NO05G04800.3, NO05G04800.3 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G04800.3
Unique NameNO05G04800.3
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1251
Alignment locationchr5:1246478..1247913 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1246478..1247913 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G04800.3 vs.
Match: XP_005854934.1 (hypothetical protein NGA_0388400 [Nannochloropsis gaditana CCMP526]; EKU21422.1 hypothetical protein NGA_0388400 [Nannochloropsis gaditana CCMP526]; EWM27921.1 Methyltransferase type 11 [Nannochloropsis gaditana])

HSP 1 Score: 258.1 bits (658), Expect = 2.600e-65
Identity = 128/161 (79.50%), Postives = 142/161 (88.20%), Query Frame = 0 
Query:    1 MRALQRFTQTASCLCVIPASAFVSGFVRPPPRNSCS-MASSASATRRGLTTMNIKPADVLKDPKWPEEAFFRATDFQRQDESTDTSFYSSPRFVTHIDDPAIKALTDYYAVAFPPNAEVLDICSSWISHYPEGAKRKRTVGMGMNEAELAKNKQLDEYVVK 161
            MR+LQ +++ ASC C +P +AF++    P    SCS +ASS S+TRRGLTTMN+K ADVLKDPKWPEE FFR TD+QRQDES+DTSFYSSPRFVTHIDDPAIKALTDYYAV FPPNAEVLDICSSWISHYPEGAKRKRTVGMGMN+AELAKNKQLDEYVVK
Sbjct:    1 MRSLQHWSRAASCFCALPVTAFIA----PTFSQSCSDVASSPSSTRRGLTTMNVKIADVLKDPKWPEEPFFRPTDWQRQDESSDTSFYSSPRFVTHIDDPAIKALTDYYAVTFPPNAEVLDICSSWISHYPEGAKRKRTVGMGMNKAELAKNKQLDEYVVK 157
The following BLAST results are available for this feature:
BLAST of NO05G04800.3 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854934.12.600e-6579.50hypothetical protein NGA_0388400 [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G04800NO05G04800Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G04800.3NO05G04800.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G04800.3.cds1NO05G04800.3.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G04800.3.cds2NO05G04800.3.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G04800.3 ID=NO05G04800.3|Name=NO05G04800.3|organism=Nannochloropsis oceanica|type=mRNA|length=1251bp
AAAAAACAGTCATATGCGTGCCTTGCAACGCTTTACCCAAACGGCGTCGT
GCCTCTGCGTCATTCCCGCCTCTGCTTTTGTCAGCGGCTTCGTCCGACCT
CCCCCTCGCAACAGCTGCAGCATGGCCTCCTCTGCCTCCGCCACGCGCCG
TGGCCTCACCACCATGAATATCAAGCCCGCTGACGTCTTAAAAGACCCCA
AGTGGCCCGAGGAGGCCTTCTTCCGCGCGACTGATTTCCAACGGCAAGAC
GAGTCGACCGACACTTCGTTTTACAGCAGTCCCCGCTTTGTCACGCACAT
CGATGACCCGGCAATCAAGGCTCTGACCGATTACTACGCGGTTGCCTTCC
CTCCCAATGCTGAAGTTCTCGACATCTGTTCGTCGTGGATCTCGCATTAC
CCAGAGGGAGCCAAGCGAAAGCGGACAGTTGGCATGGGAATGAATGAGGC
TGAGCTTGCCAAAAATAAGCAGCTGGATGAGTACGTCGTCAAGGTATGGC
CTCGGATAGGATCGTTTCCTTCATTCCTTCATGTGAGCCCCCGTATTGAT
AAATTGGCGATTGACTTTGCTTCCTTCCCCTGCCTCTCTCCCTCCCTCCC
TCCCTCTACCCCAGGACCTGAACGTGGACCCCACCCTTCCCTTTTGCGAC
GAGAGCTTCGATGTAGTGACCTGTGTAGTTAGTGTGGATTACCTTATTAA
ACCTCTGGAAGTCTTCGCGGAGATCTCGCGTGTGCTGAAACCAGGAGGAT
TATGCATCATGAGCATGAGCAATAGATGTTTCCCGACCAAGGCGATCTCT
ATCTGGTTGGAGACTGGGGATGCGGGTCATGTTTTCATCGTGTGAGTAGG
GGAAGGAGGGCAGGGGGGATGGAGAGTTGAGAAGAGGAGGGGAGGGACAG
GAGTTCATGCCTTCTTTAATAGCCGAGGACCCACAATTATGTATCACTTA
CCTAACGGCCGCTGCTCGTCCATTCGAAATTTGAAGACGTCACACCTCAC
AACCGTTCCTTCCTTCCCTATCCCTCACCCCAACAGCGGCGCGTACTTCC
ATTATGGCAGTAAGGATTTCGAGGCCCCTAAATGTGTTGATATAAGCCCT
AATCCCGGGCGGAGCGATCCCATGTTTATTGTTCAGGCGGCCAAGAAGAT
GGAGAAGGCGGCTGCATAATAGAAGGAGGGATAGAAGGATGGAGGGGAGG
GTGAGGAAAATAAGGCAAGAAAAACAAAGAAAAGGACGAAGTTAAGAAGT
G
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protein sequence of NO05G04800.3

>NO05G04800.3-protein ID=NO05G04800.3-protein|Name=NO05G04800.3|organism=Nannochloropsis oceanica|type=polypeptide|length=223bp
MRALQRFTQTASCLCVIPASAFVSGFVRPPPRNSCSMASSASATRRGLTT
MNIKPADVLKDPKWPEEAFFRATDFQRQDESTDTSFYSSPRFVTHIDDPA
IKALTDYYAVAFPPNAEVLDICSSWISHYPEGAKRKRTVGMGMNEAELAK
NKQLDEYVVKVWPRIGSFPSFLHVSPRIDKLAIDFASFPCLSPSLPPSTP
GPERGPHPSLLRRELRCSDLCS*
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mRNA from alignment at chr5:1246478..1247913+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G04800.3 ID=NO05G04800.3|Name=NO05G04800.3|organism=Nannochloropsis oceanica|type=mRNA|length=1436bp|location=Sequence derived from alignment at chr5:1246478..1247913+ (Nannochloropsis oceanica)
AAAAAACAGTCATATGCGTGCCTTGCAACGCTTTACCCAAACGGCGTCGT
GCCTCTGCGTCATTCCCGCCTCTGCTTTTGTCAGCGGCTTCGTCCGACCT
CCCCCTCGCAACAGCTGCAGCATGGCCTCCTCTGCCTCCGCCACGCGCCG
TGGCCTCACCACCATGAATATCAAGCCCGCTGACGTCTTAAAAGACCCCA
AGTGGCCCGAGGAGGCCTTCTTCCGCGCGACTGATTTCCAACGGCAAGAC
GAGTCGACCGACACTTCGTTTTACAGCAGTCCCCGCTTTGTCACGCACAT
CGATGACCCGGCAATCAAGGCTCTGACCGGTAATGATTTGGCTTGGGCAG
GTTCTTTGCTTTTTCCTTGTGATACCTCTTCTACCTGTTGTACGCTTCAT
TCTGTGATTGTCGTGTTGATCGCCGGGTAGATGGGTTTCGGACTTTGGGC
TCGTCATCCCTTCCTCCATCCATCTCTCATGCCCGTCTGTCGCCCCTCCT
TGCCTCTTCTCTAGATTACTACGCGGTTGCCTTCCCTCCCAATGCTGAAG
TTCTCGACATCTGTTCGTCGTGGATCTCGCATTACCCAGAGGGAGCCAAG
CGAAAGCGGACAGTTGGCATGGGAATGAATGAGGCTGAGCTTGCCAAAAA
TAAGCAGCTGGATGAGTACGTCGTCAAGGTATGGCCTCGGATAGGATCGT
TTCCTTCATTCCTTCATGTGAGCCCCCGTATTGATAAATTGGCGATTGAC
TTTGCTTCCTTCCCCTGCCTCTCTCCCTCCCTCCCTCCCTCTACCCCAGG
ACCTGAACGTGGACCCCACCCTTCCCTTTTGCGACGAGAGCTTCGATGTA
GTGACCTGTGTAGTTAGTGTGGATTACCTTATTAAACCTCTGGAAGTCTT
CGCGGAGATCTCGCGTGTGCTGAAACCAGGAGGATTATGCATCATGAGCA
TGAGCAATAGATGTTTCCCGACCAAGGCGATCTCTATCTGGTTGGAGACT
GGGGATGCGGGTCATGTTTTCATCGTGTGAGTAGGGGAAGGAGGGCAGGG
GGGATGGAGAGTTGAGAAGAGGAGGGGAGGGACAGGAGTTCATGCCTTCT
TTAATAGCCGAGGACCCACAATTATGTATCACTTACCTAACGGCCGCTGC
TCGTCCATTCGAAATTTGAAGACGTCACACCTCACAACCGTTCCTTCCTT
CCCTATCCCTCACCCCAACAGCGGCGCGTACTTCCATTATGGCAGTAAGG
ATTTCGAGGCCCCTAAATGTGTTGATATAAGCCCTAATCCCGGGCGGAGC
GATCCCATGTTTATTGTTCAGGCGGCCAAGAAGATGGAGAAGGCGGCTGC
ATAATAGAAGGAGGGATAGAAGGATGGAGGGGAGGGTGAGGAAAATAAGG
CAAGAAAAACAAAGAAAAGGACGAAGTTAAGAAGTG
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Coding sequence (CDS) from alignment at chr5:1246478..1247913+

>NO05G04800.3 ID=NO05G04800.3|Name=NO05G04800.3|organism=Nannochloropsis oceanica|type=CDS|length=669bp|location=Sequence derived from alignment at chr5:1246478..1247913+ (Nannochloropsis oceanica)
ATGCGTGCCTTGCAACGCTTTACCCAAACGGCGTCGTGCCTCTGCGTCAT
TCCCGCCTCTGCTTTTGTCAGCGGCTTCGTCCGACCTCCCCCTCGCAACA
GCTGCAGCATGGCCTCCTCTGCCTCCGCCACGCGCCGTGGCCTCACCACC
ATGAATATCAAGCCCGCTGACGTCTTAAAAGACCCCAAGTGGCCCGAGGA
GGCCTTCTTCCGCGCGACTGATTTCCAACGGCAAGACGAGTCGACCGACA
CTTCGTTTTACAGCAGTCCCCGCTTTGTCACGCACATCGATGACCCGGCA
ATCAAGGCTCTGACCGATTACTACGCGGTTGCCTTCCCTCCCAATGCTGA
AGTTCTCGACATCTGTTCGTCGTGGATCTCGCATTACCCAGAGGGAGCCA
AGCGAAAGCGGACAGTTGGCATGGGAATGAATGAGGCTGAGCTTGCCAAA
AATAAGCAGCTGGATGAGTACGTCGTCAAGGTATGGCCTCGGATAGGATC
GTTTCCTTCATTCCTTCATGTGAGCCCCCGTATTGATAAATTGGCGATTG
ACTTTGCTTCCTTCCCCTGCCTCTCTCCCTCCCTCCCTCCCTCTACCCCA
GGACCTGAACGTGGACCCCACCCTTCCCTTTTGCGACGAGAGCTTCGATG
TAGTGACCTGTGTAGTTAG
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Synonyms
Publications