|
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr5 | genome | chr5:1336391..1337827 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO05G05110.1 vs.
Match: EWM27891.1 (cysteine proteinase [Nannochloropsis gaditana]) HSP 1 Score: 538.5 bits (1386), Expect = 2.100e-149 Identity = 280/480 (58.33%), Postives = 346/480 (72.08%), Query Frame = 0
Query: 8 SPLCGRLSFLCLIVPLVLLPLAGATVSTTAEFDAWMAQHHKMYGSADEKAQRYQHWLKAYERVQQHAHPHYSLGLNEMSDWSPAEHAQRLPRGGALDHFGSERRIGFHIPAGWRRKFVDEFRASHPRVFDGRDEPPPPHEVDWRDPRKNPKQVKGVTSIRNQLFCGGCYSFGVVAAVEGVVAADRGCLNALSDEQIIDCDAANNGCEGGDPQIALTYVVDQPLVAKSDYPFNAGKGHASQCALNEAVAPASQVQSYLYVQPCDETVLMQAVARGPVVVAIDAYCDAFMQYSGGVLSDSCVDVAGAAAAGTTSMDAVCEDSLNHAVAIVGYGADGNTGLKYWIIKNSWGTSWGERGFARVLRGGGTEGEEGKDCGVGCLEYYNFLPTGGVAFVNGTAFSDNDFPKGDMDEDAQRELFFMDILVGMAVVLAVLMVMSVP-----KLRRQQVQSG--------------AEPLLQLEDKEEED 469
SP+ LS + +V P A EF+ WM+ H K+Y SA E+ QR+Q+WL+AYERV++HAHPHYSLGLNEMSDWSP EHA+RL R D G+ +GF++ AGWRR+FV+EF ++HPR+FDGR +PPPP E+DWRD ++NPK+V GVT IRNQ +CGGCYS GVVAAVEGVVAADRG LN LSDEQI+DCD N+GCEGGDPQ AL YV+ +PLV +DYPF+AG G+ +CA +A PASQ++SYLYVQPCDE VLMQAVAR PVVVAIDA CDAF+QY+GGVLSDSCV+V GT ++D VCED+LNHAVAIVGYG D TGL YWIIKNSWG +WGE+GFARV+RG CG+GCLEYYNFLPTGGVAF+NGT SD++F G +Q + F D+++G+A LAV + + +LRR Q EPLLQLE++++ +
Sbjct: 12 SPVLASLSAFLFVFQVVAEPSIEALA--VREFEGWMSHHDKVYSSAGEREQRFQNWLQAYERVRRHAHPHYSLGLNEMSDWSPKEHAKRLHRR---DRHGNHM-LGFNLVAGWRRRFVEEFGSNHPRIFDGRSDPPPPPEIDWRDEKRNPKRVHGVTRIRNQYYCGGCYSLGVVAAVEGVVAADRGFLNELSDEQILDCDRVNHGCEGGDPQQALQYVMTEPLVLAADYPFDAGAGNVGECAAKQA-PPASQIRSYLYVQPCDERVLMQAVARSPVVVAIDASCDAFLQYAGGVLSDSCVNV----RLGTRAVDGVCEDALNHAVAIVGYGTDEKTGLDYWIIKNSWGVTWGEKGFARVMRGESEATGWTTKCGLGCLEYYNFLPTGGVAFMNGTLQSDDNFLHGVEGTASQAKENFGDMMLGLACALAVCLTILAAWGGQRQLRRMNSQEKESTVEDTGRANTFLREPLLQLEEEKKSN 480
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO05G05110.1 ID=NO05G05110.1|Name=NO05G05110.1|organism=Nannochloropsis oceanica|type=mRNA|length=1437bp ATGAAACATGTGTTGTTGTCTTCACCCCTTTGTGGCCGTCTTTCCTTCCT CTGCCTCATCGTGCCCCTCGTCCTTCTCCCACTCGCCGGGGCCACCGTCT CCACGACCGCGGAGTTCGACGCTTGGATGGCCCAACACCATAAAATGTAT GGCTCTGCGGACGAAAAGGCACAGCGATACCAGCATTGGCTCAAGGCCTA TGAACGTGTGCAGCAGCACGCTCACCCGCACTACTCGTTAGGGCTGAATG AGATGAGTGATTGGTCCCCTGCGGAGCATGCGCAACGCTTACCACGCGGC GGTGCCCTCGACCACTTCGGGAGCGAGCGCCGTATTGGCTTTCACATTCC GGCCGGGTGGCGTCGAAAATTTGTTGATGAGTTCCGGGCAAGCCATCCAC GTGTCTTCGATGGGCGGGATGAGCCACCACCGCCCCATGAAGTAGATTGG CGAGACCCCCGTAAGAACCCTAAGCAAGTCAAGGGCGTCACATCCATTCG CAACCAGCTATTTTGTGGAGGCTGCTATAGCTTCGGTGTGGTGGCAGCTG TGGAAGGGGTGGTTGCCGCCGACCGTGGGTGCTTGAATGCCCTGAGCGAC GAGCAGATTATAGACTGCGATGCGGCAAACAACGGGTGCGAGGGAGGGGA CCCTCAGATTGCCTTAACGTACGTCGTGGACCAACCACTAGTCGCGAAAA GCGATTATCCCTTCAATGCCGGGAAAGGTCATGCAAGCCAGTGTGCGCTG AATGAAGCAGTAGCCCCGGCGTCGCAAGTACAAAGTTATCTGTACGTGCA GCCCTGCGATGAGACAGTGCTGATGCAGGCGGTGGCTAGGGGGCCGGTGG TGGTGGCGATCGATGCCTACTGTGACGCCTTCATGCAATACTCGGGAGGC GTGCTTTCAGATTCATGTGTGGACGTCGCAGGGGCTGCTGCTGCGGGGAC GACGTCGATGGACGCCGTATGTGAGGATTCTTTGAACCACGCTGTGGCCA TAGTGGGCTACGGGGCTGATGGAAACACGGGGTTGAAATACTGGATTATC AAAAACAGCTGGGGCACGTCGTGGGGAGAAAGGGGATTTGCGCGCGTGTT GCGTGGGGGGGGGACAGAAGGGGAGGAAGGTAAGGATTGTGGTGTAGGGT GTTTGGAGTACTACAACTTCTTGCCCACGGGTGGCGTGGCGTTTGTGAAT GGTACGGCGTTTTCGGACAACGACTTTCCCAAGGGGGATATGGACGAAGA TGCTCAGAGAGAATTATTTTTCATGGACATTCTCGTGGGCATGGCGGTAG TCTTGGCCGTGCTTATGGTGATGAGCGTGCCCAAATTGCGGCGTCAACAA GTTCAGTCTGGCGCAGAGCCCTTACTGCAGTTGGAAGACAAGGAAGAAGA GGATGACGAAAGGGGGGTCACAACTCTTGCAAACTAA back to topprotein sequence of NO05G05110.1 >NO05G05110.1-protein ID=NO05G05110.1-protein|Name=NO05G05110.1|organism=Nannochloropsis oceanica|type=polypeptide|length=479bp MKHVLLSSPLCGRLSFLCLIVPLVLLPLAGATVSTTAEFDAWMAQHHKMY GSADEKAQRYQHWLKAYERVQQHAHPHYSLGLNEMSDWSPAEHAQRLPRG GALDHFGSERRIGFHIPAGWRRKFVDEFRASHPRVFDGRDEPPPPHEVDW RDPRKNPKQVKGVTSIRNQLFCGGCYSFGVVAAVEGVVAADRGCLNALSD EQIIDCDAANNGCEGGDPQIALTYVVDQPLVAKSDYPFNAGKGHASQCAL NEAVAPASQVQSYLYVQPCDETVLMQAVARGPVVVAIDAYCDAFMQYSGG VLSDSCVDVAGAAAAGTTSMDAVCEDSLNHAVAIVGYGADGNTGLKYWII KNSWGTSWGERGFARVLRGGGTEGEEGKDCGVGCLEYYNFLPTGGVAFVN GTAFSDNDFPKGDMDEDAQRELFFMDILVGMAVVLAVLMVMSVPKLRRQQ VQSGAEPLLQLEDKEEEDDERGVTTLAN* back to topmRNA from alignment at chr5:1336391..1337827- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO05G05110.1 ID=NO05G05110.1|Name=NO05G05110.1|organism=Nannochloropsis oceanica|type=mRNA|length=1437bp|location=Sequence derived from alignment at chr5:1336391..1337827- (Nannochloropsis oceanica) ATGAAACATGTGTTGTTGTCTTCACCCCTTTGTGGCCGTCTTTCCTTCCT
CTGCCTCATCGTGCCCCTCGTCCTTCTCCCACTCGCCGGGGCCACCGTCT
CCACGACCGCGGAGTTCGACGCTTGGATGGCCCAACACCATAAAATGTAT
GGCTCTGCGGACGAAAAGGCACAGCGATACCAGCATTGGCTCAAGGCCTA
TGAACGTGTGCAGCAGCACGCTCACCCGCACTACTCGTTAGGGCTGAATG
AGATGAGTGATTGGTCCCCTGCGGAGCATGCGCAACGCTTACCACGCGGC
GGTGCCCTCGACCACTTCGGGAGCGAGCGCCGTATTGGCTTTCACATTCC
GGCCGGGTGGCGTCGAAAATTTGTTGATGAGTTCCGGGCAAGCCATCCAC
GTGTCTTCGATGGGCGGGATGAGCCACCACCGCCCCATGAAGTAGATTGG
CGAGACCCCCGTAAGAACCCTAAGCAAGTCAAGGGCGTCACATCCATTCG
CAACCAGCTATTTTGTGGAGGCTGCTATAGCTTCGGTGTGGTGGCAGCTG
TGGAAGGGGTGGTTGCCGCCGACCGTGGGTGCTTGAATGCCCTGAGCGAC
GAGCAGATTATAGACTGCGATGCGGCAAACAACGGGTGCGAGGGAGGGGA
CCCTCAGATTGCCTTAACGTACGTCGTGGACCAACCACTAGTCGCGAAAA
GCGATTATCCCTTCAATGCCGGGAAAGGTCATGCAAGCCAGTGTGCGCTG
AATGAAGCAGTAGCCCCGGCGTCGCAAGTACAAAGTTATCTGTACGTGCA
GCCCTGCGATGAGACAGTGCTGATGCAGGCGGTGGCTAGGGGGCCGGTGG
TGGTGGCGATCGATGCCTACTGTGACGCCTTCATGCAATACTCGGGAGGC
GTGCTTTCAGATTCATGTGTGGACGTCGCAGGGGCTGCTGCTGCGGGGAC
GACGTCGATGGACGCCGTATGTGAGGATTCTTTGAACCACGCTGTGGCCA
TAGTGGGCTACGGGGCTGATGGAAACACGGGGTTGAAATACTGGATTATC
AAAAACAGCTGGGGCACGTCGTGGGGAGAAAGGGGATTTGCGCGCGTGTT
GCGTGGGGGGGGGACAGAAGGGGAGGAAGGTAAGGATTGTGGTGTAGGGT
GTTTGGAGTACTACAACTTCTTGCCCACGGGTGGCGTGGCGTTTGTGAAT
GGTACGGCGTTTTCGGACAACGACTTTCCCAAGGGGGATATGGACGAAGA
TGCTCAGAGAGAATTATTTTTCATGGACATTCTCGTGGGCATGGCGGTAG
TCTTGGCCGTGCTTATGGTGATGAGCGTGCCCAAATTGCGGCGTCAACAA
GTTCAGTCTGGCGCAGAGCCCTTACTGCAGTTGGAAGACAAGGAAGAAGA
GGATGACGAAAGGGGGGTCACAACTCTTGCAAACTAA back to topCoding sequence (CDS) from alignment at chr5:1336391..1337827- >NO05G05110.1 ID=NO05G05110.1|Name=NO05G05110.1|organism=Nannochloropsis oceanica|type=CDS|length=1437bp|location=Sequence derived from alignment at chr5:1336391..1337827- (Nannochloropsis oceanica) ATGAAACATGTGTTGTTGTCTTCACCCCTTTGTGGCCGTCTTTCCTTCCT CTGCCTCATCGTGCCCCTCGTCCTTCTCCCACTCGCCGGGGCCACCGTCT CCACGACCGCGGAGTTCGACGCTTGGATGGCCCAACACCATAAAATGTAT GGCTCTGCGGACGAAAAGGCACAGCGATACCAGCATTGGCTCAAGGCCTA TGAACGTGTGCAGCAGCACGCTCACCCGCACTACTCGTTAGGGCTGAATG AGATGAGTGATTGGTCCCCTGCGGAGCATGCGCAACGCTTACCACGCGGC GGTGCCCTCGACCACTTCGGGAGCGAGCGCCGTATTGGCTTTCACATTCC GGCCGGGTGGCGTCGAAAATTTGTTGATGAGTTCCGGGCAAGCCATCCAC GTGTCTTCGATGGGCGGGATGAGCCACCACCGCCCCATGAAGTAGATTGG CGAGACCCCCGTAAGAACCCTAAGCAAGTCAAGGGCGTCACATCCATTCG CAACCAGCTATTTTGTGGAGGCTGCTATAGCTTCGGTGTGGTGGCAGCTG TGGAAGGGGTGGTTGCCGCCGACCGTGGGTGCTTGAATGCCCTGAGCGAC GAGCAGATTATAGACTGCGATGCGGCAAACAACGGGTGCGAGGGAGGGGA CCCTCAGATTGCCTTAACGTACGTCGTGGACCAACCACTAGTCGCGAAAA GCGATTATCCCTTCAATGCCGGGAAAGGTCATGCAAGCCAGTGTGCGCTG AATGAAGCAGTAGCCCCGGCGTCGCAAGTACAAAGTTATCTGTACGTGCA GCCCTGCGATGAGACAGTGCTGATGCAGGCGGTGGCTAGGGGGCCGGTGG TGGTGGCGATCGATGCCTACTGTGACGCCTTCATGCAATACTCGGGAGGC GTGCTTTCAGATTCATGTGTGGACGTCGCAGGGGCTGCTGCTGCGGGGAC GACGTCGATGGACGCCGTATGTGAGGATTCTTTGAACCACGCTGTGGCCA TAGTGGGCTACGGGGCTGATGGAAACACGGGGTTGAAATACTGGATTATC AAAAACAGCTGGGGCACGTCGTGGGGAGAAAGGGGATTTGCGCGCGTGTT GCGTGGGGGGGGGACAGAAGGGGAGGAAGGTAAGGATTGTGGTGTAGGGT GTTTGGAGTACTACAACTTCTTGCCCACGGGTGGCGTGGCGTTTGTGAAT GGTACGGCGTTTTCGGACAACGACTTTCCCAAGGGGGATATGGACGAAGA TGCTCAGAGAGAATTATTTTTCATGGACATTCTCGTGGGCATGGCGGTAG TCTTGGCCGTGCTTATGGTGATGAGCGTGCCCAAATTGCGGCGTCAACAA GTTCAGTCTGGCGCAGAGCCCTTACTGCAGTTGGAAGACAAGGAAGAAGA GGATGACGAAAGGGGGGTCACAACTCTTGCAAACTAA back to top
|