NO05G04830.1, NO05G04830.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G04830.1
Unique NameNO05G04830.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1201
Alignment locationchr5:1254652..1255852 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1254652..1255852 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G04830.1 vs.
Match: EWM27915.1 (methylglutaconyl- mitochondrial [Nannochloropsis gaditana])

HSP 1 Score: 278.9 bits (712), Expect = 1.600e-71
Identity = 158/243 (65.02%), Postives = 189/243 (77.78%), Query Frame = 0 
Query:   14 QLLPSAFLSPRFRTSSSKSTSSPPPPPQSSPLLITRHTLDGFPAIEHKD-GVIVELALNRPEARNALNKSLVSELHEAIASLGQDSTARVVVIKSTSPTSAFCAGADLKERTSMSVTEVSSFVSSLRALMDGVENLPIPTVAVIEGAAFGGGLELALACDLRVAGPKAQMGLTETSLAIIPGAGGTQRLPRVVGEAKAKELIFRAVRIGAREAWRVGLVNVLMEGDGRGGERRWGGFVGRWHR 256
            Q+ PS   + RF  SS   TS+ P PP   PLLITRH L G    E  + GVIV LALNRPEARNALNK+LV+ L++A++SL QD  ARV+++ S++PT AFCAGADLKER +MS +EVSSFVSSLRALMDGVENLP+P +AV+EG A+GGGLELALACD+RVAGPKA+MGLTETSLAIIPGAGGTQRLPR++G A+AKE++FRA RIG  EA R+GLVN +   +  GG R   G   RW R
Sbjct:    7 QVRPSLLPARRFMCSS---TSAHPQPP---PLLITRHDLGGKLVAESSNTGVIVTLALNRPEARNALNKALVTALNDALSSLAQDQIARVLLLTSSAPTKAFCAGADLKERANMSPSEVSSFVSSLRALMDGVENLPMPALAVLEGGAYGGGLELALACDMRVAGPKAEMGLTETSLAIIPGAGGTQRLPRLIGAARAKEMMFRATRIGTSEAHRLGLVNAVATEEEEGGVR---GLAARWCR 240
The following BLAST results are available for this feature:
BLAST of NO05G04830.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27915.11.600e-7165.02methylglutaconyl- mitochondrial [Nannochloropsis g... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G04830NO05G04830Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G04830.1NO05G04830.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G04830.1.cds1NO05G04830.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G04830.1 ID=NO05G04830.1|Name=NO05G04830.1|organism=Nannochloropsis oceanica|type=mRNA|length=1201bp
ACAGCCTTCTCGAGTCGAGCATGTTCCGCGCCATCACGATCGCCTGTTAT
CCCAGCTCTCAGCTTCTTCCGTCCGCATTCCTGTCTCCTCGCTTTCGCAC
CAGCTCCTCCAAGTCGACCTCCTCCCCCCCTCCTCCTCCTCAATCCTCTC
CCCTCCTTATCACCCGTCACACCCTCGACGGATTCCCTGCCATCGAGCAC
AAGGACGGCGTTATTGTTGAGCTGGCTCTGAACCGGCCCGAGGCTCGGAA
TGCGCTGAACAAGTCGCTGGTCTCGGAGCTTCATGAAGCCATCGCCTCCC
TTGGGCAGGATAGCACTGCTCGTGTTGTCGTCATAAAAAGCACCTCGCCC
ACCTCCGCGTTTTGCGCGGGGGCCGATTTAAAAGAACGGACCAGTATGTC
GGTTACTGAGGTGTCATCATTTGTCTCGAGCTTGCGGGCGTTGATGGATG
GGGTGGAGAATCTACCAATACCGACTGTGGCTGTGATTGAGGGGGCTGCG
TTTGGCGGGGGATTAGAACTGGCCCTGGCGTGCGATTTGCGTGTGGCGGG
ACCAAAGGCACAGATGGGACTGACGGAGACGAGCTTGGCGATCATTCCCG
GAGCGGGGGGGACGCAGAGGCTACCACGGGTGGTAGGGGAGGCGAAGGCC
AAGGAGCTCATATTCAGGGCAGTTAGGATAGGGGCACGAGAGGCATGGAG
GGTAGGGTTAGTAAATGTGCTGATGGAGGGGGACGGAAGGGGGGGGGAGA
GGAGGTGGGGAGGATTTGTAGGGAGATGGCATCGAATGGGCCGGTGGCTG
TGAGGGCGGCTAAGAAGGCAGTTAGGGAGGGAATGCAGGTTGACTTGAGG
ACGGGGTTGGAGCTGGAGAGGGAGTGCTATGCAACGGTGATTCCAACGGA
GGATAGGATAGAGGGATTGAGAGCGTTCAAAGAGAAGAGGAAGCCGGTGT
ATAATGGGAGGTGAAGGAGGGAGTCAGGAAGGGAGGGACTCTCTTTGTGA
GAAGGTGGATGTAAAGACGAGTGGCAACAAGAGATATCGAATGAGTTTAA
TTTATGGGGTATGTGCATGAGGCATCAACACCAACTACAGAAAGGAGAGA
AAAAGAGAAACAGACACACATAGAATTGGAGAGTAGTCAAGTTTGAAACA
CCTTGAGGAACGAACGACTGAAGATGTTCATGCTCATCCCACAGTATCAA
C
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protein sequence of NO05G04830.1

>NO05G04830.1-protein ID=NO05G04830.1-protein|Name=NO05G04830.1|organism=Nannochloropsis oceanica|type=polypeptide|length=261bp
MFRAITIACYPSSQLLPSAFLSPRFRTSSSKSTSSPPPPPQSSPLLITRH
TLDGFPAIEHKDGVIVELALNRPEARNALNKSLVSELHEAIASLGQDSTA
RVVVIKSTSPTSAFCAGADLKERTSMSVTEVSSFVSSLRALMDGVENLPI
PTVAVIEGAAFGGGLELALACDLRVAGPKAQMGLTETSLAIIPGAGGTQR
LPRVVGEAKAKELIFRAVRIGAREAWRVGLVNVLMEGDGRGGERRWGGFV
GRWHRMGRWL*
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mRNA from alignment at chr5:1254652..1255852-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G04830.1 ID=NO05G04830.1|Name=NO05G04830.1|organism=Nannochloropsis oceanica|type=mRNA|length=1201bp|location=Sequence derived from alignment at chr5:1254652..1255852- (Nannochloropsis oceanica)
ACAGCCTTCTCGAGTCGAGCATGTTCCGCGCCATCACGATCGCCTGTTAT
CCCAGCTCTCAGCTTCTTCCGTCCGCATTCCTGTCTCCTCGCTTTCGCAC
CAGCTCCTCCAAGTCGACCTCCTCCCCCCCTCCTCCTCCTCAATCCTCTC
CCCTCCTTATCACCCGTCACACCCTCGACGGATTCCCTGCCATCGAGCAC
AAGGACGGCGTTATTGTTGAGCTGGCTCTGAACCGGCCCGAGGCTCGGAA
TGCGCTGAACAAGTCGCTGGTCTCGGAGCTTCATGAAGCCATCGCCTCCC
TTGGGCAGGATAGCACTGCTCGTGTTGTCGTCATAAAAAGCACCTCGCCC
ACCTCCGCGTTTTGCGCGGGGGCCGATTTAAAAGAACGGACCAGTATGTC
GGTTACTGAGGTGTCATCATTTGTCTCGAGCTTGCGGGCGTTGATGGATG
GGGTGGAGAATCTACCAATACCGACTGTGGCTGTGATTGAGGGGGCTGCG
TTTGGCGGGGGATTAGAACTGGCCCTGGCGTGCGATTTGCGTGTGGCGGG
ACCAAAGGCACAGATGGGACTGACGGAGACGAGCTTGGCGATCATTCCCG
GAGCGGGGGGGACGCAGAGGCTACCACGGGTGGTAGGGGAGGCGAAGGCC
AAGGAGCTCATATTCAGGGCAGTTAGGATAGGGGCACGAGAGGCATGGAG
GGTAGGGTTAGTAAATGTGCTGATGGAGGGGGACGGAAGGGGGGGGGAGA
GGAGGTGGGGAGGATTTGTAGGGAGATGGCATCGAATGGGCCGGTGGCTG
TGAGGGCGGCTAAGAAGGCAGTTAGGGAGGGAATGCAGGTTGACTTGAGG
ACGGGGTTGGAGCTGGAGAGGGAGTGCTATGCAACGGTGATTCCAACGGA
GGATAGGATAGAGGGATTGAGAGCGTTCAAAGAGAAGAGGAAGCCGGTGT
ATAATGGGAGGTGAAGGAGGGAGTCAGGAAGGGAGGGACTCTCTTTGTGA
GAAGGTGGATGTAAAGACGAGTGGCAACAAGAGATATCGAATGAGTTTAA
TTTATGGGGTATGTGCATGAGGCATCAACACCAACTACAGAAAGGAGAGA
AAAAGAGAAACAGACACACATAGAATTGGAGAGTAGTCAAGTTTGAAACA
CCTTGAGGAACGAACGACTGAAGATGTTCATGCTCATCCCACAGTATCAA
C
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Coding sequence (CDS) from alignment at chr5:1254652..1255852-

>NO05G04830.1 ID=NO05G04830.1|Name=NO05G04830.1|organism=Nannochloropsis oceanica|type=CDS|length=783bp|location=Sequence derived from alignment at chr5:1254652..1255852- (Nannochloropsis oceanica)
ATGTTCCGCGCCATCACGATCGCCTGTTATCCCAGCTCTCAGCTTCTTCC
GTCCGCATTCCTGTCTCCTCGCTTTCGCACCAGCTCCTCCAAGTCGACCT
CCTCCCCCCCTCCTCCTCCTCAATCCTCTCCCCTCCTTATCACCCGTCAC
ACCCTCGACGGATTCCCTGCCATCGAGCACAAGGACGGCGTTATTGTTGA
GCTGGCTCTGAACCGGCCCGAGGCTCGGAATGCGCTGAACAAGTCGCTGG
TCTCGGAGCTTCATGAAGCCATCGCCTCCCTTGGGCAGGATAGCACTGCT
CGTGTTGTCGTCATAAAAAGCACCTCGCCCACCTCCGCGTTTTGCGCGGG
GGCCGATTTAAAAGAACGGACCAGTATGTCGGTTACTGAGGTGTCATCAT
TTGTCTCGAGCTTGCGGGCGTTGATGGATGGGGTGGAGAATCTACCAATA
CCGACTGTGGCTGTGATTGAGGGGGCTGCGTTTGGCGGGGGATTAGAACT
GGCCCTGGCGTGCGATTTGCGTGTGGCGGGACCAAAGGCACAGATGGGAC
TGACGGAGACGAGCTTGGCGATCATTCCCGGAGCGGGGGGGACGCAGAGG
CTACCACGGGTGGTAGGGGAGGCGAAGGCCAAGGAGCTCATATTCAGGGC
AGTTAGGATAGGGGCACGAGAGGCATGGAGGGTAGGGTTAGTAAATGTGC
TGATGGAGGGGGACGGAAGGGGGGGGGAGAGGAGGTGGGGAGGATTTGTA
GGGAGATGGCATCGAATGGGCCGGTGGCTGTGA
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Synonyms
Publications