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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr5 | genome | chr5:1378176..1381090 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO05G05220.1 vs.
Match: CBN80135.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 107.1 bits (266), Expect = 2.900e-19 Identity = 56/149 (37.58%), Postives = 87/149 (58.39%), Query Frame = 0
Query: 592 ASALANKNQAQNRVLLEGNVELWLPSRFLGSLYKSWVPFHLVLYAGTKEIRLYQSSIPSAWGIIPLHEKGTLELRLLEKIECPTDPQWGGRRFDLVVRASSSAAVDAKYPGLGVYPGDEKRATHTARYNFRSQTAQNRLLWVSLITAVL 741
A ++ + +LLEG+++ + P G W + VLYA E+R Y++ +AWG IPL E+G++ LRL+ KIE P+D ++ G RFDLVV ++++PGL + PG E R T + F + AQ RLLWV++I A++
Sbjct: 673 AGVSETRHSTKQGILLEGDLQKFSPESMRGV---RWHKRYFVLYACACELRYYRTHAEAAWGRIPLGERGSIPLRLVVKIEQPSDKKYRGCRFDLVVLHKG----ESRHPGLHIRPGQESRVRTTKTFKFNAADAQQRLLWVTVIEALM 814
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO05G05220.1 ID=NO05G05220.1|Name=NO05G05220.1|organism=Nannochloropsis oceanica|type=mRNA|length=2915bp GCGTCTTGTTCGTGTATTTTTTGCTTTTATACCACGGCCCTCACCTTTTT CACACGACATGCGGTCTGAGAGGTCGAAAAATGTGTGCCTCAAAATGTGC GCCACACGAAACAGAAAATGTGCAGAGCAGACACATCAAGCCGCCGCGTC AATCCTACCACCACTTACGAGTCAAAGCATAGCAAGAGACATGAAAGAAG CCGCTCACTTTTTCTCCTTCACTTTCCTCCCCTTTCCCCCGTCCAGCCCA AACGAAAATGGGGGAGGACGACGACCCACAAGCACTCTTGGCCACATTTG ACAAGTGTCGTCGTCGGGCAGATGGCACCGTAGATACCAACACCTTGGTG CATTGGCTATGTCTCGAGGTGGACGCACCCCAATTTGTCAAGAGGCTGGA GAGTCTGGGCAAGACTAACTACACCCGGGCCGAGTTTGAGCACCTTCTCT TGAATGGGGTCGTAAAAGGCAGCAGCGACGGCAGTAGAACTTCGCCTGAA AGCAGAGGGATGGATAATCATACGTTTCACACAAGTGCTGGCAGGAAGAA AAAGAAAGAGGCAAGGAAGCAGCGTCCATCTTCGCAAGGGCGGGAACGTC TGGTGGAGGAGGAAGTTGAGTCGCCTCATGCCAAGGAGCAACCCCCATCC AACGAAATTAATAAAACTTCGACCGAAAGTAATGCTAAGCATAACAATCA TCATCATCACCACCAGGGCCAGGGGGACATCGATTCCAAGACCAGAAAGG AAATGCACATCACCATCACCCCGCCACGATCCCTTTCTGCCAGCCCAGAA CGAACCTTTTCCACCCATTATTCGTTCTCGCCAAATCGTTCGAGGCATCA GCGTGTCATGAAGCAAGGTAGCAGCGCGCGTTTGGTCAGGCGTCAGCAGC AGCAACAGCATGCGTCCTCCAAATGGAGCGTAGATCAAGAGCAGGATGAG TACCCATATCACAGCAGCAGCGGCCTGAGCGAGTACAGCAGCAGCAGCAG CGGCAGCAGCGGCAGCAGCGAGGACGAAAAGGGAGCAAACGCCGGATACA GGCACCATCGACACGATTATTTCCACCGACACCATCGCAAGCCCTCCTCA AATACAAGCCGCCGTCGGAACGCCCGTTCCAAGCACTGGAGCCCGGGCCC TTCTCCCAACATCAGCCATTTCTTGAGCCCACTACTCACAGAAGGGATTC GGGATTTCTTTCGCCTAGGCGTTGGCAATGCCAGAAGCGGTACACACAGT AGCAGCAGCAGCCGCAACACCAGGCGCGGGAATCGTCGTGGCGCCGCGGG ACGAGATCAGGAGAGTGACGTTGAGGCGGCTCAAGACGGACGAACGAAAG CCACGGTCATAAGTCGAAAAGATCATGGATCTTGGACCGAGGCGTTGGCG CAGTCTAGATTGCTAAATGGAAAGAAGGGGAAAAGGAACGGAGGGGGCCC CGGAAGCTCATCATCCCACAAGACCAATCGTCGCGGCCACAGTCGCAGCC ACTGGCACCGTGATCACCGCAGCACATCTCCACCACCACATCCCTCATCC ACAGGAAATTACGTCTCGCATGACCAGCAGCAGGAGCGGCAGCCAGTTTC GTCCATTCACCACACGTCCTTTGGCTTTCCACAGACAACCACAGGCACAA ACCCAAGTCGCAGTTCTCTTTCCTATCGCCGAGAACAGCGTATAAATCAC CGCGAAGAAGAAAAACCAAATGGAGGCTTCAAGCCAACCATTACCAGGAG CTGTACTTTGACCAACCCCGCCCTGGACTCTGGCTCTCCCACTGCCTTTG ACCAAAGCTTGCCTTGGGACGGAAAGCTGGTCCCGCGAGACAGCGAAGCC GCTTCCCTGATCACAGGTCGCACCTACTGGCGTAGAAACAAAGAGGACAG TGATAGGCAAGCTTTGCAGTCGAGGACGGTGGACCCGGCCCTCCGCGCTG TGATGGATGGCCTCGACCACCTCTCTGGCACCCCCCGCCCCCAGCTCCAA GGGCTCCTGCTGACCGCACAAGACAATGCCGCCAGCGCTTTGGCCAACAA AAATCAGGCGCAGAACCGTGTTCTTCTTGAAGGCAATGTCGAATTGTGGT TACCGTCCCGTTTTTTGGGTAGTCTCTATAAATCCTGGGTGCCCTTTCAC CTTGTCCTTTATGCCGGCACCAAGGAGATTCGGCTCTACCAGTCCTCCAT CCCCTCCGCCTGGGGCATCATCCCCTTGCACGAGAAGGGCACTTTAGAGC TGCGACTGTTGGAAAAGATCGAGTGTCCGACCGACCCGCAGTGGGGTGGT CGGCGCTTTGACTTGGTTGTGCGAGCCTCATCGAGTGCTGCCGTCGATGC CAAGTATCCCGGCTTGGGAGTCTACCCTGGGGACGAAAAGAGGGCCACGC ACACTGCGCGGTACAATTTCCGGTCACAAACAGCCCAAAATCGACTGTTA TGGGTGTCTCTGATCACAGCCGTCTTGGACTCGTGCAGTGCGCCGCCGTC GTCTTCCTCTCGAGAGAGGACTTTGACGCTCGCTCCCCATGACCCTGCCC CAATATCGTTTTCATTACCCTGCCGAACATCCTCCGACGAAGTCACCTTA CCGTCTCCGCCTGTATCCTCGACTGCAGCAGCCATGTCGACGACCTCCTC GGCGGCATTGGCGCGGGGCGGCGTGGGCCTGGGTGGGAGCGGCGACTTAT TGAACTCGCCCAGCAGGACGCCTTTGCGGGCGACTTACTCTTCCCTTTCC GCAACAGCCTCGAGAAGCCTGCCAAGCGACAATGTCAAGGCCCTGGCCAC ACACCACATATCCTCAACATCCTCTCCTGCCTCACCACCACGAGGCGGCG CGGGGCAGGCCCCGGTGGGAGGGCGGTGATAATGAGGGGGGTTTCCTGGC GAGAAGAGGGCTATT back to topprotein sequence of NO05G05220.1 >NO05G05220.1-protein ID=NO05G05220.1-protein|Name=NO05G05220.1|organism=Nannochloropsis oceanica|type=polypeptide|length=874bp MGEDDDPQALLATFDKCRRRADGTVDTNTLVHWLCLEVDAPQFVKRLESL GKTNYTRAEFEHLLLNGVVKGSSDGSRTSPESRGMDNHTFHTSAGRKKKK EARKQRPSSQGRERLVEEEVESPHAKEQPPSNEINKTSTESNAKHNNHHH HHQGQGDIDSKTRKEMHITITPPRSLSASPERTFSTHYSFSPNRSRHQRV MKQGSSARLVRRQQQQQHASSKWSVDQEQDEYPYHSSSGLSEYSSSSSGS SGSSEDEKGANAGYRHHRHDYFHRHHRKPSSNTSRRRNARSKHWSPGPSP NISHFLSPLLTEGIRDFFRLGVGNARSGTHSSSSSRNTRRGNRRGAAGRD QESDVEAAQDGRTKATVISRKDHGSWTEALAQSRLLNGKKGKRNGGGPGS SSSHKTNRRGHSRSHWHRDHRSTSPPPHPSSTGNYVSHDQQQERQPVSSI HHTSFGFPQTTTGTNPSRSSLSYRREQRINHREEEKPNGGFKPTITRSCT LTNPALDSGSPTAFDQSLPWDGKLVPRDSEAASLITGRTYWRRNKEDSDR QALQSRTVDPALRAVMDGLDHLSGTPRPQLQGLLLTAQDNAASALANKNQ AQNRVLLEGNVELWLPSRFLGSLYKSWVPFHLVLYAGTKEIRLYQSSIPS AWGIIPLHEKGTLELRLLEKIECPTDPQWGGRRFDLVVRASSSAAVDAKY PGLGVYPGDEKRATHTARYNFRSQTAQNRLLWVSLITAVLDSCSAPPSSS SRERTLTLAPHDPAPISFSLPCRTSSDEVTLPSPPVSSTAAAMSTTSSAA LARGGVGLGGSGDLLNSPSRTPLRATYSSLSATASRSLPSDNVKALATHH ISSTSSPASPPRGGAGQAPVGGR* back to topmRNA from alignment at chr5:1378176..1381090- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO05G05220.1 ID=NO05G05220.1|Name=NO05G05220.1|organism=Nannochloropsis oceanica|type=mRNA|length=2915bp|location=Sequence derived from alignment at chr5:1378176..1381090- (Nannochloropsis oceanica) GCGTCTTGTTCGTGTATTTTTTGCTTTTATACCACGGCCCTCACCTTTTT
CACACGACATGCGGTCTGAGAGGTCGAAAAATGTGTGCCTCAAAATGTGC
GCCACACGAAACAGAAAATGTGCAGAGCAGACACATCAAGCCGCCGCGTC
AATCCTACCACCACTTACGAGTCAAAGCATAGCAAGAGACATGAAAGAAG
CCGCTCACTTTTTCTCCTTCACTTTCCTCCCCTTTCCCCCGTCCAGCCCA
AACGAAAATGGGGGAGGACGACGACCCACAAGCACTCTTGGCCACATTTG
ACAAGTGTCGTCGTCGGGCAGATGGCACCGTAGATACCAACACCTTGGTG
CATTGGCTATGTCTCGAGGTGGACGCACCCCAATTTGTCAAGAGGCTGGA
GAGTCTGGGCAAGACTAACTACACCCGGGCCGAGTTTGAGCACCTTCTCT
TGAATGGGGTCGTAAAAGGCAGCAGCGACGGCAGTAGAACTTCGCCTGAA
AGCAGAGGGATGGATAATCATACGTTTCACACAAGTGCTGGCAGGAAGAA
AAAGAAAGAGGCAAGGAAGCAGCGTCCATCTTCGCAAGGGCGGGAACGTC
TGGTGGAGGAGGAAGTTGAGTCGCCTCATGCCAAGGAGCAACCCCCATCC
AACGAAATTAATAAAACTTCGACCGAAAGTAATGCTAAGCATAACAATCA
TCATCATCACCACCAGGGCCAGGGGGACATCGATTCCAAGACCAGAAAGG
AAATGCACATCACCATCACCCCGCCACGATCCCTTTCTGCCAGCCCAGAA
CGAACCTTTTCCACCCATTATTCGTTCTCGCCAAATCGTTCGAGGCATCA
GCGTGTCATGAAGCAAGGTAGCAGCGCGCGTTTGGTCAGGCGTCAGCAGC
AGCAACAGCATGCGTCCTCCAAATGGAGCGTAGATCAAGAGCAGGATGAG
TACCCATATCACAGCAGCAGCGGCCTGAGCGAGTACAGCAGCAGCAGCAG
CGGCAGCAGCGGCAGCAGCGAGGACGAAAAGGGAGCAAACGCCGGATACA
GGCACCATCGACACGATTATTTCCACCGACACCATCGCAAGCCCTCCTCA
AATACAAGCCGCCGTCGGAACGCCCGTTCCAAGCACTGGAGCCCGGGCCC
TTCTCCCAACATCAGCCATTTCTTGAGCCCACTACTCACAGAAGGGATTC
GGGATTTCTTTCGCCTAGGCGTTGGCAATGCCAGAAGCGGTACACACAGT
AGCAGCAGCAGCCGCAACACCAGGCGCGGGAATCGTCGTGGCGCCGCGGG
ACGAGATCAGGAGAGTGACGTTGAGGCGGCTCAAGACGGACGAACGAAAG
CCACGGTCATAAGTCGAAAAGATCATGGATCTTGGACCGAGGCGTTGGCG
CAGTCTAGATTGCTAAATGGAAAGAAGGGGAAAAGGAACGGAGGGGGCCC
CGGAAGCTCATCATCCCACAAGACCAATCGTCGCGGCCACAGTCGCAGCC
ACTGGCACCGTGATCACCGCAGCACATCTCCACCACCACATCCCTCATCC
ACAGGAAATTACGTCTCGCATGACCAGCAGCAGGAGCGGCAGCCAGTTTC
GTCCATTCACCACACGTCCTTTGGCTTTCCACAGACAACCACAGGCACAA
ACCCAAGTCGCAGTTCTCTTTCCTATCGCCGAGAACAGCGTATAAATCAC
CGCGAAGAAGAAAAACCAAATGGAGGCTTCAAGCCAACCATTACCAGGAG
CTGTACTTTGACCAACCCCGCCCTGGACTCTGGCTCTCCCACTGCCTTTG
ACCAAAGCTTGCCTTGGGACGGAAAGCTGGTCCCGCGAGACAGCGAAGCC
GCTTCCCTGATCACAGGTCGCACCTACTGGCGTAGAAACAAAGAGGACAG
TGATAGGCAAGCTTTGCAGTCGAGGACGGTGGACCCGGCCCTCCGCGCTG
TGATGGATGGCCTCGACCACCTCTCTGGCACCCCCCGCCCCCAGCTCCAA
GGGCTCCTGCTGACCGCACAAGACAATGCCGCCAGCGCTTTGGCCAACAA
AAATCAGGCGCAGAACCGTGTTCTTCTTGAAGGCAATGTCGAATTGTGGT
TACCGTCCCGTTTTTTGGGTAGTCTCTATAAATCCTGGGTGCCCTTTCAC
CTTGTCCTTTATGCCGGCACCAAGGAGATTCGGCTCTACCAGTCCTCCAT
CCCCTCCGCCTGGGGCATCATCCCCTTGCACGAGAAGGGCACTTTAGAGC
TGCGACTGTTGGAAAAGATCGAGTGTCCGACCGACCCGCAGTGGGGTGGT
CGGCGCTTTGACTTGGTTGTGCGAGCCTCATCGAGTGCTGCCGTCGATGC
CAAGTATCCCGGCTTGGGAGTCTACCCTGGGGACGAAAAGAGGGCCACGC
ACACTGCGCGGTACAATTTCCGGTCACAAACAGCCCAAAATCGACTGTTA
TGGGTGTCTCTGATCACAGCCGTCTTGGACTCGTGCAGTGCGCCGCCGTC
GTCTTCCTCTCGAGAGAGGACTTTGACGCTCGCTCCCCATGACCCTGCCC
CAATATCGTTTTCATTACCCTGCCGAACATCCTCCGACGAAGTCACCTTA
CCGTCTCCGCCTGTATCCTCGACTGCAGCAGCCATGTCGACGACCTCCTC
GGCGGCATTGGCGCGGGGCGGCGTGGGCCTGGGTGGGAGCGGCGACTTAT
TGAACTCGCCCAGCAGGACGCCTTTGCGGGCGACTTACTCTTCCCTTTCC
GCAACAGCCTCGAGAAGCCTGCCAAGCGACAATGTCAAGGCCCTGGCCAC
ACACCACATATCCTCAACATCCTCTCCTGCCTCACCACCACGAGGCGGCG
CGGGGCAGGCCCCGGTGGGAGGGCGGTGATAATGAGGGGGGTTTCCTGGC
GAGAAGAGGGCTATT back to topCoding sequence (CDS) from alignment at chr5:1378176..1381090- >NO05G05220.1 ID=NO05G05220.1|Name=NO05G05220.1|organism=Nannochloropsis oceanica|type=CDS|length=2622bp|location=Sequence derived from alignment at chr5:1378176..1381090- (Nannochloropsis oceanica) ATGGGGGAGGACGACGACCCACAAGCACTCTTGGCCACATTTGACAAGTG TCGTCGTCGGGCAGATGGCACCGTAGATACCAACACCTTGGTGCATTGGC TATGTCTCGAGGTGGACGCACCCCAATTTGTCAAGAGGCTGGAGAGTCTG GGCAAGACTAACTACACCCGGGCCGAGTTTGAGCACCTTCTCTTGAATGG GGTCGTAAAAGGCAGCAGCGACGGCAGTAGAACTTCGCCTGAAAGCAGAG GGATGGATAATCATACGTTTCACACAAGTGCTGGCAGGAAGAAAAAGAAA GAGGCAAGGAAGCAGCGTCCATCTTCGCAAGGGCGGGAACGTCTGGTGGA GGAGGAAGTTGAGTCGCCTCATGCCAAGGAGCAACCCCCATCCAACGAAA TTAATAAAACTTCGACCGAAAGTAATGCTAAGCATAACAATCATCATCAT CACCACCAGGGCCAGGGGGACATCGATTCCAAGACCAGAAAGGAAATGCA CATCACCATCACCCCGCCACGATCCCTTTCTGCCAGCCCAGAACGAACCT TTTCCACCCATTATTCGTTCTCGCCAAATCGTTCGAGGCATCAGCGTGTC ATGAAGCAAGGTAGCAGCGCGCGTTTGGTCAGGCGTCAGCAGCAGCAACA GCATGCGTCCTCCAAATGGAGCGTAGATCAAGAGCAGGATGAGTACCCAT ATCACAGCAGCAGCGGCCTGAGCGAGTACAGCAGCAGCAGCAGCGGCAGC AGCGGCAGCAGCGAGGACGAAAAGGGAGCAAACGCCGGATACAGGCACCA TCGACACGATTATTTCCACCGACACCATCGCAAGCCCTCCTCAAATACAA GCCGCCGTCGGAACGCCCGTTCCAAGCACTGGAGCCCGGGCCCTTCTCCC AACATCAGCCATTTCTTGAGCCCACTACTCACAGAAGGGATTCGGGATTT CTTTCGCCTAGGCGTTGGCAATGCCAGAAGCGGTACACACAGTAGCAGCA GCAGCCGCAACACCAGGCGCGGGAATCGTCGTGGCGCCGCGGGACGAGAT CAGGAGAGTGACGTTGAGGCGGCTCAAGACGGACGAACGAAAGCCACGGT CATAAGTCGAAAAGATCATGGATCTTGGACCGAGGCGTTGGCGCAGTCTA GATTGCTAAATGGAAAGAAGGGGAAAAGGAACGGAGGGGGCCCCGGAAGC TCATCATCCCACAAGACCAATCGTCGCGGCCACAGTCGCAGCCACTGGCA CCGTGATCACCGCAGCACATCTCCACCACCACATCCCTCATCCACAGGAA ATTACGTCTCGCATGACCAGCAGCAGGAGCGGCAGCCAGTTTCGTCCATT CACCACACGTCCTTTGGCTTTCCACAGACAACCACAGGCACAAACCCAAG TCGCAGTTCTCTTTCCTATCGCCGAGAACAGCGTATAAATCACCGCGAAG AAGAAAAACCAAATGGAGGCTTCAAGCCAACCATTACCAGGAGCTGTACT TTGACCAACCCCGCCCTGGACTCTGGCTCTCCCACTGCCTTTGACCAAAG CTTGCCTTGGGACGGAAAGCTGGTCCCGCGAGACAGCGAAGCCGCTTCCC TGATCACAGGTCGCACCTACTGGCGTAGAAACAAAGAGGACAGTGATAGG CAAGCTTTGCAGTCGAGGACGGTGGACCCGGCCCTCCGCGCTGTGATGGA TGGCCTCGACCACCTCTCTGGCACCCCCCGCCCCCAGCTCCAAGGGCTCC TGCTGACCGCACAAGACAATGCCGCCAGCGCTTTGGCCAACAAAAATCAG GCGCAGAACCGTGTTCTTCTTGAAGGCAATGTCGAATTGTGGTTACCGTC CCGTTTTTTGGGTAGTCTCTATAAATCCTGGGTGCCCTTTCACCTTGTCC TTTATGCCGGCACCAAGGAGATTCGGCTCTACCAGTCCTCCATCCCCTCC GCCTGGGGCATCATCCCCTTGCACGAGAAGGGCACTTTAGAGCTGCGACT GTTGGAAAAGATCGAGTGTCCGACCGACCCGCAGTGGGGTGGTCGGCGCT TTGACTTGGTTGTGCGAGCCTCATCGAGTGCTGCCGTCGATGCCAAGTAT CCCGGCTTGGGAGTCTACCCTGGGGACGAAAAGAGGGCCACGCACACTGC GCGGTACAATTTCCGGTCACAAACAGCCCAAAATCGACTGTTATGGGTGT CTCTGATCACAGCCGTCTTGGACTCGTGCAGTGCGCCGCCGTCGTCTTCC TCTCGAGAGAGGACTTTGACGCTCGCTCCCCATGACCCTGCCCCAATATC GTTTTCATTACCCTGCCGAACATCCTCCGACGAAGTCACCTTACCGTCTC CGCCTGTATCCTCGACTGCAGCAGCCATGTCGACGACCTCCTCGGCGGCA TTGGCGCGGGGCGGCGTGGGCCTGGGTGGGAGCGGCGACTTATTGAACTC GCCCAGCAGGACGCCTTTGCGGGCGACTTACTCTTCCCTTTCCGCAACAG CCTCGAGAAGCCTGCCAAGCGACAATGTCAAGGCCCTGGCCACACACCAC ATATCCTCAACATCCTCTCCTGCCTCACCACCACGAGGCGGCGCGGGGCA GGCCCCGGTGGGAGGGCGGTGA back to top
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