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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr5 | genome | chr5:1236992..1239669 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO05G04760.2 vs.
Match: XP_005854935.1 (atp-binding cassette [Nannochloropsis gaditana CCMP526]; EKU21423.1 atp-binding cassette [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 811.6 bits (2095), Expect = 1.500e-231 Identity = 407/553 (73.60%), Postives = 459/553 (83.00%), Query Frame = 0
Query: 1 MTTRPTVVDEAASLSRPLSSSAAPIKHSLEWHVKSFRVRPRRTRRSSSSSDKATAAPTTKTILRDVAGRTVSGELTAILGPSGAGKTTLLECISLRNRNFDGCVQYDRQAPQGRFFTLSAFVHQEEMLYGFLTPREHLTFHAVARMSGGGGGWCIGGGPNHDGKVDGKVDGNGSHLRQTSRKVMGQRVEQVIKEVKLEKCADTLIGGSDPVFAAKGISGGERKRLTIATELLLTPEAIFLDEPNTGLDSVMSESIFQTLKDLTNEARIVVATVHCPSSKTFHLFSNLILLTCDGRLAYSGPAAEALAYFQATLAMECRQHYNPADFVLELVSPEPGVPLEEEIRRMDVLSHAYAHSGMHVTNPLAPDDKHKSLHDVRGQGASNWTLFKLNVWRGMLEFKRDRVTLILWAAVSVLLGSLFGILYWQLAASNWRNLMGLIFSAVVGNVFTGCLGVVMRFPLEWTLVCREYYSGANAMGPYIVARFLTTLPLSYGPFLMASIIYWATGMDPDAGKYVVFVLIFVTYNWTCFSLGQWVSSFSANPLVAMSIMPAFTT 554
MTT +D + P ++ A I+H LEWHV+SF+V+ RR+ R+ +T TTKTIL+ VAG VSGELTAILGPSGAGKTTLLECISLRNRNFDGCVQYD QAP+GRFFTLSAFVHQ +MLYGFLTPREHLTFHA+ARMS GG G P + G + S + M +RVE+VI VKLEKCADTLIGGSDPVF KGISGGERKRLTIATELL T E IFLDEP++GLDSVMSESIFQTLKDLT + RIV+ATVHCPSSKT+HLFSNLILLTCDGRLAYSGPAA+AL+YFQA L +EC QHYNPADFVLELVS EPGVPL+EE+RRMD LS AYA S M + NPL DDKHK+LHDVRGQGAS+W FKLN+WRG L+ RDR+TLILWAAVS L+G+LFG+LYWQLAASNWRNLMGLIFSAVVGNVFTGCLGVVMRFP+EWTLV RE+ SGANA+GPY++ARF TTLPLSYGP LM+SIIYW TGMDPDAG Y++FVLIFV++NW+CFSLGQW+SSFSANPLVAM+IMP F T
Sbjct: 1 MTTHEDYMDASVVDQTPTNNFAVKIQHKLEWHVESFKVQIRRS-RAPGKGTASTTTQTTKTILQKVAGCAVSGELTAILGPSGAGKTTLLECISLRNRNFDGCVQYDGQAPEGRFFTLSAFVHQADMLYGFLTPREHLTFHAIARMS-GGSRTAARGLPEPGASQTSR--GQSWQAEKMSSESMARRVEEVIATVKLEKCADTLIGGSDPVFNVKGISGGERKRLTIATELLQTNEIIFLDEPSSGLDSVMSESIFQTLKDLTTQGRIVIATVHCPSSKTYHLFSNLILLTCDGRLAYSGPAAQALSYFQAALGIECPQHYNPADFVLELVSAEPGVPLQEELRRMDALSLAYAQSFMKIQNPLPADDKHKALHDVRGQGASDWVFFKLNLWRGGLQLARDRITLILWAAVSALIGALFGVLYWQLAASNWRNLMGLIFSAVVGNVFTGCLGVVMRFPMEWTLVVREFSSGANAVGPYMIARFFTTLPLSYGPVLMSSIIYWCTGMDPDAGTYLIFVLIFVSFNWSCFSLGQWISSFSANPLVAMTIMPGFVT 549
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO05G04760.2 ID=NO05G04760.2|Name=NO05G04760.2|organism=Nannochloropsis oceanica|type=mRNA|length=2496bp
AACAGGGCACCATGACCACGCGGCCCACGGTCGTCGACGAGGCCGCCTCT
CTGTCCCGCCCTTTGAGCTCCAGTGCTGCCCCAATTAAACACAGTCTAGA
GTGGCATGTGAAGTCCTTTCGTGTGCGGCCAAGACGCACACGCAGAAGCA
GCAGCAGCAGTGATAAGGCCACCGCTGCACCCACAACCAAGACTATCCTG
CGAGATGTGGCGGGGCGGACGGTCAGTGGGGAGCTTACCGCCATTCTCGG
ACCTAGTGGCGCGGGCAAGACGACGCTACTGGAGTGCATTTCGCTTCGCA
ACAGGAATTTTGATGGGTGCGTGCAGTATGACAGACAGGCACCGCAAGGA
CGATTCTTCACGCTCTCCGCCTTTGTCCATCAGGAGGAGATGTTGTACGG
CTTTTTGACCCCCCGTGAACATCTAACTTTCCACGCCGTTGCCCGCATGA
GCGGTGGCGGAGGTGGTTGGTGTATTGGTGGTGGGCCAAACCACGACGGC
AAAGTCGACGGCAAAGTCGACGGCAACGGCAGCCATCTCCGCCAAACGTC
GCGAAAAGTGATGGGCCAGCGGGTGGAACAGGTCATCAAGGAGGTCAAGC
TTGAGAAATGTGCAGATACATTGATTGGTGGAAGTGACCCCGTCTTTGCT
GCCAAGGGCATCTCTGGGGGGGAACGGAAGCGTCTGACCATTGCCACGGA
GCTGCTACTCACCCCTGAGGCGATTTTTCTGGACGAACCAAATACTGGCC
TTGACAGTGTGATGTCCGAATCGATATTTCAAACGCTGAAGGACCTCACA
AATGAAGCACGGATCGTTGTCGCGACAGTTCACTGCCCTTCCTCCAAGAC
GTTCCACCTCTTCAGCAACCTCATCCTCCTGACCTGCGATGGCCGCCTTG
CCTACTCCGGCCCTGCCGCCGAAGCTCTCGCCTATTTCCAAGCCACGTTG
GCCATGGAGTGCCGGCAACATTACAACCCGGCCGATTTCGTCCTCGAGCT
CGTTTCCCCCGAGCCGGGTGTGCCACTGGAGGAGGAAATCCGTCGGATGG
ATGTCTTATCCCACGCTTACGCGCATTCCGGTATGCATGTCACCAATCCC
TTGGCCCCCGACGATAAACACAAGTCCTTGCACGATGTTCGGGGGCAAGG
GGCGAGTAATTGGACTTTGTTCAAGCTCAATGTGTGGAGGGGTATGTTGG
AGTTCAAAAGAGATAGGGTCACCCTCATCTTGTGGGCAGCGGTGAGCGTG
TTGCTTGGCTCCCTGTTCGGTATCCTCTACTGGCAGCTTGCTGCGAGCAA
CTGGCGGAATCTGATGGGCTTGATTTTCTCGGCAGTCGTCGGAAACGTGT
TTACCGGGTGCTTGGGGGTGGTGATGCGTTTCCCTCTTGAGTGGACCCTG
GTGTGCAGGGAGTACTACAGCGGAGCAAATGCCATGGGTCCCTACATCGT
CGCGCGCTTTTTGACAACCTTGCCTTTGTCCTACGGGCCCTTTCTGATGG
CATCGATCATCTACTGGGCTACGGGCATGGACCCGGATGCTGGGAAATAT
GTGGTGTTTGTCTTGATTTTCGTGACGTACAATTGGACGTGTTTTTCCTT
GGGGCAGTGGGTGAGCTCCTTCAGCGCGAACCCTTTGGTGGCGATGTCGA
TCATGCCGGCATTCACAACGTAAGTACATTGATTTGAGAGGGGGGCACTC
GATGGGTAGGTCTGAGAGTGGCTTAGGTGGATGGGGTAAGCCGTGCATGC
CGCTCCTAGCGCCCTTCTTCATACTCAAGTATACATATCTTCCTTCCCCT
CCCTCGTTCCGTCCTTCCGCAGACCTATGATCATGTTCTCTGGCCTGCTT
ATTGAGCGCAGCAGCGTGCCGGTCTGGCTGGCGTGGATCGAAAAAATCTC
CATCGTGAACTACGCCTTTGACACCTTGATGAGCCAGCAGATGCATATTC
TTCCCCCGGGCCAGCCGGAACAGGTCCAAGCATTTATTCAATTCGATCCG
AACCGGATGGGGATGAATGTCGTGTTGTTGTGGGTGTTGACGGTGGTATT
TCAGATTTTCACCTATGCGAACTTGGTCGTGCGTTTGCGAGTGTCCCGGG
CAGTGTCGTAAAGGGGGGCAGGGGTGGTTGAAAGGGAGAAAGCGAGCAGG
AGCAAGAAAAGAAAGGTGGCTTGAGGGAGACAGGAAGAAGCTGTACGAGT
TTGAAAGTACGACGGTAGATATGACCTCTCTAACGGTTGTGTGGCATGAT
GCAGAAGATATCCCAAATGCCTCACTCCCACAAAGTACTACTCAAAAAAG
AGGAAATTGCAAACATTCTCATGAAATGTTGTAGTAAAAAAAAATAGAAG
GGGGGAGGAGGCGGATTTACGAACATTACATGCACGCGTACAAGTGGCAG
TGGAACGATTCAAAGGAGGGATTGGGGAAAATAAACACAAGTAGGGGGGA
AAATTTTTGCAGTAAAAAATAAGATCCCAAAATTATATGATAGGAC back to topprotein sequence of NO05G04760.2 >NO05G04760.2-protein ID=NO05G04760.2-protein|Name=NO05G04760.2|organism=Nannochloropsis oceanica|type=polypeptide|length=554bp
MTTRPTVVDEAASLSRPLSSSAAPIKHSLEWHVKSFRVRPRRTRRSSSSS
DKATAAPTTKTILRDVAGRTVSGELTAILGPSGAGKTTLLECISLRNRNF
DGCVQYDRQAPQGRFFTLSAFVHQEEMLYGFLTPREHLTFHAVARMSGGG
GGWCIGGGPNHDGKVDGKVDGNGSHLRQTSRKVMGQRVEQVIKEVKLEKC
ADTLIGGSDPVFAAKGISGGERKRLTIATELLLTPEAIFLDEPNTGLDSV
MSESIFQTLKDLTNEARIVVATVHCPSSKTFHLFSNLILLTCDGRLAYSG
PAAEALAYFQATLAMECRQHYNPADFVLELVSPEPGVPLEEEIRRMDVLS
HAYAHSGMHVTNPLAPDDKHKSLHDVRGQGASNWTLFKLNVWRGMLEFKR
DRVTLILWAAVSVLLGSLFGILYWQLAASNWRNLMGLIFSAVVGNVFTGC
LGVVMRFPLEWTLVCREYYSGANAMGPYIVARFLTTLPLSYGPFLMASII
YWATGMDPDAGKYVVFVLIFVTYNWTCFSLGQWVSSFSANPLVAMSIMPA
FTT* back to topmRNA from alignment at chr5:1236992..1239669+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO05G04760.2 ID=NO05G04760.2|Name=NO05G04760.2|organism=Nannochloropsis oceanica|type=mRNA|length=2678bp|location=Sequence derived from alignment at chr5:1236992..1239669+ (Nannochloropsis oceanica)
AACAGGGCACCATGACCACGCGGCCCACGGTCGTCGACGAGGCCGCCTCT
CTGTCCCGCCCTTTGAGCTCCAGTGCTGCCCCAATTAAACACAGTCTAGA
GTGGCATGTGAAGTCCTTTCGTGTGCGGCCAAGACGCACACGCAGAAGCA
GCAGCAGCAGTGATAAGGCCACCGCTGCACCCACAACCAAGACTATCCTG
CGAGATGTGGCGGGGCGGACGGTCAGTGGGGAGCTTACCGCCATTCTCGG
ACCTAGTGGCGCGGGCAAGACGACGCTACTGGAGTGCATTTCGCTTCGCA
ACAGGAATTTTGATGGGTGCGTGCAGTATGACAGACAGGCACCGCAAGGA
CGATTCTTCACGCTCTCCGCCTTTGTCCATCAGGAGGAGATGTTGTACGG
CTTTTTGACCCCCCGTGAACATCTAACTTTCCACGCCGTTGCCCGCATGA
GCGGTGGCGGAGGTGGTTGGTGTATTGGTGGTGGGCCAAACCACGACGGC
AAAGTCGACGGCAAAGTCGACGGCAACGGCAGCCATCTCCGCCAAACGTC
GCGAAAAGTGATGGGCCAGCGGGTGGAACAGGTCATCAAGGAGGTCAAGC
TTGAGAAATGTGCAGATACATTGATTGGTGGAAGTGACCCCGTCTTTGCT
GCCAAGGGCATCTCTGGGGGGGAACGGAAGCGTCTGACCATTGCCACGGA
GCTGCTACTCACCCCTGAGGCGATTTTTCTGGACGAACCAAATACTGGCC
TTGACAGTGTGATGTCCGAATCGGTGAGTGTTTTAAAATGGAATGGGTGG
GTGGGAAGGACAAAAAGGGAAGTGAAAATGAGTGCTTGTTGGAGAAGGTT
TGGAGGGAAGGGGGGATAATGAAAATGGAATGCTTTGCGGGCAAATCGAT
TCTTCAATTATTCACATCCCCGTATACTTTTGATCCTTCATGTCATTTCC
ATTAGATATTTCAAACGCTGAAGGACCTCACAAATGAAGCACGGATCGTT
GTCGCGACAGTTCACTGCCCTTCCTCCAAGACGTTCCACCTCTTCAGCAA
CCTCATCCTCCTGACCTGCGATGGCCGCCTTGCCTACTCCGGCCCTGCCG
CCGAAGCTCTCGCCTATTTCCAAGCCACGTTGGCCATGGAGTGCCGGCAA
CATTACAACCCGGCCGATTTCGTCCTCGAGCTCGTTTCCCCCGAGCCGGG
TGTGCCACTGGAGGAGGAAATCCGTCGGATGGATGTCTTATCCCACGCTT
ACGCGCATTCCGGTATGCATGTCACCAATCCCTTGGCCCCCGACGATAAA
CACAAGTCCTTGCACGATGTTCGGGGGCAAGGGGCGAGTAATTGGACTTT
GTTCAAGCTCAATGTGTGGAGGGGTATGTTGGAGTTCAAAAGAGATAGGG
TCACCCTCATCTTGTGGGCAGCGGTGAGCGTGTTGCTTGGCTCCCTGTTC
GGTATCCTCTACTGGCAGCTTGCTGCGAGCAACTGGCGGAATCTGATGGG
CTTGATTTTCTCGGCAGTCGTCGGAAACGTGTTTACCGGGTGCTTGGGGG
TGGTGATGCGTTTCCCTCTTGAGTGGACCCTGGTGTGCAGGGAGTACTAC
AGCGGAGCAAATGCCATGGGTCCCTACATCGTCGCGCGCTTTTTGACAAC
CTTGCCTTTGTCCTACGGGCCCTTTCTGATGGCATCGATCATCTACTGGG
CTACGGGCATGGACCCGGATGCTGGGAAATATGTGGTGTTTGTCTTGATT
TTCGTGACGTACAATTGGACGTGTTTTTCCTTGGGGCAGTGGGTGAGCTC
CTTCAGCGCGAACCCTTTGGTGGCGATGTCGATCATGCCGGCATTCACAA
CGTAAGTACATTGATTTGAGAGGGGGGCACTCGATGGGTAGGTCTGAGAG
TGGCTTAGGTGGATGGGGTAAGCCGTGCATGCCGCTCCTAGCGCCCTTCT
TCATACTCAAGTATACATATCTTCCTTCCCCTCCCTCGTTCCGTCCTTCC
GCAGACCTATGATCATGTTCTCTGGCCTGCTTATTGAGCGCAGCAGCGTG
CCGGTCTGGCTGGCGTGGATCGAAAAAATCTCCATCGTGAACTACGCCTT
TGACACCTTGATGAGCCAGCAGATGCATATTCTTCCCCCGGGCCAGCCGG
AACAGGTCCAAGCATTTATTCAATTCGATCCGAACCGGATGGGGATGAAT
GTCGTGTTGTTGTGGGTGTTGACGGTGGTATTTCAGATTTTCACCTATGC
GAACTTGGTCGTGCGTTTGCGAGTGTCCCGGGCAGTGTCGTAAAGGGGGG
CAGGGGTGGTTGAAAGGGAGAAAGCGAGCAGGAGCAAGAAAAGAAAGGTG
GCTTGAGGGAGACAGGAAGAAGCTGTACGAGTTTGAAAGTACGACGGTAG
ATATGACCTCTCTAACGGTTGTGTGGCATGATGCAGAAGATATCCCAAAT
GCCTCACTCCCACAAAGTACTACTCAAAAAAGAGGAAATTGCAAACATTC
TCATGAAATGTTGTAGTAAAAAAAAATAGAAGGGGGGAGGAGGCGGATTT
ACGAACATTACATGCACGCGTACAAGTGGCAGTGGAACGATTCAAAGGAG
GGATTGGGGAAAATAAACACAAGTAGGGGGGAAAATTTTTGCAGTAAAAA
ATAAGATCCCAAAATTATATGATAGGAC back to topCoding sequence (CDS) from alignment at chr5:1236992..1239669+ >NO05G04760.2 ID=NO05G04760.2|Name=NO05G04760.2|organism=Nannochloropsis oceanica|type=CDS|length=1662bp|location=Sequence derived from alignment at chr5:1236992..1239669+ (Nannochloropsis oceanica)
ATGACCACGCGGCCCACGGTCGTCGACGAGGCCGCCTCTCTGTCCCGCCC
TTTGAGCTCCAGTGCTGCCCCAATTAAACACAGTCTAGAGTGGCATGTGA
AGTCCTTTCGTGTGCGGCCAAGACGCACACGCAGAAGCAGCAGCAGCAGT
GATAAGGCCACCGCTGCACCCACAACCAAGACTATCCTGCGAGATGTGGC
GGGGCGGACGGTCAGTGGGGAGCTTACCGCCATTCTCGGACCTAGTGGCG
CGGGCAAGACGACGCTACTGGAGTGCATTTCGCTTCGCAACAGGAATTTT
GATGGGTGCGTGCAGTATGACAGACAGGCACCGCAAGGACGATTCTTCAC
GCTCTCCGCCTTTGTCCATCAGGAGGAGATGTTGTACGGCTTTTTGACCC
CCCGTGAACATCTAACTTTCCACGCCGTTGCCCGCATGAGCGGTGGCGGA
GGTGGTTGGTGTATTGGTGGTGGGCCAAACCACGACGGCAAAGTCGACGG
CAAAGTCGACGGCAACGGCAGCCATCTCCGCCAAACGTCGCGAAAAGTGA
TGGGCCAGCGGGTGGAACAGGTCATCAAGGAGGTCAAGCTTGAGAAATGT
GCAGATACATTGATTGGTGGAAGTGACCCCGTCTTTGCTGCCAAGGGCAT
CTCTGGGGGGGAACGGAAGCGTCTGACCATTGCCACGGAGCTGCTACTCA
CCCCTGAGGCGATTTTTCTGGACGAACCAAATACTGGCCTTGACAGTGTG
ATGTCCGAATCGATATTTCAAACGCTGAAGGACCTCACAAATGAAGCACG
GATCGTTGTCGCGACAGTTCACTGCCCTTCCTCCAAGACGTTCCACCTCT
TCAGCAACCTCATCCTCCTGACCTGCGATGGCCGCCTTGCCTACTCCGGC
CCTGCCGCCGAAGCTCTCGCCTATTTCCAAGCCACGTTGGCCATGGAGTG
CCGGCAACATTACAACCCGGCCGATTTCGTCCTCGAGCTCGTTTCCCCCG
AGCCGGGTGTGCCACTGGAGGAGGAAATCCGTCGGATGGATGTCTTATCC
CACGCTTACGCGCATTCCGGTATGCATGTCACCAATCCCTTGGCCCCCGA
CGATAAACACAAGTCCTTGCACGATGTTCGGGGGCAAGGGGCGAGTAATT
GGACTTTGTTCAAGCTCAATGTGTGGAGGGGTATGTTGGAGTTCAAAAGA
GATAGGGTCACCCTCATCTTGTGGGCAGCGGTGAGCGTGTTGCTTGGCTC
CCTGTTCGGTATCCTCTACTGGCAGCTTGCTGCGAGCAACTGGCGGAATC
TGATGGGCTTGATTTTCTCGGCAGTCGTCGGAAACGTGTTTACCGGGTGC
TTGGGGGTGGTGATGCGTTTCCCTCTTGAGTGGACCCTGGTGTGCAGGGA
GTACTACAGCGGAGCAAATGCCATGGGTCCCTACATCGTCGCGCGCTTTT
TGACAACCTTGCCTTTGTCCTACGGGCCCTTTCTGATGGCATCGATCATC
TACTGGGCTACGGGCATGGACCCGGATGCTGGGAAATATGTGGTGTTTGT
CTTGATTTTCGTGACGTACAATTGGACGTGTTTTTCCTTGGGGCAGTGGG
TGAGCTCCTTCAGCGCGAACCCTTTGGTGGCGATGTCGATCATGCCGGCA
TTCACAACGTAA back to top
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