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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr5 | genome | chr5:1355577..1358725 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO05G05160.2 vs.
Match: EWM27882.1 (Sugar transporter, conserved site [Nannochloropsis gaditana]) HSP 1 Score: 684.5 bits (1765), Expect = 2.400e-193 Identity = 356/488 (72.95%), Postives = 402/488 (82.38%), Query Frame = 0
Query: 1 MPEGTSGNVAVYAHSSE-DPMAAETMVHVAENV-SFTPPPLPERGSSQ------------SLDESLTRIKSALSVTVFTVPPPAPYCYWVAAMACLNSCNLGYDVGSVGGAALLMQEEFGWSSGQLSFYIGSMNFFCIAGALNAGYVCDTFGRRRTFTISCAIFIVGILIQILSHNFAFTMFGRILIGIGVGLGLAIDALYISEIAPPTHRGHLVSLSEVAINFGILLGFISDFAFLGVGPGWDWRLMLGLGMVMPTILVVLSLTVMPESPRWLLMQDRREEAMVVLRKTYVEGSDIEGVAAQIVQHIQADFEADAHSSWHVIFRPTRPVQMMLMAGIGLAACQQLTGCESLIYFSPVFMEKAGFVTRNAAFGMTILVGMSKMIFCIVAVVYVDQVGRRPLLFASTGGLFVFLVVMAVACRFDSLGWLMVLGMCAYVAFFSLGVGPLTWVGTTEVFSTRIRAKAMSLATSTNRLIGGVVASTTLPLVE 475
MP+GTS NVAVY HSS +P +T+VHVA+ S PP E S + SL S++RI+S LS VFT PPP+ Y Y+VAAMACLNSCNLGYDVGSVGGAALLMQEEF WSS LSFY+GSMNFFCI GALNAGY+CD GRRRTF+ISC IFI GILIQ+L+ F MFGR LIGIGVGLGLAIDALYI EIAPP+HRGHLVS SEVA+NFGI+LGF++D+A L VGPG DWRLMLGLGMVMP+IL+VLS TVMPESPRWLLM+ RREEA+ VLRK Y+ GS+++GV AQI HIQADF AD HSSWH IF PT PV++ML+AGIGLAACQQL+GCESLIYFSP FM AGFVT+NAAFGMTILVG SK +F I+A +YVDQ+GRRPLLF S GGLFVFL+VM +A +SL WLMV+GMC YVAFFSLGVGPLTWVGTTEVFSTRIRAKAMSLATS+NRLI G+VASTTLPLV+
Sbjct: 1 MPQGTSENVAVYVHSSSVNPSEGDTVVHVADTKPSANVPPDGEASSPEIPPTSLQDARGSSLSSSISRIESTLSDNVFTHPPPSKYSYFVAAMACLNSCNLGYDVGSVGGAALLMQEEFEWSSWDLSFYVGSMNFFCIFGALNAGYICDMVGRRRTFSISCVIFITGILIQVLARAFPLAMFGRFLIGIGVGLGLAIDALYIGEIAPPSHRGHLVSFSEVALNFGIMLGFVADYALLDVGPGLDWRLMLGLGMVMPSILIVLSFTVMPESPRWLLMRGRREEAVAVLRKVYMPGSNVDGVVAQIEHHIQADFAADKHSSWHAIFCPTPPVRLMLLAGIGLAACQQLSGCESLIYFSPEFMRDAGFVTKNAAFGMTILVGASKTLFTILAALYVDQMGRRPLLFISIGGLFVFLIVMGLAFERESLAWLMVVGMCLYVAFFSLGVGPLTWVGTTEVFSTRIRAKAMSLATSSNRLIAGIVASTTLPLVQ 488
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO05G05160.2 ID=NO05G05160.2|Name=NO05G05160.2|organism=Nannochloropsis oceanica|type=mRNA|length=2761bp
ACAGGTACAGTCCACACGCACGCACGACAACGCGGAGACGTTCGAAGACC
TCGCTCGGATCACCGTCGACCCCAGGACATAGCAGCAGAACGCCAGCCGG
TCCGTGGGCCATGCCGGAAGGAACCAGTGGCAATGTGGCGGTCTATGCGC
ACAGTTCGGAAGACCCGATGGCGGCCGAGACCATGGTGCATGTGGCCGAA
AACGTCTCTTTTACGCCCCCCCCGCTGCCTGAGAGGGGAAGCTCCCAGAG
CTTGGACGAGTCCTTGACACGGATCAAGTCAGCACTGAGCGTGACCGTGT
TTACCGTCCCCCCACCGGCACCCTACTGTTACTGGGTGGCCGCCATGGCT
TGCCTTAACAGCTGCAATCTTGGATACGACGTGGGCTCTGTCGGGGGAGC
CGCGTTGCTCATGCAGGAGGAGTTTGGCTGGTCGAGCGGGCAACTCAGCT
TTTATATTGGCTCCATGAATTTCTTCTGCATCGCTGGGGCCTTAAACGCC
GGGTATGTATGTGACACGTTTGGGCGGCGTCGGACCTTTACCATATCCTG
TGCCATCTTCATTGTGGGAATTTTGATTCAGATCTTGTCCCACAACTTCG
CCTTTACAATGTTCGGGCGAATTCTTATCGGGATTGGCGTCGGGCTCGGA
CTCGCCATTGACGCGCTTTACATCAGTGAAATCGCACCCCCCACCCACCG
AGGTCATCTCGTTTCTCTCTCTGAAGTAGCCATCAATTTCGGCATCCTCC
TAGGTTTTATCTCGGACTTCGCTTTCTTAGGCGTCGGGCCGGGTTGGGAC
TGGCGGCTCATGCTGGGGTTAGGGATGGTGATGCCCACCATCCTCGTTGT
CCTCTCCCTGACCGTTATGCCGGAGTCCCCCCGATGGCTCTTGATGCAGG
ATCGGAGGGAGGAGGCGATGGTGGTGCTGCGGAAAACGTACGTGGAAGGG
AGTGATATCGAGGGGGTAGCTGCGCAGATCGTGCAGCATATCCAGGCTGA
CTTCGAAGCCGACGCCCACAGCAGCTGGCATGTGATCTTTCGACCGACGC
GACCGGTTCAAATGATGTTAATGGCCGGCATTGGGCTGGCAGCATGCCAG
CAGCTGACGGGATGCGAGAGCTTGATTTATTTCTCCCCCGTTTTTATGGA
AAAAGCGGGCTTTGTGACCAGAAATGCGGCGTTTGGGATGACGATTCTGG
TGGGAATGAGTAAGATGATATTTTGCATCGTGGCGGTGGTGTACGTGGAT
CAGGTGGGGAGGCGGCCGTTGCTATTCGCATCGACCGGAGGCTTGTTCGT
CTTCCTGGTGGTTATGGCCGTGGCCTGTCGGTTCGACAGCTTGGGGTGGC
TAATGGTGCTGGGCATGTGCGCGTACGTGGCTTTCTTCTCCTTGGGTGTG
GGGCCCTTGACATGGGTGGGGACGACGGAGGTGTTTAGTACCCGGATCAG
AGCCAAAGCCATGTCCCTGGCCACGTCGACGAACCGGCTTATAGGGGGCG
TGGTAGCCAGCACGACGTTGCCTCTGGTGGAGGTACGTGTTATGAACGTG
TTGAAATAAAGGCGGTGGGGGGGTAGGAAGCACCAGGATGTGCTTCCACC
TGTCCTGGTTGGTGCTTTCTTCTTTTGTTTCCATAACTAAGCTTGGAATA
ATTCCAGTCCTCCAGCCATCCCGCTTTTCCTTTCCACCTACACATATATT
CATTGTGCGTATTTCTGTATCCCACGAATACACTCACCCTCAAGATTTAC
TTATAAACGGACATTACCACAGGTCTTGACCCCCACGGGCTACTTCTTGT
TCTACGCGGGCGTCACTCTCGGCACAGCCGCCTACCTGTACACTTTCTTT
CCCGAGACCAAGGGCAAGAGTTTGGAGCAGGTCGAGGAGTACTTCGAGGC
TGAGAGTGCAAAGGAGGAGGAGACGAAGAGGAGAAGAAGAGAGAAAAGGG
GAAAATGGGGAATGGTGGGAATGGGGAAAGGAGTGGGAGGAGGCAGGGCG
GCTGTGGACGGTACCCCGGAACAGCAGGAAGAGGAGTAGGAGGCAGGGGC
AGAAAGTGGTGGTGGAACAAGTGGCATTTGGTTTGACGTCTAATTTTAAT
TTTTTTAAATGGGAGGTTTCTTTAGGACGCATGCCGGAGCAGGTCGATAC
TCTACCGCGTAGTGCATTGCAACCCTATGGGCAGGGCGCTCATGTTGTAT
GCACAAACCATCTCGAGGATTGTGCGGCTTTGTCAACCTTGTGCGCGTCC
TTGACCTGGATAAATCGTAGAAAACTTCGATATATTTCGATTTGTCTCAT
CAGCATGATCTCTAGTAAATAATGAGGGTACAGCCTCCCCCTCCCTCCTC
CCCCTTCCTTCTCCTTCTCACATGTATCACGTTTGTACTACTCCTATAAA
TGTCTCGAATCTGTCTATAATTAAAAAAATATACGTTTTGTCGACTCGAA
TTGAATTTTATAAATATGCCGTTTTCCGCCGTCCTTAACTCTCTAATAAC
ATGGTGATGACGGCCTCGTGCGGTGTGTAGTTTTATGTGCATCCAGGCTT
GAGAATTGTTAATCTTAGAAAAAGTGAAGGGATGGTGTGACTTTATTAAG
GGCGTCTGAAATACGGGAAATGAAAGGCCAAAGGAAAGGAAAATTGATAG
AGGGGTGGCGAGGTCGACAAAAATAGTGGGTTTGAAAGGAATTACCAATC
TTTTGCTTTCGACTCTGTTCAATCCTAGTGTGCTTGGTGTCGTTTACTTC
GTTACGCACTC back to topprotein sequence of NO05G05160.2 >NO05G05160.2-protein ID=NO05G05160.2-protein|Name=NO05G05160.2|organism=Nannochloropsis oceanica|type=polypeptide|length=483bp
MPEGTSGNVAVYAHSSEDPMAAETMVHVAENVSFTPPPLPERGSSQSLDE
SLTRIKSALSVTVFTVPPPAPYCYWVAAMACLNSCNLGYDVGSVGGAALL
MQEEFGWSSGQLSFYIGSMNFFCIAGALNAGYVCDTFGRRRTFTISCAIF
IVGILIQILSHNFAFTMFGRILIGIGVGLGLAIDALYISEIAPPTHRGHL
VSLSEVAINFGILLGFISDFAFLGVGPGWDWRLMLGLGMVMPTILVVLSL
TVMPESPRWLLMQDRREEAMVVLRKTYVEGSDIEGVAAQIVQHIQADFEA
DAHSSWHVIFRPTRPVQMMLMAGIGLAACQQLTGCESLIYFSPVFMEKAG
FVTRNAAFGMTILVGMSKMIFCIVAVVYVDQVGRRPLLFASTGGLFVFLV
VMAVACRFDSLGWLMVLGMCAYVAFFSLGVGPLTWVGTTEVFSTRIRAKA
MSLATSTNRLIGGVVASTTLPLVEVRVMNVLK* back to topmRNA from alignment at chr5:1355577..1358725- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO05G05160.2 ID=NO05G05160.2|Name=NO05G05160.2|organism=Nannochloropsis oceanica|type=mRNA|length=3149bp|location=Sequence derived from alignment at chr5:1355577..1358725- (Nannochloropsis oceanica)
ACAGGTACAGTCCACACGCACGCACGACAACGCGGAGACGTTCGAAGACC
TCGCTCGGATCACCGTCGACCCCAGGACATAGCAGCAGAACGCCAGCCGG
TCCGTGGGCCATGCCGGAAGGAACCAGTGGCAATGTGGCGGTCTATGCGC
ACAGTTCGGAAGACCCGATGGCGGCCGAGACCATGGTGCATGTGGCCGAA
AACGTCTCTTTTACGCCCCCCCCGCTGCCTGAGAGGGGAAGCTCCCAGAG
CTTGGACGAGTCCTTGACACGGATCAAGTCAGCACTGAGCGTGACCGTGT
TTACCGTCCCCCCACCGGCACCCTACTGTTACTGGGTGGCCGCCATGGCT
TGCCTTAACAGCTGCAATCTTGGATACGACGTGGGCTCTGTCGGGGGAGC
CGCGTTGCTCATGCAGGAGGAGTTTGGCTGGTCGAGCGGGCAACTCAGCT
TTTATATTGGTATGTTGGTGGATTATTTTGAGACACGTAGTGGCATTTCG
TTGGGAAAGTCTCCTCTTTTCTGTCACTCATCACCACGCCCTTCGTCTTT
TTGTGTCCCTCCTTCCTTCAGGCTCCATGAATTTCTTCTGCATCGCTGGG
GCCTTAAACGCCGGGTATGTATGTGACACGTTTGGGCGGCGTCGGACCTT
TACCATATCCTGTGCCATCTTCATTGTGGGAATTTTGATTCAGGTAAGGA
GTAGAGGGACACATGAAGGAGTGAGTCGAGAAGAGATGGAGTCGTCGTTT
CTGCCAAGTGGTTTGTGGGAGGGGGATATGAATACAATAAATAATACTTT
TAAATAAAAGCACTAGGGAACATGCGTGGCATGGCTCATACTTTACCTCC
AGATTAATCGGCAGGGAAAAAAGTAGTCTAGCACGAGCATGAATAGAATT
CTTTCAATCCCTGATTCCCCTTCCTCTCTTCCGCCCTCTCTCCCTCTCTC
CCTCTCTCCCTCATCTCAGATCTTGTCCCACAACTTCGCCTTTACAATGT
TCGGGCGAATTCTTATCGGGATTGGCGTCGGGCTCGGACTCGCCATTGAC
GCGCTTTACATCAGTGAAATCGCACCCCCCACCCACCGAGGTCATCTCGT
TTCTCTCTCTGAAGTAGCCATCAATTTCGGCATCCTCCTAGGTTTTATCT
CGGACTTCGCTTTCTTAGGCGTCGGGCCGGGTTGGGACTGGCGGCTCATG
CTGGGGTTAGGGATGGTGATGCCCACCATCCTCGTTGTCCTCTCCCTGAC
CGTTATGCCGGAGTCCCCCCGATGGCTCTTGATGCAGGATCGGAGGGAGG
AGGCGATGGTGGTGCTGCGGAAAACGTACGTGGAAGGGAGTGATATCGAG
GGGGTAGCTGCGCAGATCGTGCAGCATATCCAGGCTGACTTCGAAGCCGA
CGCCCACAGCAGCTGGCATGTGATCTTTCGACCGACGCGACCGGTTCAAA
TGATGTTAATGGCCGGCATTGGGCTGGCAGCATGCCAGCAGCTGACGGGA
TGCGAGAGCTTGATTTATTTCTCCCCCGTTTTTATGGAAAAAGCGGGCTT
TGTGACCAGAAATGCGGCGTTTGGGATGACGATTCTGGTGGGAATGAGTA
AGATGATATTTTGCATCGTGGCGGTGGTGTACGTGGATCAGGTGGGGAGG
CGGCCGTTGCTATTCGCATCGACCGGAGGCTTGTTCGTCTTCCTGGTGGT
TATGGCCGTGGCCTGTCGGTTCGACAGCTTGGGGTGGCTAATGGTGCTGG
GCATGTGCGCGTACGTGGCTTTCTTCTCCTTGGGTGTGGGGCCCTTGACA
TGGGTGGGGACGACGGAGGTGTTTAGTACCCGGATCAGAGCCAAAGCCAT
GTCCCTGGCCACGTCGACGAACCGGCTTATAGGGGGCGTGGTAGCCAGCA
CGACGTTGCCTCTGGTGGAGGTACGTGTTATGAACGTGTTGAAATAAAGG
CGGTGGGGGGGTAGGAAGCACCAGGATGTGCTTCCACCTGTCCTGGTTGG
TGCTTTCTTCTTTTGTTTCCATAACTAAGCTTGGAATAATTCCAGTCCTC
CAGCCATCCCGCTTTTCCTTTCCACCTACACATATATTCATTGTGCGTAT
TTCTGTATCCCACGAATACACTCACCCTCAAGATTTACTTATAAACGGAC
ATTACCACAGGTCTTGACCCCCACGGGCTACTTCTTGTTCTACGCGGGCG
TCACTCTCGGCACAGCCGCCTACCTGTACACTTTCTTTCCCGAGACCAAG
GGCAAGAGTTTGGAGCAGGTCGAGGAGTACTTCGAGGCTGAGAGTGCAAA
GGAGGAGGAGACGAAGAGGAGAAGAAGAGAGAAAAGGGGAAAATGGGGAA
TGGTGGGAATGGGGAAAGGAGTGGGAGGAGGCAGGGCGGCTGTGGACGGT
ACCCCGGAACAGCAGGAAGAGGAGTAGGAGGCAGGGGCAGAAAGTGGTGG
TGGAACAAGTGGCATTTGGTTTGACGTCTAATTTTAATTTTTTTAAATGG
GAGGTTTCTTTAGGACGCATGCCGGAGCAGGTCGATACTCTACCGCGTAG
TGCATTGCAACCCTATGGGCAGGGCGCTCATGTTGTATGCACAAACCATC
TCGAGGATTGTGCGGCTTTGTCAACCTTGTGCGCGTCCTTGACCTGGATA
AATCGTAGAAAACTTCGATATATTTCGATTTGTCTCATCAGCATGATCTC
TAGTAAATAATGAGGGTACAGCCTCCCCCTCCCTCCTCCCCCTTCCTTCT
CCTTCTCACATGTATCACGTTTGTACTACTCCTATAAATGTCTCGAATCT
GTCTATAATTAAAAAAATATACGTTTTGTCGACTCGAATTGAATTTTATA
AATATGCCGTTTTCCGCCGTCCTTAACTCTCTAATAACATGGTGATGACG
GCCTCGTGCGGTGTGTAGTTTTATGTGCATCCAGGCTTGAGAATTGTTAA
TCTTAGAAAAAGTGAAGGGATGGTGTGACTTTATTAAGGGCGTCTGAAAT
ACGGGAAATGAAAGGCCAAAGGAAAGGAAAATTGATAGAGGGGTGGCGAG
GTCGACAAAAATAGTGGGTTTGAAAGGAATTACCAATCTTTTGCTTTCGA
CTCTGTTCAATCCTAGTGTGCTTGGTGTCGTTTACTTCGTTACGCACTC back to topCoding sequence (CDS) from alignment at chr5:1355577..1358725- >NO05G05160.2 ID=NO05G05160.2|Name=NO05G05160.2|organism=Nannochloropsis oceanica|type=CDS|length=1449bp|location=Sequence derived from alignment at chr5:1355577..1358725- (Nannochloropsis oceanica)
ATGCCGGAAGGAACCAGTGGCAATGTGGCGGTCTATGCGCACAGTTCGGA
AGACCCGATGGCGGCCGAGACCATGGTGCATGTGGCCGAAAACGTCTCTT
TTACGCCCCCCCCGCTGCCTGAGAGGGGAAGCTCCCAGAGCTTGGACGAG
TCCTTGACACGGATCAAGTCAGCACTGAGCGTGACCGTGTTTACCGTCCC
CCCACCGGCACCCTACTGTTACTGGGTGGCCGCCATGGCTTGCCTTAACA
GCTGCAATCTTGGATACGACGTGGGCTCTGTCGGGGGAGCCGCGTTGCTC
ATGCAGGAGGAGTTTGGCTGGTCGAGCGGGCAACTCAGCTTTTATATTGG
CTCCATGAATTTCTTCTGCATCGCTGGGGCCTTAAACGCCGGGTATGTAT
GTGACACGTTTGGGCGGCGTCGGACCTTTACCATATCCTGTGCCATCTTC
ATTGTGGGAATTTTGATTCAGATCTTGTCCCACAACTTCGCCTTTACAAT
GTTCGGGCGAATTCTTATCGGGATTGGCGTCGGGCTCGGACTCGCCATTG
ACGCGCTTTACATCAGTGAAATCGCACCCCCCACCCACCGAGGTCATCTC
GTTTCTCTCTCTGAAGTAGCCATCAATTTCGGCATCCTCCTAGGTTTTAT
CTCGGACTTCGCTTTCTTAGGCGTCGGGCCGGGTTGGGACTGGCGGCTCA
TGCTGGGGTTAGGGATGGTGATGCCCACCATCCTCGTTGTCCTCTCCCTG
ACCGTTATGCCGGAGTCCCCCCGATGGCTCTTGATGCAGGATCGGAGGGA
GGAGGCGATGGTGGTGCTGCGGAAAACGTACGTGGAAGGGAGTGATATCG
AGGGGGTAGCTGCGCAGATCGTGCAGCATATCCAGGCTGACTTCGAAGCC
GACGCCCACAGCAGCTGGCATGTGATCTTTCGACCGACGCGACCGGTTCA
AATGATGTTAATGGCCGGCATTGGGCTGGCAGCATGCCAGCAGCTGACGG
GATGCGAGAGCTTGATTTATTTCTCCCCCGTTTTTATGGAAAAAGCGGGC
TTTGTGACCAGAAATGCGGCGTTTGGGATGACGATTCTGGTGGGAATGAG
TAAGATGATATTTTGCATCGTGGCGGTGGTGTACGTGGATCAGGTGGGGA
GGCGGCCGTTGCTATTCGCATCGACCGGAGGCTTGTTCGTCTTCCTGGTG
GTTATGGCCGTGGCCTGTCGGTTCGACAGCTTGGGGTGGCTAATGGTGCT
GGGCATGTGCGCGTACGTGGCTTTCTTCTCCTTGGGTGTGGGGCCCTTGA
CATGGGTGGGGACGACGGAGGTGTTTAGTACCCGGATCAGAGCCAAAGCC
ATGTCCCTGGCCACGTCGACGAACCGGCTTATAGGGGGCGTGGTAGCCAG
CACGACGTTGCCTCTGGTGGAGGTACGTGTTATGAACGTGTTGAAATAA back to top
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