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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr5 | genome | chr5:1304201..1307329 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO05G05000.1 vs.
Match: EWM27894.1 (permease of the drug metabolite transporter superfamily [Nannochloropsis gaditana]) HSP 1 Score: 456.1 bits (1172), Expect = 1.700e-124 Identity = 316/587 (53.83%), Postives = 375/587 (63.88%), Query Frame = 0
Query: 35 MAFAFPNPSRVPLISTSLRSSSPSSAASPCSPHDTTSFTYRLPDLVPLGGEDARTSQHIMVHIKPGQSAQHRRFSMAPLAFSRSHSSSSDSSS----PARVKPLHS---EPQDEGSCVGTGSGSNSRE---ASSTLVPASSSPSSFPPPPSFSPSISSAERGATCVTETLSTTETDNGNP--SAADDADTTTLLSSSPSSS-------LPSFTITTSLAFLLLNIVTILWGSQHAIIKIALLSSPDSPGAFNFLRFGLASLCFLPWTPSLFPSSSPASLSGVVPGIE--EEERQGLWKAGAELGVWMFLGFALQALGLQCTSASRSGFLLYLNVKLVPLFAWLLLGRRPTLDVLGSALVAFVGTALLSFDGGSMPNVGDAWSLAAAAASAMFILRLEGAAKAYSLTRAKELNSATLWVTTLLCLGWMGVEYAFMLQHGGGGGGGGGGGMEGGGMEGGGGMLELVQGLWKEDWKQIVYLGVVTSAVCNWIQTLGQREVPAEKAALIYALDPVYGAAFARVLLGESEALGVRGYIGAGLVTAAAVFASLWARSGATGGGREQP--EGVEM-VKGGEEGRDGGERDAVRQ 598
M AF P P + + PSS ASP S S T+RLP L+ G+ AR + + ++ H R +P S S S++D S + LH Q EG+ N E ASS P+SSSPSS PSF PS + A A+ E D+ P S + T + L +SPS+S PSF IT +LA+LLLN+VT+LWGSQHA+IK AL SSPD PG FN LRFGLASLCF PWTPS P S G++ E+ERQGLW+AGAELG+WMFLGF+LQA+GLQ TSASRSGFLLYLNVKLVPLFAWLLLGRRP+LDV+ AL+AF GTALLS DGG MPNVGDAWSLAAAAASAMFILRLEGAAKAYSLTRAKELNSATLWVTT LC W G+E ++ +GG GG GGG G+ + L +++W QIV+LGVV SA+CNWIQTLGQREVPAEKAALIYALDPVYGA FAR+LLGESEALG GY GA LVT+AAV A+ + + G G ++ G+E+ K E+ D E+ V Q
Sbjct: 1 MDVAFLTPGWAPSSDSIVSPLPPSSTASPPS----CSLTHRLPRLLR-PGDTARAHRFVTAS---SRTQYHGRSWSSPSILSFSGVSAADCPSRKCGAMKSNLLHRCAVPNQKEGTSSPQEHTRNQLEPVDASSPSSPSSSSPSS----PSF-PSDAFAPSPASLKPERQEWAVPDSPEPPFSVSPSVPTPSRLVNSPSASPPLPTEPAPSFLITPALAYLLLNVVTLLWGSQHAVIKSALASSPDYPGVFNLLRFGLASLCFWPWTPSFLPPSLGTCSENGEEGVDAAEKERQGLWRAGAELGIWMFLGFSLQAVGLQLTSASRSGFLLYLNVKLVPLFAWLLLGRRPSLDVVVFALLAFAGTALLSVDGGRMPNVGDAWSLAAAAASAMFILRLEGAAKAYSLTRAKELNSATLWVTTGLCAVWAGLE--ALMGYGGEGGDGGGLGV-------------VFTDLLRDEWPQIVFLGVVASALCNWIQTLGQREVPAEKAALIYALDPVYGAVFARLLLGESEALGTMGYTGAALVTSAAVLATFYGKRGVEGSAHDESGMNGIELSAKKHEDVEDQKEKGEVPQ 559
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO05G05000.1 ID=NO05G05000.1|Name=NO05G05000.1|organism=Nannochloropsis oceanica|type=mRNA|length=2899bp
AATAGAACGACAATACGTAGCGTCCTGTCTGAAACTCCGGCTTCCTTCTT
TTGTGTCTTCCACGGCCGTGCCCACCACATAACTCCCTGGAAGCTTCCAA
AGCTGCCTGTAGATATGCACCCGACCGCAGCGCCACCGCCACGTGCCCTG
TCACCGTCTACCGTCCCATCTTCCTCAGCATGCCGGGCCAGAACTGGAGG
CATCGCCTCCACTGGTATGGCATTTGCCTTTCCCAATCCGAGTCGGGTGC
CCTTAATCTCTACCAGCTTGAGGTCCTCGTCCCCCTCCTCCGCTGCCTCC
CCGTGCTCCCCACACGACACTACAAGTTTCACTTATCGCCTGCCTGATCT
TGTGCCTCTTGGTGGAGAGGATGCGAGGACATCTCAGCACATCATGGTGC
ATATAAAACCTGGACAGAGCGCCCAGCATCGACGCTTTTCAATGGCACCA
CTGGCGTTTAGCCGAAGTCACAGCAGCAGCAGCGACAGCAGCAGTCCTGC
TCGTGTCAAGCCATTACACTCCGAACCCCAGGATGAAGGCAGTTGTGTGG
GCACCGGCAGTGGCAGCAACAGCAGAGAGGCCTCCAGCACGCTCGTGCCT
GCGTCATCTTCCCCCTCCTCTTTCCCTCCTCCACCATCGTTCTCTCCCTC
CATCTCCTCTGCGGAACGTGGCGCGACCTGTGTGACAGAGACTCTATCCA
CAACCGAGACTGACAACGGAAACCCATCCGCAGCAGACGACGCCGATACG
ACCACCCTCCTCTCCTCCTCCCCATCCTCCTCGCTCCCTTCCTTCACCAT
CACTACCTCCCTGGCCTTCCTCCTCCTCAACATCGTCACCATCCTATGGG
GTAGCCAACACGCCATCATCAAAATCGCTCTTCTCTCGTCCCCCGACTCA
CCAGGAGCCTTCAATTTCCTAAGGTTCGGTCTGGCCTCCCTCTGCTTCCT
CCCTTGGACCCCTTCCCTCTTCCCTTCCTCCTCCCCTGCCTCCCTGTCGG
GAGTCGTGCCAGGCATAGAAGAGGAAGAGAGGCAGGGTCTTTGGAAAGCA
GGTGCCGAGCTGGGGGTGTGGATGTTCTTGGGATTCGCACTGCAGGCGTT
GGGGCTGCAGTGCACAAGCGCATCAAGGAGCGGGTTCTTGCTTTACTTGA
ACGTAAAACTCGTGCCCTTGTTTGCCTGGCTGTTGCTTGGGAGACGGCCG
ACATTGGATGTCTTGGGCTCGGCGCTGGTGGCTTTTGTGGGTACTGCATT
GCTAAGCTTCGACGGGGGATCGATGCCGAATGTAGGAGACGCGTGGTCGC
TCGCGGCGGCGGCGGCTTCGGCGATGTTTATATTGCGGTTGGAGGGGGCG
GCCAAGGCGTATTCGTTGACGAGAGCGAAGGAGTTGAATTCTGCCACACT
GTGGGTGACAACGTTGTTGTGCTTGGGCTGGATGGGGGTCGAGTATGCGT
TTATGTTGCAGCATGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGATG
GAGGGAGGAGGGATGGAGGGAGGAGGGGGCATGCTGGAGTTGGTGCAGGG
GCTATGGAAGGAGGATTGGAAGCAGATCGTGTATTTGGGGGTGGTAACGA
GTGCGGTTTGCAATTGGATTCAAACGCTAGGCCAGCGGGAGGTGCCGGCA
GAGAAGGCAGCGTTGATTTATGCGCTTGACCCAGTGTACGGCGCAGCTTT
TGCGAGAGTGTTGCTGGGAGAGAGCGAGGCCCTGGGCGTGAGGGGTTATA
TAGGGGCAGGGCTTGTAACGGCCGCGGCCGTTTTTGCGTCGCTCTGGGCG
CGGTCAGGGGCTACAGGTGGGGGGAGGGAGCAGCCGGAAGGGGTGGAGAT
GGTGAAGGGCGGCGAGGAGGGGAGAGACGGCGGGGAAAGGGACGCAGTGA
GGCAGTGAGAAGGAGGGAGGGTTGAGAGGAAGGTTTAGGGCACGCACGAC
ATTCTTGCTAACCGTGAGGAAAGTGGATGGAGGGAGGGGCGGGAAAGACG
ATATGGGGAGCCGCGAAGGTGAAAAAGGAGGGCAACAAGAGGGCGTGAAA
TGATCAAATGGAAATGAAAATATCAGGACCAGAAGAAGGGAAAAAAACAA
TTTTGAAGTCGAGTGTAATAGAAAGATGAAGAAGGATGTCACCATGCTCT
TGCAGGGAGACTGGATTTTCTTTTTCGAGCCAGCTGGATCTTTTTCACTC
TCTTTCCCTTGGGATTTGACTACATGCCCACTTAGATTTGACAGGACTGC
CTGTCTACTAAGAGCAGACAGCATGCCTATTTATGTTAGACAGCATGCCT
ATATTTAGATCAGACTACATGCCTACTGTATTAGCCTGCACGCCTACTGA
GATTAGACCGCCTGTCTACCTAGATTAGACCGCCTGTCTACCTAGATTAG
ATTGCATGTCCACCTATCTCTGTACCACTTTATGAAGAGCTTCGGTTAAA
AAACCCTCGTTCATAAAACTGCAAGGGCGGTTGTGCACTGCCTCGTCCTC
CCCCGGCTCCTCCGCCGGTACTCCCTCCACCCCCTGCCCCTGATCCTACT
CCTCCCCCCCTTCCTCGTCTCGACCGCTGCTCCCGGCGTCGAGCTGCCAG
TGCTGTGAGCCTCGCCTTTTCCCCTTCCGTTAACGGCCTGTTATGAACTT
TCTCAAGATCCACGCTTTCTGCACCCATCCACCCCTCGTCCCCTCCCTCC
CCCTCCTCCACCATCGTCTCATACTGCAGCACGCGCTGCTTCAGCCTGTC
ATGCTCTTCCTTCTCGGCATCCCGATGTGTCCGGATGGTGGTAGCCAAGG
AAGTGTAGTCAGGGACCATTAACTCCCTCGCTTCTAAACGGCCTCGGTTT
CCCCTCTTCAACATTCGAAACGTCACCCCTCCTCCCCCTCCTCCCCCCC back to topprotein sequence of NO05G05000.1 >NO05G05000.1-protein ID=NO05G05000.1-protein|Name=NO05G05000.1|organism=Nannochloropsis oceanica|type=polypeptide|length=598bp
MHPTAAPPPRALSPSTVPSSSACRARTGGIASTGMAFAFPNPSRVPLIST
SLRSSSPSSAASPCSPHDTTSFTYRLPDLVPLGGEDARTSQHIMVHIKPG
QSAQHRRFSMAPLAFSRSHSSSSDSSSPARVKPLHSEPQDEGSCVGTGSG
SNSREASSTLVPASSSPSSFPPPPSFSPSISSAERGATCVTETLSTTETD
NGNPSAADDADTTTLLSSSPSSSLPSFTITTSLAFLLLNIVTILWGSQHA
IIKIALLSSPDSPGAFNFLRFGLASLCFLPWTPSLFPSSSPASLSGVVPG
IEEEERQGLWKAGAELGVWMFLGFALQALGLQCTSASRSGFLLYLNVKLV
PLFAWLLLGRRPTLDVLGSALVAFVGTALLSFDGGSMPNVGDAWSLAAAA
ASAMFILRLEGAAKAYSLTRAKELNSATLWVTTLLCLGWMGVEYAFMLQH
GGGGGGGGGGGMEGGGMEGGGGMLELVQGLWKEDWKQIVYLGVVTSAVCN
WIQTLGQREVPAEKAALIYALDPVYGAAFARVLLGESEALGVRGYIGAGL
VTAAAVFASLWARSGATGGGREQPEGVEMVKGGEEGRDGGERDAVRQ* back to topmRNA from alignment at chr5:1304201..1307329- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO05G05000.1 ID=NO05G05000.1|Name=NO05G05000.1|organism=Nannochloropsis oceanica|type=mRNA|length=3129bp|location=Sequence derived from alignment at chr5:1304201..1307329- (Nannochloropsis oceanica)
AATAGAACGACAATACGTAGCGTCCTGTCTGAAACTCCGGCTTCCTTCTT
TTGTGTCTTCCACGGCCGTGCCCACCACATAACTCCCTGGAAGCTTCCAA
AGCTGCCTGTAGATATGCACCCGACCGCAGCGCCACCGCCACGTGCCCTG
TCACCGTCTACCGTCCCATCTTCCTCAGCATGCCGGGCCAGAACTGGAGG
CATCGCCTCCACTGGTATGGCATTTGCCTTTCCCAATCCGAGTCGGGTGC
CCTTAATCTCTACCAGCTTGAGGTCCTCGTCCCCCTCCTCCGCTGCCTCC
CCGTGCTCCCCACACGACACTACAAGTTTCACTTATCGCCTGCCTGATCT
TGTGCCTCTTGGTGGAGAGGATGCGAGGACATCTCAGCACATCATGGTGC
ATATAAAACCTGGACAGAGCGCCCAGCATCGACGCTTTTCAATGGCACCA
CTGGCGTTTAGCCGAAGTCACAGCAGCAGCAGCGACAGCAGCAGGTACCG
ATGTTGGGTCTTTGGGTGGGTGGGATATAGCATAAGCAGGCTGACGAAAA
TCGCTAGATGGATAAGAGTGAGCGATCCATGTCTAACCACTGCCCTTTTT
TGGTGGGATCGGGATTTTGGAGGACAGACGTATGACATGTTGCGTCGGCA
CCCGTGTCTGACCCCCTCAATTGACCTACACTCACACTATCCTCTCTCCC
TCCCCACTCTTACAACTCCGACAGTCCTGCTCGTGTCAAGCCATTACACT
CCGAACCCCAGGATGAAGGCAGTTGTGTGGGCACCGGCAGTGGCAGCAAC
AGCAGAGAGGCCTCCAGCACGCTCGTGCCTGCGTCATCTTCCCCCTCCTC
TTTCCCTCCTCCACCATCGTTCTCTCCCTCCATCTCCTCTGCGGAACGTG
GCGCGACCTGTGTGACAGAGACTCTATCCACAACCGAGACTGACAACGGA
AACCCATCCGCAGCAGACGACGCCGATACGACCACCCTCCTCTCCTCCTC
CCCATCCTCCTCGCTCCCTTCCTTCACCATCACTACCTCCCTGGCCTTCC
TCCTCCTCAACATCGTCACCATCCTATGGGGTAGCCAACACGCCATCATC
AAAATCGCTCTTCTCTCGTCCCCCGACTCACCAGGAGCCTTCAATTTCCT
AAGGTTCGGTCTGGCCTCCCTCTGCTTCCTCCCTTGGACCCCTTCCCTCT
TCCCTTCCTCCTCCCCTGCCTCCCTGTCGGGAGTCGTGCCAGGCATAGAA
GAGGAAGAGAGGCAGGGTCTTTGGAAAGCAGGTGCCGAGCTGGGGGTGTG
GATGTTCTTGGGATTCGCACTGCAGGCGTTGGGGCTGCAGTGCACAAGCG
CATCAAGGAGCGGGTTCTTGCTTTACTTGAACGTAAAACTCGTGCCCTTG
TTTGCCTGGCTGTTGCTTGGGAGACGGCCGACATTGGATGTCTTGGGCTC
GGCGCTGGTGGCTTTTGTGGGTACTGCATTGCTAAGCTTCGACGGGGGAT
CGATGCCGAATGTAGGAGACGCGTGGTCGCTCGCGGCGGCGGCGGCTTCG
GCGATGTTTATATTGCGGTTGGAGGGGGCGGCCAAGGCGTATTCGTTGAC
GAGAGCGAAGGAGTTGAATTCTGCCACACTGTGGGTGACAACGTTGTTGT
GCTTGGGCTGGATGGGGGTCGAGTATGCGTTTATGTTGCAGCATGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGGATGGAGGGAGGAGGGATGGAGGG
AGGAGGGGGCATGCTGGAGTTGGTGCAGGGGCTATGGAAGGAGGATTGGA
AGCAGATCGTGTATTTGGGGGTGGTAACGAGTGCGGTTTGCAATTGGATT
CAAACGCTAGGCCAGCGGGAGGTGCCGGCAGAGAAGGCAGCGTTGATTTA
TGCGCTTGACCCAGTGTACGGCGCAGCTTTTGCGAGAGTGTTGCTGGGAG
AGAGCGAGGCCCTGGGCGTGAGGGGTTATATAGGGGCAGGGCTTGTAACG
GCCGCGGCCGTTTTTGCGTCGCTCTGGGCGCGGTCAGGGGCTACAGGTGG
GGGGAGGGAGCAGCCGGAAGGGGTGGAGATGGTGAAGGGCGGCGAGGAGG
GGAGAGACGGCGGGGAAAGGGACGCAGTGAGGCAGTGAGAAGGAGGGAGG
GTTGAGAGGAAGGTTTAGGGCACGCACGACATTCTTGCTAACCGTGAGGA
AAGTGGATGGAGGGAGGGGCGGGAAAGACGATATGGGGAGCCGCGAAGGT
GAAAAAGGAGGGCAACAAGAGGGCGTGAAATGATCAAATGGAAATGAAAA
TATCAGGACCAGAAGAAGGGAAAAAAACAATTTTGAAGTCGAGTGTAATA
GAAAGATGAAGAAGGATGTCACCATGCTCTTGCAGGGAGACTGGATTTTC
TTTTTCGAGCCAGCTGGATCTTTTTCACTCTCTTTCCCTTGGGATTTGAC
TACATGCCCACTTAGATTTGACAGGACTGCCTGTCTACTAAGAGCAGACA
GCATGCCTATTTATGTTAGACAGCATGCCTATATTTAGATCAGACTACAT
GCCTACTGTATTAGCCTGCACGCCTACTGAGATTAGACCGCCTGTCTACC
TAGATTAGACCGCCTGTCTACCTAGATTAGATTGCATGTCCACCTATCTC
TGTACCACTTTATGAAGAGCTTCGGTTAAAAAACCCTCGTTCATAAAACT
GCAAGGGCGGTTGTGCACTGCCTCGTCCTCCCCCGGCTCCTCCGCCGGTA
CTCCCTCCACCCCCTGCCCCTGATCCTACTCCTCCCCCCCTTCCTCGTCT
CGACCGCTGCTCCCGGCGTCGAGCTGCCAGTGCTGTGAGCCTCGCCTTTT
CCCCTTCCGTTAACGGCCTGTTATGAACTTTCTCAAGATCCACGCTTTCT
GCACCCATCCACCCCTCGTCCCCTCCCTCCCCCTCCTCCACCATCGTCTC
ATACTGCAGCACGCGCTGCTTCAGCCTGTCATGCTCTTCCTTCTCGGCAT
CCCGATGTGTCCGGATGGTGGTAGCCAAGGAAGTGTAGTCAGGGACCATT
AACTCCCTCGCTTCTAAACGGCCTCGGTTTCCCCTCTTCAACATTCGAAA
CGTCACCCCTCCTCCCCCTCCTCCCCCCC back to topCoding sequence (CDS) from alignment at chr5:1304201..1307329- >NO05G05000.1 ID=NO05G05000.1|Name=NO05G05000.1|organism=Nannochloropsis oceanica|type=CDS|length=1794bp|location=Sequence derived from alignment at chr5:1304201..1307329- (Nannochloropsis oceanica)
ATGCACCCGACCGCAGCGCCACCGCCACGTGCCCTGTCACCGTCTACCGT
CCCATCTTCCTCAGCATGCCGGGCCAGAACTGGAGGCATCGCCTCCACTG
GTATGGCATTTGCCTTTCCCAATCCGAGTCGGGTGCCCTTAATCTCTACC
AGCTTGAGGTCCTCGTCCCCCTCCTCCGCTGCCTCCCCGTGCTCCCCACA
CGACACTACAAGTTTCACTTATCGCCTGCCTGATCTTGTGCCTCTTGGTG
GAGAGGATGCGAGGACATCTCAGCACATCATGGTGCATATAAAACCTGGA
CAGAGCGCCCAGCATCGACGCTTTTCAATGGCACCACTGGCGTTTAGCCG
AAGTCACAGCAGCAGCAGCGACAGCAGCAGTCCTGCTCGTGTCAAGCCAT
TACACTCCGAACCCCAGGATGAAGGCAGTTGTGTGGGCACCGGCAGTGGC
AGCAACAGCAGAGAGGCCTCCAGCACGCTCGTGCCTGCGTCATCTTCCCC
CTCCTCTTTCCCTCCTCCACCATCGTTCTCTCCCTCCATCTCCTCTGCGG
AACGTGGCGCGACCTGTGTGACAGAGACTCTATCCACAACCGAGACTGAC
AACGGAAACCCATCCGCAGCAGACGACGCCGATACGACCACCCTCCTCTC
CTCCTCCCCATCCTCCTCGCTCCCTTCCTTCACCATCACTACCTCCCTGG
CCTTCCTCCTCCTCAACATCGTCACCATCCTATGGGGTAGCCAACACGCC
ATCATCAAAATCGCTCTTCTCTCGTCCCCCGACTCACCAGGAGCCTTCAA
TTTCCTAAGGTTCGGTCTGGCCTCCCTCTGCTTCCTCCCTTGGACCCCTT
CCCTCTTCCCTTCCTCCTCCCCTGCCTCCCTGTCGGGAGTCGTGCCAGGC
ATAGAAGAGGAAGAGAGGCAGGGTCTTTGGAAAGCAGGTGCCGAGCTGGG
GGTGTGGATGTTCTTGGGATTCGCACTGCAGGCGTTGGGGCTGCAGTGCA
CAAGCGCATCAAGGAGCGGGTTCTTGCTTTACTTGAACGTAAAACTCGTG
CCCTTGTTTGCCTGGCTGTTGCTTGGGAGACGGCCGACATTGGATGTCTT
GGGCTCGGCGCTGGTGGCTTTTGTGGGTACTGCATTGCTAAGCTTCGACG
GGGGATCGATGCCGAATGTAGGAGACGCGTGGTCGCTCGCGGCGGCGGCG
GCTTCGGCGATGTTTATATTGCGGTTGGAGGGGGCGGCCAAGGCGTATTC
GTTGACGAGAGCGAAGGAGTTGAATTCTGCCACACTGTGGGTGACAACGT
TGTTGTGCTTGGGCTGGATGGGGGTCGAGTATGCGTTTATGTTGCAGCAT
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGATGGAGGGAGGAGGGAT
GGAGGGAGGAGGGGGCATGCTGGAGTTGGTGCAGGGGCTATGGAAGGAGG
ATTGGAAGCAGATCGTGTATTTGGGGGTGGTAACGAGTGCGGTTTGCAAT
TGGATTCAAACGCTAGGCCAGCGGGAGGTGCCGGCAGAGAAGGCAGCGTT
GATTTATGCGCTTGACCCAGTGTACGGCGCAGCTTTTGCGAGAGTGTTGC
TGGGAGAGAGCGAGGCCCTGGGCGTGAGGGGTTATATAGGGGCAGGGCTT
GTAACGGCCGCGGCCGTTTTTGCGTCGCTCTGGGCGCGGTCAGGGGCTAC
AGGTGGGGGGAGGGAGCAGCCGGAAGGGGTGGAGATGGTGAAGGGCGGCG
AGGAGGGGAGAGACGGCGGGGAAAGGGACGCAGTGAGGCAGTGA back to top
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