NO05G05110.1, NO05G05110.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G05110.1
Unique NameNO05G05110.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1437
Alignment locationchr5:1336391..1337827 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1336391..1337827 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO05G05110.1 vs.
Match: EWM27891.1 (cysteine proteinase [Nannochloropsis gaditana])

HSP 1 Score: 538.5 bits (1386), Expect = 2.100e-149
Identity = 280/480 (58.33%), Postives = 346/480 (72.08%), Query Frame = 0
Query:    8 SPLCGRLSFLCLIVPLVLLPLAGATVSTTAEFDAWMAQHHKMYGSADEKAQRYQHWLKAYERVQQHAHPHYSLGLNEMSDWSPAEHAQRLPRGGALDHFGSERRIGFHIPAGWRRKFVDEFRASHPRVFDGRDEPPPPHEVDWRDPRKNPKQVKGVTSIRNQLFCGGCYSFGVVAAVEGVVAADRGCLNALSDEQIIDCDAANNGCEGGDPQIALTYVVDQPLVAKSDYPFNAGKGHASQCALNEAVAPASQVQSYLYVQPCDETVLMQAVARGPVVVAIDAYCDAFMQYSGGVLSDSCVDVAGAAAAGTTSMDAVCEDSLNHAVAIVGYGADGNTGLKYWIIKNSWGTSWGERGFARVLRGGGTEGEEGKDCGVGCLEYYNFLPTGGVAFVNGTAFSDNDFPKGDMDEDAQRELFFMDILVGMAVVLAVLMVMSVP-----KLRRQQVQSG--------------AEPLLQLEDKEEED 469
            SP+   LS    +  +V  P   A      EF+ WM+ H K+Y SA E+ QR+Q+WL+AYERV++HAHPHYSLGLNEMSDWSP EHA+RL R    D  G+   +GF++ AGWRR+FV+EF ++HPR+FDGR +PPPP E+DWRD ++NPK+V GVT IRNQ +CGGCYS GVVAAVEGVVAADRG LN LSDEQI+DCD  N+GCEGGDPQ AL YV+ +PLV  +DYPF+AG G+  +CA  +A  PASQ++SYLYVQPCDE VLMQAVAR PVVVAIDA CDAF+QY+GGVLSDSCV+V      GT ++D VCED+LNHAVAIVGYG D  TGL YWIIKNSWG +WGE+GFARV+RG          CG+GCLEYYNFLPTGGVAF+NGT  SD++F  G     +Q +  F D+++G+A  LAV + +        +LRR   Q                 EPLLQLE++++ +
Sbjct:   12 SPVLASLSAFLFVFQVVAEPSIEALA--VREFEGWMSHHDKVYSSAGEREQRFQNWLQAYERVRRHAHPHYSLGLNEMSDWSPKEHAKRLHRR---DRHGNHM-LGFNLVAGWRRRFVEEFGSNHPRIFDGRSDPPPPPEIDWRDEKRNPKRVHGVTRIRNQYYCGGCYSLGVVAAVEGVVAADRGFLNELSDEQILDCDRVNHGCEGGDPQQALQYVMTEPLVLAADYPFDAGAGNVGECAAKQA-PPASQIRSYLYVQPCDERVLMQAVARSPVVVAIDASCDAFLQYAGGVLSDSCVNV----RLGTRAVDGVCEDALNHAVAIVGYGTDEKTGLDYWIIKNSWGVTWGEKGFARVMRGESEATGWTTKCGLGCLEYYNFLPTGGVAFMNGTLQSDDNFLHGVEGTASQAKENFGDMMLGLACALAVCLTILAAWGGQRQLRRMNSQEKESTVEDTGRANTFLREPLLQLEEEKKSN 480          
The following BLAST results are available for this feature:
BLAST of NO05G05110.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27891.12.100e-14958.33cysteine proteinase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G05110NO05G05110Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G05110.1NO05G05110.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G05110.1.cds1NO05G05110.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G05110.1 ID=NO05G05110.1|Name=NO05G05110.1|organism=Nannochloropsis oceanica|type=mRNA|length=1437bp
ATGAAACATGTGTTGTTGTCTTCACCCCTTTGTGGCCGTCTTTCCTTCCT
CTGCCTCATCGTGCCCCTCGTCCTTCTCCCACTCGCCGGGGCCACCGTCT
CCACGACCGCGGAGTTCGACGCTTGGATGGCCCAACACCATAAAATGTAT
GGCTCTGCGGACGAAAAGGCACAGCGATACCAGCATTGGCTCAAGGCCTA
TGAACGTGTGCAGCAGCACGCTCACCCGCACTACTCGTTAGGGCTGAATG
AGATGAGTGATTGGTCCCCTGCGGAGCATGCGCAACGCTTACCACGCGGC
GGTGCCCTCGACCACTTCGGGAGCGAGCGCCGTATTGGCTTTCACATTCC
GGCCGGGTGGCGTCGAAAATTTGTTGATGAGTTCCGGGCAAGCCATCCAC
GTGTCTTCGATGGGCGGGATGAGCCACCACCGCCCCATGAAGTAGATTGG
CGAGACCCCCGTAAGAACCCTAAGCAAGTCAAGGGCGTCACATCCATTCG
CAACCAGCTATTTTGTGGAGGCTGCTATAGCTTCGGTGTGGTGGCAGCTG
TGGAAGGGGTGGTTGCCGCCGACCGTGGGTGCTTGAATGCCCTGAGCGAC
GAGCAGATTATAGACTGCGATGCGGCAAACAACGGGTGCGAGGGAGGGGA
CCCTCAGATTGCCTTAACGTACGTCGTGGACCAACCACTAGTCGCGAAAA
GCGATTATCCCTTCAATGCCGGGAAAGGTCATGCAAGCCAGTGTGCGCTG
AATGAAGCAGTAGCCCCGGCGTCGCAAGTACAAAGTTATCTGTACGTGCA
GCCCTGCGATGAGACAGTGCTGATGCAGGCGGTGGCTAGGGGGCCGGTGG
TGGTGGCGATCGATGCCTACTGTGACGCCTTCATGCAATACTCGGGAGGC
GTGCTTTCAGATTCATGTGTGGACGTCGCAGGGGCTGCTGCTGCGGGGAC
GACGTCGATGGACGCCGTATGTGAGGATTCTTTGAACCACGCTGTGGCCA
TAGTGGGCTACGGGGCTGATGGAAACACGGGGTTGAAATACTGGATTATC
AAAAACAGCTGGGGCACGTCGTGGGGAGAAAGGGGATTTGCGCGCGTGTT
GCGTGGGGGGGGGACAGAAGGGGAGGAAGGTAAGGATTGTGGTGTAGGGT
GTTTGGAGTACTACAACTTCTTGCCCACGGGTGGCGTGGCGTTTGTGAAT
GGTACGGCGTTTTCGGACAACGACTTTCCCAAGGGGGATATGGACGAAGA
TGCTCAGAGAGAATTATTTTTCATGGACATTCTCGTGGGCATGGCGGTAG
TCTTGGCCGTGCTTATGGTGATGAGCGTGCCCAAATTGCGGCGTCAACAA
GTTCAGTCTGGCGCAGAGCCCTTACTGCAGTTGGAAGACAAGGAAGAAGA
GGATGACGAAAGGGGGGTCACAACTCTTGCAAACTAA
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protein sequence of NO05G05110.1

>NO05G05110.1-protein ID=NO05G05110.1-protein|Name=NO05G05110.1|organism=Nannochloropsis oceanica|type=polypeptide|length=479bp
MKHVLLSSPLCGRLSFLCLIVPLVLLPLAGATVSTTAEFDAWMAQHHKMY
GSADEKAQRYQHWLKAYERVQQHAHPHYSLGLNEMSDWSPAEHAQRLPRG
GALDHFGSERRIGFHIPAGWRRKFVDEFRASHPRVFDGRDEPPPPHEVDW
RDPRKNPKQVKGVTSIRNQLFCGGCYSFGVVAAVEGVVAADRGCLNALSD
EQIIDCDAANNGCEGGDPQIALTYVVDQPLVAKSDYPFNAGKGHASQCAL
NEAVAPASQVQSYLYVQPCDETVLMQAVARGPVVVAIDAYCDAFMQYSGG
VLSDSCVDVAGAAAAGTTSMDAVCEDSLNHAVAIVGYGADGNTGLKYWII
KNSWGTSWGERGFARVLRGGGTEGEEGKDCGVGCLEYYNFLPTGGVAFVN
GTAFSDNDFPKGDMDEDAQRELFFMDILVGMAVVLAVLMVMSVPKLRRQQ
VQSGAEPLLQLEDKEEEDDERGVTTLAN*
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mRNA from alignment at chr5:1336391..1337827-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G05110.1 ID=NO05G05110.1|Name=NO05G05110.1|organism=Nannochloropsis oceanica|type=mRNA|length=1437bp|location=Sequence derived from alignment at chr5:1336391..1337827- (Nannochloropsis oceanica)
ATGAAACATGTGTTGTTGTCTTCACCCCTTTGTGGCCGTCTTTCCTTCCT CTGCCTCATCGTGCCCCTCGTCCTTCTCCCACTCGCCGGGGCCACCGTCT CCACGACCGCGGAGTTCGACGCTTGGATGGCCCAACACCATAAAATGTAT GGCTCTGCGGACGAAAAGGCACAGCGATACCAGCATTGGCTCAAGGCCTA TGAACGTGTGCAGCAGCACGCTCACCCGCACTACTCGTTAGGGCTGAATG AGATGAGTGATTGGTCCCCTGCGGAGCATGCGCAACGCTTACCACGCGGC GGTGCCCTCGACCACTTCGGGAGCGAGCGCCGTATTGGCTTTCACATTCC GGCCGGGTGGCGTCGAAAATTTGTTGATGAGTTCCGGGCAAGCCATCCAC GTGTCTTCGATGGGCGGGATGAGCCACCACCGCCCCATGAAGTAGATTGG CGAGACCCCCGTAAGAACCCTAAGCAAGTCAAGGGCGTCACATCCATTCG CAACCAGCTATTTTGTGGAGGCTGCTATAGCTTCGGTGTGGTGGCAGCTG TGGAAGGGGTGGTTGCCGCCGACCGTGGGTGCTTGAATGCCCTGAGCGAC GAGCAGATTATAGACTGCGATGCGGCAAACAACGGGTGCGAGGGAGGGGA CCCTCAGATTGCCTTAACGTACGTCGTGGACCAACCACTAGTCGCGAAAA GCGATTATCCCTTCAATGCCGGGAAAGGTCATGCAAGCCAGTGTGCGCTG AATGAAGCAGTAGCCCCGGCGTCGCAAGTACAAAGTTATCTGTACGTGCA GCCCTGCGATGAGACAGTGCTGATGCAGGCGGTGGCTAGGGGGCCGGTGG TGGTGGCGATCGATGCCTACTGTGACGCCTTCATGCAATACTCGGGAGGC GTGCTTTCAGATTCATGTGTGGACGTCGCAGGGGCTGCTGCTGCGGGGAC GACGTCGATGGACGCCGTATGTGAGGATTCTTTGAACCACGCTGTGGCCA TAGTGGGCTACGGGGCTGATGGAAACACGGGGTTGAAATACTGGATTATC AAAAACAGCTGGGGCACGTCGTGGGGAGAAAGGGGATTTGCGCGCGTGTT GCGTGGGGGGGGGACAGAAGGGGAGGAAGGTAAGGATTGTGGTGTAGGGT GTTTGGAGTACTACAACTTCTTGCCCACGGGTGGCGTGGCGTTTGTGAAT GGTACGGCGTTTTCGGACAACGACTTTCCCAAGGGGGATATGGACGAAGA TGCTCAGAGAGAATTATTTTTCATGGACATTCTCGTGGGCATGGCGGTAG TCTTGGCCGTGCTTATGGTGATGAGCGTGCCCAAATTGCGGCGTCAACAA GTTCAGTCTGGCGCAGAGCCCTTACTGCAGTTGGAAGACAAGGAAGAAGA GGATGACGAAAGGGGGGTCACAACTCTTGCAAACTAA
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Coding sequence (CDS) from alignment at chr5:1336391..1337827-

>NO05G05110.1 ID=NO05G05110.1|Name=NO05G05110.1|organism=Nannochloropsis oceanica|type=CDS|length=1437bp|location=Sequence derived from alignment at chr5:1336391..1337827- (Nannochloropsis oceanica)
ATGAAACATGTGTTGTTGTCTTCACCCCTTTGTGGCCGTCTTTCCTTCCT
CTGCCTCATCGTGCCCCTCGTCCTTCTCCCACTCGCCGGGGCCACCGTCT
CCACGACCGCGGAGTTCGACGCTTGGATGGCCCAACACCATAAAATGTAT
GGCTCTGCGGACGAAAAGGCACAGCGATACCAGCATTGGCTCAAGGCCTA
TGAACGTGTGCAGCAGCACGCTCACCCGCACTACTCGTTAGGGCTGAATG
AGATGAGTGATTGGTCCCCTGCGGAGCATGCGCAACGCTTACCACGCGGC
GGTGCCCTCGACCACTTCGGGAGCGAGCGCCGTATTGGCTTTCACATTCC
GGCCGGGTGGCGTCGAAAATTTGTTGATGAGTTCCGGGCAAGCCATCCAC
GTGTCTTCGATGGGCGGGATGAGCCACCACCGCCCCATGAAGTAGATTGG
CGAGACCCCCGTAAGAACCCTAAGCAAGTCAAGGGCGTCACATCCATTCG
CAACCAGCTATTTTGTGGAGGCTGCTATAGCTTCGGTGTGGTGGCAGCTG
TGGAAGGGGTGGTTGCCGCCGACCGTGGGTGCTTGAATGCCCTGAGCGAC
GAGCAGATTATAGACTGCGATGCGGCAAACAACGGGTGCGAGGGAGGGGA
CCCTCAGATTGCCTTAACGTACGTCGTGGACCAACCACTAGTCGCGAAAA
GCGATTATCCCTTCAATGCCGGGAAAGGTCATGCAAGCCAGTGTGCGCTG
AATGAAGCAGTAGCCCCGGCGTCGCAAGTACAAAGTTATCTGTACGTGCA
GCCCTGCGATGAGACAGTGCTGATGCAGGCGGTGGCTAGGGGGCCGGTGG
TGGTGGCGATCGATGCCTACTGTGACGCCTTCATGCAATACTCGGGAGGC
GTGCTTTCAGATTCATGTGTGGACGTCGCAGGGGCTGCTGCTGCGGGGAC
GACGTCGATGGACGCCGTATGTGAGGATTCTTTGAACCACGCTGTGGCCA
TAGTGGGCTACGGGGCTGATGGAAACACGGGGTTGAAATACTGGATTATC
AAAAACAGCTGGGGCACGTCGTGGGGAGAAAGGGGATTTGCGCGCGTGTT
GCGTGGGGGGGGGACAGAAGGGGAGGAAGGTAAGGATTGTGGTGTAGGGT
GTTTGGAGTACTACAACTTCTTGCCCACGGGTGGCGTGGCGTTTGTGAAT
GGTACGGCGTTTTCGGACAACGACTTTCCCAAGGGGGATATGGACGAAGA
TGCTCAGAGAGAATTATTTTTCATGGACATTCTCGTGGGCATGGCGGTAG
TCTTGGCCGTGCTTATGGTGATGAGCGTGCCCAAATTGCGGCGTCAACAA
GTTCAGTCTGGCGCAGAGCCCTTACTGCAGTTGGAAGACAAGGAAGAAGA
GGATGACGAAAGGGGGGTCACAACTCTTGCAAACTAA
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Synonyms
Publications