCTCCTCCTCGTCTACGAGCAACGGTAAAGATGTGGCAGCAGCA
GCAGCAGGAGGAACAGCAAAGGAGGCCGTCTCCAGCGCCATTATTACTCC
CTCCCCTCCTACCTCCCCTTCTTCCTTCATTTTTTCCTCGTCTTCCTCCT
CCTCCTCCAGCCCCATCAATCCTGTCTCTGCTTCTGACGCCGTAGCTCCT
CCTTCTGCTCCTGCTCCTGCAGCGTCTGACAAGGTCAAGGAAGAGACAGT
AGCAGCACTGGCCAGCCCCCCTCCCCCCACCCCCACCAACAAGACAGATC
TCCCTGCATGCCTTCGATGGCAGGTGGAGGAGGGCGTGGGTGAGGGAGGG
CACGTAGGGTTTGGGTGGGAGGAAATGGAAGATGATTGGTTGGAGGTGCA
CCCGGCTGTCTTTTCGAAGAGGGGGCCGAGGGTGGGGAGGCGAAGGAGGG
AGGGGACAGGGGCGGGCTCGTGGGTACTGGGGTACATATGGAGGAATAAG
ACGTTGACAAACCTGGCGATGGGGAGGACGAGCGGCCGGCTCAAGGCCCG
GGCGGGCTCGAGGAAAAAGCCGCGGTGGGTGGTGCGGAAGGAGTAG
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protein sequence of NO05G05250.1

>NO05G05250.1-protein ID=NO05G05250.1-protein|Name=NO05G05250.1|organism=Nannochloropsis oceanica|type=polypeptide|length=432bp
MSHIRNCQKEKGFLASFLFHKPTREELLRKGDLPSLARLLRKQGPEKFLN
TPLDGDGNTPLIMAAGRGSYRVVQWLVSQKGINLDARNRFGWTALYEAAG
TGHRHVLERLVQAGADPTIPATSWPRHVPSQMAQQMGWNACVEVLVRAEK
NWKALQRRKAAMQEEETKAESVLGTSQTPATAAAAAAAAREATGEKGSSE
KNEGDLSSSSSISSSLAVAAGTAGKTRNGDNNGFFSSSSSTSNGKDVAAA
AAGGTAKEAVSSAIITPSPPTSPSSFIFSSSSSSSSSPINPVSASDAVAP
PSAPAPAASDKVKEETVAALASPPPPTPTNKTDLPACLRWQVEEGVGEGG
HVGFGWEEMEDDWLEVHPAVFSKRGPRVGRRRREGTGAGSWVLGYIWRNK
TLTNLAMGRTSGRLKARAGSRKKPRWVVRKE*
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mRNA from alignment at chr5:1395559..1397198+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G05250.1 ID=NO05G05250.1|Name=NO05G05250.1|organism=Nannochloropsis oceanica|type=mRNA|length=1640bp|location=Sequence derived from alignment at chr5:1395559..1397198+ (Nannochloropsis oceanica)
ACAGGCAAGTTCAGCTTCGACCTCCCTCCCTTGTCTCACTGATATCCATC
CCACTGAGCCCACACGCCCAGCCCGCCGCCGCTGCCCGCAGCAGCGGCAA
TAGGAGCAACACCAGCTGAAAGCTTCAATAACTTGTGTGCGAGCAAGTCC
ATGTCGCATATTCGGAACTGCCAGAAGGAAAAGGGCTTCTTGGCCTCTTT
CCTCTTCCACAAGCCCACCCGGGAGGAGCTCTTGCGCAAGGGCGATTTGC
CATCCCTGGCCCGGTTGCTGCGGAAGCAAGGGCCCGAAAAATTCTTGAAT
ACCCCTCTGGACGGAGATGGGAACACACCCTTGATCATGGCGGCGGGCCG
GGGATCCTACCGCGTGGTGCAATGGCTGGTGTCTCAAAAGGGGATCAACT
TGGATGCTCGCAACAGGTACGCAAGGGAGGATGGAAGAGGTGGGGAGAGC
GTATGTATGGGGAGGGAACGATTTGCATGCTGGCTATAGTGTTCGTGGTA
GAAACCCCAGAAGGAACAGGTACCGCATCTCTGGGTCTTCTCGCGTTCAA
CTGATCCCTCCCGCCCTCCCTCCCGCCCTCCCTCCCTCCCTCCATCTTCC
TATTCCCTAGATTCGGATGGACCGCCTTGTACGAAGCTGCGGGCACGGGC
CATCGACATGTGCTTGAGCGACTGGTACAGGCAGGAGCAGACCCCACCAT
CCCTGCGACATCGTGGCCCAGGCATGTCCCTTCGCAGATGGCGCAGCAGA
TGGGTTGGAACGCGTGTGTGGAGGTGTTGGTCCGGGCCGAGAAAAATTGG
AAGGCTTTGCAGAGACGGAAAGCGGCGATGCAGGAGGAGGAGACCAAGGC
AGAGAGTGTACTGGGAACATCACAGACTCCAGCAACAGCAGCAGCAGCAG
CAGCAGCAGCAAGAGAGGCGACGGGGGAGAAGGGCTCGTCGGAGAAAAAC
GAGGGCGACCTTTCTTCCTCCTCCTCTATCTCGTCCTCATTGGCTGTAGC
TGCTGGAACGGCAGGAAAGACGAGGAACGGCGACAACAATGGCTTTTTCT
CCTCCTCCTCGTCTACGAGCAACGGTAAAGATGTGGCAGCAGCAGCAGCA
GGAGGAACAGCAAAGGAGGCCGTCTCCAGCGCCATTATTACTCCCTCCCC
TCCTACCTCCCCTTCTTCCTTCATTTTTTCCTCGTCTTCCTCCTCCTCCT
CCAGCCCCATCAATCCTGTCTCTGCTTCTGACGCCGTAGCTCCTCCTTCT
GCTCCTGCTCCTGCAGCGTCTGACAAGGTCAAGGAAGAGACAGTAGCAGC
ACTGGCCAGCCCCCCTCCCCCCACCCCCACCAACAAGACAGATCTCCCTG
CATGCCTTCGATGGCAGGTGGAGGAGGGCGTGGGTGAGGGAGGGCACGTA
GGGTTTGGGTGGGAGGAAATGGAAGATGATTGGTTGGAGGTGCACCCGGC
TGTCTTTTCGAAGAGGGGGCCGAGGGTGGGGAGGCGAAGGAGGGAGGGGA
CAGGGGCGGGCTCGTGGGTACTGGGGTACATATGGAGGAATAAGACGTTG
ACAAACCTGGCGATGGGGAGGACGAGCGGCCGGCTCAAGGCCCGGGCGGG
CTCGAGGAAAAAGCCGCGGTGGGTGGTGCGGAAGGAGTAG
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Coding sequence (CDS) from alignment at chr5:1395559..1397198+

>NO05G05250.1 ID=NO05G05250.1|Name=NO05G05250.1|organism=Nannochloropsis oceanica|type=CDS|length=1296bp|location=Sequence derived from alignment at chr5:1395559..1397198+ (Nannochloropsis oceanica)
ATGTCGCATATTCGGAACTGCCAGAAGGAAAAGGGCTTCTTGGCCTCTTT
CCTCTTCCACAAGCCCACCCGGGAGGAGCTCTTGCGCAAGGGCGATTTGC
CATCCCTGGCCCGGTTGCTGCGGAAGCAAGGGCCCGAAAAATTCTTGAAT
ACCCCTCTGGACGGAGATGGGAACACACCCTTGATCATGGCGGCGGGCCG
GGGATCCTACCGCGTGGTGCAATGGCTGGTGTCTCAAAAGGGGATCAACT
TGGATGCTCGCAACAGATTCGGATGGACCGCCTTGTACGAAGCTGCGGGC
ACGGGCCATCGACATGTGCTTGAGCGACTGGTACAGGCAGGAGCAGACCC
CACCATCCCTGCGACATCGTGGCCCAGGCATGTCCCTTCGCAGATGGCGC
AGCAGATGGGTTGGAACGCGTGTGTGGAGGTGTTGGTCCGGGCCGAGAAA
AATTGGAAGGCTTTGCAGAGACGGAAAGCGGCGATGCAGGAGGAGGAGAC
CAAGGCAGAGAGTGTACTGGGAACATCACAGACTCCAGCAACAGCAGCAG
CAGCAGCAGCAGCAGCAAGAGAGGCGACGGGGGAGAAGGGCTCGTCGGAG
AAAAACGAGGGCGACCTTTCTTCCTCCTCCTCTATCTCGTCCTCATTGGC
TGTAGCTGCTGGAACGGCAGGAAAGACGAGGAACGGCGACAACAATGGCT
TTTTCTCCTCCTCCTCGTCTACGAGCAACGGTAAAGATGTGGCAGCAGCA
GCAGCAGGAGGAACAGCAAAGGAGGCCGTCTCCAGCGCCATTATTACTCC
CTCCCCTCCTACCTCCCCTTCTTCCTTCATTTTTTCCTCGTCTTCCTCCT
CCTCCTCCAGCCCCATCAATCCTGTCTCTGCTTCTGACGCCGTAGCTCCT
CCTTCTGCTCCTGCTCCTGCAGCGTCTGACAAGGTCAAGGAAGAGACAGT
AGCAGCACTGGCCAGCCCCCCTCCCCCCACCCCCACCAACAAGACAGATC
TCCCTGCATGCCTTCGATGGCAGGTGGAGGAGGGCGTGGGTGAGGGAGGG
CACGTAGGGTTTGGGTGGGAGGAAATGGAAGATGATTGGTTGGAGGTGCA
CCCGGCTGTCTTTTCGAAGAGGGGGCCGAGGGTGGGGAGGCGAAGGAGGG
AGGGGACAGGGGCGGGCTCGTGGGTACTGGGGTACATATGGAGGAATAAG
ACGTTGACAAACCTGGCGATGGGGAGGACGAGCGGCCGGCTCAAGGCCCG
GGCGGGCTCGAGGAAAAAGCCGCGGTGGGTGGTGCGGAAGGAGTAG
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Synonyms
Publications