NO05G05040.1, NO05G05040.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G05040.1
Unique NameNO05G05040.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1239
Alignment locationchr5:1314243..1315749 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1314243..1315749 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G05040.1 vs.
Match: EWM27895.1 (pyruvate kinase [Nannochloropsis gaditana])

HSP 1 Score: 313.9 bits (803), Expect = 5.900e-82
Identity = 159/266 (59.77%), Postives = 196/266 (73.68%), Query Frame = 0 
Query:   38 LATAAFTTTTTTTTTNPTIRRRRLLRRRAVNPEATMAGTVKLYDRHVFVLDPVRGHELWPTHVEESSFLLIADYKKAQKALTAAAGA-AGTVGKMFTLKFTVAEALGHALAAPSDEENPAITFKDHGLHTVLLFSPTAPSLAIRGLTKADIPTLVKLLVTKENYSAALPSALPSQVIIQPLPGKDLFVCAHASRDIRCKTCGPRLVGWLKEEAIKAAKSGSGEDEVRIWPSSHVGGHMHAGNVLVFPSGDWYGQVNDPAKAQLVLE 303
            +A A   T++++T T+P  RR R L R  +N  A MAGTV+ YDRHVF+LDP RGHE WPT++EES FLL+ADY +AQ+AL  AA + +G   + +TLKF VAEAL H L APSD+E+    FKD GLHT+L+FSP  PSLA+RGLTKADIP LVKLL +  +Y   LP+ALP+ V +Q L GKD+FVCAHASRD RCK CGP LV WL+EE         G+D+VR+WPSSHVGGH HA N LVFP GDWYG+VN   KA+++LE
Sbjct:   23 IAGAQSFTSSSSTDTSPATRRHRSLHR-PINDAAPMAGTVRRYDRHVFILDPFRGHENWPTYLEESRFLLVADYMQAQRALLMAAHSRSGEQERAWTLKFNVAEALNHPLGAPSDDEDAINAFKDRGLHTILIFSPCTPSLAVRGLTKADIPALVKLLHSVADYPTTLPTALPTHVAVQNLAGKDIFVCAHASRDARCKACGPPLVKWLREEV-----DMRGKDQVRVWPSSHVGGHAHAANALVFPGGDWYGRVNSKEKAKILLE 282
The following BLAST results are available for this feature:
BLAST of NO05G05040.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27895.15.900e-8259.77pyruvate kinase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G05040NO05G05040Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G05040.1NO05G05040.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G05040.1.cds1NO05G05040.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G05040.1.cds2NO05G05040.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G05040.1.cds3NO05G05040.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G05040.1 ID=NO05G05040.1|Name=NO05G05040.1|organism=Nannochloropsis oceanica|type=mRNA|length=1239bp
ACATCATACTGTGTATCCCTTGCTTCCTTTTACAACTCTTTGGTACAAAT
CCTAGAGACTGCAAACCGCCAAGAACGGGGATAAGGCGCGAGCCGTCTCG
TCGGCATCATCTCAGTCACAGCACCACCCACGGCCAGGCGAAAACGTCCT
CGCCTGTAGCGTTCAATGCTCTCCGCGACTTACTGCTGTTGTGTAATGCT
CACCATCAGCGTTGCTGCTCGGGCCTCCTTGTCCACCAACACCATGAGAC
GAACACTCCTTCTTCGTCCGTCGTCCCTTGCCACTGCCGCCTTTACAACT
ACCACCACTACCACCACCACCAACCCCACGATAAGGCGGCGTCGTCTCCT
TCGCCGTCGGGCCGTCAACCCCGAAGCAACCATGGCTGGTACTGTCAAGT
TGTATGATCGACATGTCTTCGTCTTGGATCCCGTGCGTGGCCACGAGCTC
TGGCCGACGCACGTGGAAGAGTCGTCTTTCTTGCTGATCGCCGACTACAA
GAAAGCACAAAAAGCGCTCACGGCGGCGGCCGGCGCCGCGGGGACGGTTG
GGAAAATGTTCACGCTTAAATTCACCGTCGCCGAGGCCTTGGGCCATGCG
TTGGCCGCCCCCAGTGATGAGGAAAATCCGGCAATAACCTTCAAAGACCA
TGGCCTGCACACAGTGCTCCTTTTCTCGCCCACGGCCCCCTCCCTCGCCA
TCCGCGGTCTCACGAAAGCTGACATTCCAACCCTGGTCAAGCTCCTCGTC
ACTAAGGAGAACTACTCAGCCGCCCTTCCTTCAGCCCTTCCTTCGCAGGT
CATTATCCAACCTCTACCCGGCAAGGATCTATTTGTTTGCGCGCATGCCT
CGCGGGACATTCGGTGCAAGACCTGTGGGCCACGGCTGGTGGGGTGGTTG
AAAGAAGAGGCTATCAAAGCGGCGAAATCGGGGTCTGGAGAAGACGAAGT
AAGGATCTGGCCATCGTCGCATGTGGGAGGACACATGCACGCGGGAAATG
TCTTGGTTTTCCCCAGCGGGGATTGGTATGGCCAGGTGAATGACCCTGCA
AAGGCCCAGTTGGTGCTGGAGAAGAAGGGCGTGGAGGACGACCTGAAAAA
GTTGTGGCGGGGTCGCATAGGACTGAATCAAATGCAGCAGGACGAGCTTG
TGTCTGAAGGCAATTAAAAAAGAATGGACATGTGATGAAAGAAAGCAAGA
GAACCAAATGGGTGGCGCCACTCGAGGTCCGGGAAATAG
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protein sequence of NO05G05040.1

>NO05G05040.1-protein ID=NO05G05040.1-protein|Name=NO05G05040.1|organism=Nannochloropsis oceanica|type=polypeptide|length=334bp
MLSATYCCCVMLTISVAARASLSTNTMRRTLLLRPSSLATAAFTTTTTTT
TTNPTIRRRRLLRRRAVNPEATMAGTVKLYDRHVFVLDPVRGHELWPTHV
EESSFLLIADYKKAQKALTAAAGAAGTVGKMFTLKFTVAEALGHALAAPS
DEENPAITFKDHGLHTVLLFSPTAPSLAIRGLTKADIPTLVKLLVTKENY
SAALPSALPSQVIIQPLPGKDLFVCAHASRDIRCKTCGPRLVGWLKEEAI
KAAKSGSGEDEVRIWPSSHVGGHMHAGNVLVFPSGDWYGQVNDPAKAQLV
LEKKGVEDDLKKLWRGRIGLNQMQQDELVSEGN*
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mRNA from alignment at chr5:1314243..1315749+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G05040.1 ID=NO05G05040.1|Name=NO05G05040.1|organism=Nannochloropsis oceanica|type=mRNA|length=1507bp|location=Sequence derived from alignment at chr5:1314243..1315749+ (Nannochloropsis oceanica)
ACATCATACTGTGTATCCCTTGCTTCCTTTTACAACTCTTTGGTACAAAT
CCTAGAGACTGCAAACCGCCAAGAACGGGGATAAGGCGCGAGCCGTCTCG
TCGGCATCATCTCAGTCACAGCACCACCCACGGCCAGGCGAAAACGTCCT
CGCCTGTAGCGTTCAATGCTCTCCGCGACTTACTGCTGTTGTGTAATGCT
CACCATCAGCGTTGCTGCTCGGGCCTCCTTGTCCACCAACACCATGAGAC
GAACACTCCTTCTTCGTCCGTCGTCCCTTGCCACTGCCGCCTTTACAACT
ACCACCACTACCACCACCACCAACCCCACGATAAGGCGGCGTCGTCTCCT
TCGCCGTCGGGCCGTCAACCCCGAAGCAACCATGGCTGGTACTGTCAAGT
TGTATGATCGACATGTACGTTTTGGATATTCCTTTTCTCGTCCTTTGGGA
TTTGTTTCCGGCGCTAAGCCTCCCATTCACATACATAGGTCTTCGTCTTG
GATCCCGTGCGTGGCCACGAGCTCTGGCCGACGCACGTGGAAGAGTCGTC
TTTCTTGCTGATCGCCGACTACAAGAAAGCACAAAAAGCGCTCACGGCGG
CGGCCGGCGCCGCGGGGACGGTTGGGAAAATGTTCACGCTTAAATTCACC
GTCGCCGAGGCCTTGGGCCATGCGTTGGCCGCCCCCAGTGATGGTATGTG
AACTGGATCTGTTAAACTCAACGATTCCTCTCTGGAAATGATCCCTCGCG
CATCTAGTTCTTCGGGGGGATGGGAGGTAGGAGGGGAGAAAGCTAAGACC
GAGACACATCAATCAACTGGACCGTATCACCAAGCACTTACATTTTTCGC
TCACTTAATGCCATAATCATCCATCCTTATTCTTCAGAGGAAAATCCGGC
AATAACCTTCAAAGACCATGGCCTGCACACAGTGCTCCTTTTCTCGCCCA
CGGCCCCCTCCCTCGCCATCCGCGGTCTCACGAAAGCTGACATTCCAACC
CTGGTCAAGCTCCTCGTCACTAAGGAGAACTACTCAGCCGCCCTTCCTTC
AGCCCTTCCTTCGCAGGTCATTATCCAACCTCTACCCGGCAAGGATCTAT
TTGTTTGCGCGCATGCCTCGCGGGACATTCGGTGCAAGACCTGTGGGCCA
CGGCTGGTGGGGTGGTTGAAAGAAGAGGCTATCAAAGCGGCGAAATCGGG
GTCTGGAGAAGACGAAGTAAGGATCTGGCCATCGTCGCATGTGGGAGGAC
ACATGCACGCGGGAAATGTCTTGGTTTTCCCCAGCGGGGATTGGTATGGC
CAGGTGAATGACCCTGCAAAGGCCCAGTTGGTGCTGGAGAAGAAGGGCGT
GGAGGACGACCTGAAAAAGTTGTGGCGGGGTCGCATAGGACTGAATCAAA
TGCAGCAGGACGAGCTTGTGTCTGAAGGCAATTAAAAAAGAATGGACATG
TGATGAAAGAAAGCAAGAGAACCAAATGGGTGGCGCCACTCGAGGTCCGG
GAAATAG
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Coding sequence (CDS) from alignment at chr5:1314243..1315749+

>NO05G05040.1 ID=NO05G05040.1|Name=NO05G05040.1|organism=Nannochloropsis oceanica|type=CDS|length=1002bp|location=Sequence derived from alignment at chr5:1314243..1315749+ (Nannochloropsis oceanica)
ATGCTCTCCGCGACTTACTGCTGTTGTGTAATGCTCACCATCAGCGTTGC
TGCTCGGGCCTCCTTGTCCACCAACACCATGAGACGAACACTCCTTCTTC
GTCCGTCGTCCCTTGCCACTGCCGCCTTTACAACTACCACCACTACCACC
ACCACCAACCCCACGATAAGGCGGCGTCGTCTCCTTCGCCGTCGGGCCGT
CAACCCCGAAGCAACCATGGCTGGTACTGTCAAGTTGTATGATCGACATG
TCTTCGTCTTGGATCCCGTGCGTGGCCACGAGCTCTGGCCGACGCACGTG
GAAGAGTCGTCTTTCTTGCTGATCGCCGACTACAAGAAAGCACAAAAAGC
GCTCACGGCGGCGGCCGGCGCCGCGGGGACGGTTGGGAAAATGTTCACGC
TTAAATTCACCGTCGCCGAGGCCTTGGGCCATGCGTTGGCCGCCCCCAGT
GATGAGGAAAATCCGGCAATAACCTTCAAAGACCATGGCCTGCACACAGT
GCTCCTTTTCTCGCCCACGGCCCCCTCCCTCGCCATCCGCGGTCTCACGA
AAGCTGACATTCCAACCCTGGTCAAGCTCCTCGTCACTAAGGAGAACTAC
TCAGCCGCCCTTCCTTCAGCCCTTCCTTCGCAGGTCATTATCCAACCTCT
ACCCGGCAAGGATCTATTTGTTTGCGCGCATGCCTCGCGGGACATTCGGT
GCAAGACCTGTGGGCCACGGCTGGTGGGGTGGTTGAAAGAAGAGGCTATC
AAAGCGGCGAAATCGGGGTCTGGAGAAGACGAAGTAAGGATCTGGCCATC
GTCGCATGTGGGAGGACACATGCACGCGGGAAATGTCTTGGTTTTCCCCA
GCGGGGATTGGTATGGCCAGGTGAATGACCCTGCAAAGGCCCAGTTGGTG
CTGGAGAAGAAGGGCGTGGAGGACGACCTGAAAAAGTTGTGGCGGGGTCG
CATAGGACTGAATCAAATGCAGCAGGACGAGCTTGTGTCTGAAGGCAATT
AA
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Synonyms
Publications