NO05G04700.1, NO05G04700.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G04700.1
Unique NameNO05G04700.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2251
Alignment locationchr5:1222706..1224956 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1222706..1224956 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G04700.1 vs.
Match: XP_005855715.1 (preprotein translocase subunit YidC [Nannochloropsis gaditana CCMP526]; EKU20637.1 preprotein translocase subunit YidC [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 765.8 bits (1976), Expect = 9.100e-218
Identity = 416/517 (80.46%), Postives = 437/517 (84.53%), Query Frame = 0 
Query:   20 MKLLLSLLLLGAIPAQGFLLPTPLHSTPAHAQSSHRRQKAGALKAVVDPNEVAGFVQTHLPSSSQWLLQTLQGVADAAVATAPDAAAAVENGKELTGAAAAAAANNGGWLAAPIGAIEKAITFMHEGLQGAGLTNTYGLSIIAFTVLVKLVTLPLNYKQIESTTKMQAIQPKMKEIQAKYKSDPTVQQQKMAQLYSDNNVNPLAGCLPALVQIPIFISLYRALTNLAAQNELNEPFLWLPNLEGPTYGAGPADGMNWLKQWEGFTPSLGWHDTIAFLTIPLILIVSQSISQQILQPTQNKDDPSAAQSQAILKFLPFMVGYFSLNVPSGLGVYWIANNLITTLTTVAVRAVIQGKEDAAASLVRGGESAPAEPAQEQSGGRVKKTGFGKAPPPPPAAKKGEVEDVDDELSSAAGGKERKFGGLPAVGISNDERMGRTEKGSTVEVLKQEGGLTVLREVKDGSVVSTTVRLTPEEMKRRREALERGEDPAAVGPP-SPTLPEPSNDPRQNKRSKRQKK 536
            MKLLL + ++GA   QGFL PTP+H      ++ HRR  +  LKAVVDP  VA  V THLPSSS WLLQTLQGVADAA ATA D A AVE  KE+TGAAAAAAANNGGWLAAPIGAIEKAITFMHE L+GAGL NTYGLSIIAFTVLVKLVTLPLNYKQIESTTKMQAIQPKMKEIQAKYKSDPT+QQQKMAQLYSDNNVNPLAGCLPALVQIPIFISLYRALTNLAA NELNEPFLWLPNLEGPTYGAGPADGMNWLKQWEGFTPSLGWHDTIAFLT+PLILIVSQSISQQILQP  NKDDP+A QSQAILKFLPFMVGYFSLNVPSGLGVYWIANNLITTLTTVAVRAVIQGKE+ A   V GG            GG                    EVEDVDDE SS+AG ++RKFGGLPAVG+S DER+GRTEKGSTVEVLK+EGGLTVLREVKDG VVSTTVRLTPEEMKRRREAL RGEDPAAVGPP +P  PEPSNDPRQNKRSKR+KK
Sbjct:    1 MKLLLGICVIGAALTQGFLTPTPMHQAFQDTRTQHRRFASRTLKAVVDPGHVAEVVHTHLPSSSVWLLQTLQGVADAAAATAADTAGAVEGSKEMTGAAAAAAANNGGWLAAPIGAIEKAITFMHETLEGAGLQNTYGLSIIAFTVLVKLVTLPLNYKQIESTTKMQAIQPKMKEIQAKYKSDPTLQQQKMAQLYSDNNVNPLAGCLPALVQIPIFISLYRALTNLAAANELNEPFLWLPNLEGPTYGAGPADGMNWLKQWEGFTPSLGWHDTIAFLTVPLILIVSQSISQQILQPAANKDDPNAQQSQAILKFLPFMVGYFSLNVPSGLGVYWIANNLITTLTTVAVRAVIQGKEEEA---VAGG-----------GGGGT------------------EVEDVDDESSSSAGVEKRKFGGLPAVGVSQDERLGRTEKGSTVEVLKEEGGLTVLREVKDGEVVSTTVRLTPEEMKRRREALARGEDPAAVGPPTTPKTPEPSNDPRQNKRSKRRKK 485
The following BLAST results are available for this feature:
BLAST of NO05G04700.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855715.19.100e-21880.46preprotein translocase subunit YidC [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G04700NO05G04700Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G04700.1NO05G04700.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G04700.1.cds1NO05G04700.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G04700.1 ID=NO05G04700.1|Name=NO05G04700.1|organism=Nannochloropsis oceanica|type=mRNA|length=2251bp
TGATAGGCCCTTTTTGGCCACCACACGTGGGACCGTGATCATCAACCCTT
GCCACGTTACAAATGTTGTCGATCATGGCAAGATAAATCATATCGCATAC
ATGTGTCCTTATTTTAAGCCTTATGTTGAATAAATCTCCCGGGACTGTGG
GTCTGGGCACGAAAACTGTGGCCTGTGGTCGTGGCGCGAGTCATTCATTA
TTGAAGGGAAGCACTGCCCGTGACTTGTGCCCGTCCATTTCTGACAACGC
ACCTCACCAAACACCCCGATAGGCTTTGCACCACTACGCTCCATGGAGCG
CATCGAAATCTGATGCGCCGGGGCATATCTGTGTACTTTATCTTTCGTGA
AGACGCGTCATGGAAGCTAGAATCATGACTCCCATTTTGCTGATTCACGC
ACGCACCTCGACCACTTGCCCCTTTGTGCCCACAGCACCCGCAACAAGGA
CTCTACGAGACGCGTCACGCCCATCATCTGCGCGTCAATAATATGCTCTC
TGATCCACCTTCTTCCTTCTTTTTTCCGGACCACTACCAAAACACAGTCA
TGAAGCTGTTGCTGTCGCTCTTACTTCTAGGGGCCATCCCGGCTCAGGGC
TTCCTGCTGCCCACACCCCTGCACTCCACACCAGCACATGCACAAAGCAG
CCACCGACGACAAAAGGCAGGTGCTTTGAAAGCTGTAGTGGACCCGAACG
AAGTTGCAGGCTTCGTCCAAACCCACTTGCCGTCCTCCTCCCAGTGGCTC
CTGCAAACGCTGCAGGGTGTGGCAGACGCCGCCGTTGCCACTGCCCCGGA
CGCAGCCGCTGCTGTCGAAAATGGGAAGGAATTGACCGGAGCCGCAGCTG
CAGCAGCGGCGAACAATGGAGGATGGCTGGCGGCGCCCATTGGAGCAATT
GAGAAGGCGATCACATTCATGCACGAGGGGTTGCAAGGCGCGGGCCTAAC
CAACACCTACGGCTTATCCATCATCGCATTCACTGTCCTGGTCAAGCTCG
TGACCTTACCGTTGAACTACAAGCAAATTGAGAGTACCACCAAAATGCAA
GCCATCCAACCAAAGATGAAAGAGATCCAGGCCAAGTACAAATCGGACCC
GACGGTCCAACAGCAGAAAATGGCGCAGCTTTACTCGGATAACAACGTGA
ACCCCCTCGCTGGCTGCCTGCCAGCCCTCGTCCAAATCCCCATCTTCATC
TCCCTCTACCGTGCCCTCACCAACCTTGCCGCGCAAAACGAGCTCAACGA
ACCGTTTCTGTGGCTTCCTAACCTGGAGGGACCCACGTACGGTGCCGGCC
CTGCCGATGGAATGAACTGGCTGAAGCAGTGGGAGGGTTTTACTCCCTCC
CTCGGCTGGCACGACACCATCGCCTTCCTGACCATTCCCCTCATCCTCAT
CGTGTCCCAAAGCATCTCGCAACAAATCCTGCAACCCACGCAAAACAAGG
ATGATCCCTCGGCTGCTCAATCGCAAGCCATTTTGAAGTTCCTCCCCTTC
ATGGTCGGTTATTTTTCCCTGAACGTTCCCTCAGGACTGGGTGTGTACTG
GATCGCCAACAATTTGATCACCACCTTGACAACTGTTGCTGTGCGTGCCG
TTATTCAAGGGAAGGAGGACGCCGCTGCTTCTCTTGTCAGGGGGGGGGAG
TCGGCGCCTGCCGAGCCTGCCCAAGAGCAGAGCGGAGGGCGCGTGAAGAA
GACAGGATTTGGGAAAGCCCCTCCTCCTCCTCCGGCGGCAAAGAAGGGAG
AGGTGGAGGACGTGGACGATGAATTGTCATCAGCGGCTGGAGGGAAGGAG
AGGAAGTTTGGGGGGTTGCCGGCCGTTGGGATCAGTAACGACGAGCGGAT
GGGGAGGACAGAGAAGGGTTCGACCGTTGAGGTCTTGAAGCAGGAGGGGG
GGCTGACGGTATTGAGGGAAGTGAAGGATGGATCTGTGGTGTCCACGACG
GTACGATTGACGCCGGAGGAGATGAAGAGGAGGAGGGAGGCGTTGGAGAG
GGGGGAGGATCCGGCAGCCGTTGGGCCTCCTTCGCCGACGTTACCTGAAC
CGTCCAATGACCCGAGGCAGAATAAACGGTCCAAGCGACAAAAGAAAAAG
TAGAGAAAGGAAACAAGTGGAGTACGTAGTGGGAAGAAAAGAAAGAGAAA
GGGGGGACGGGAGGAGGGCAGGGAGCGAGGGTTTAGATGTTTATTTGAGT
TGTGTGAATTTTGTTTTGATTCGCTGACATGGTTTGTTGGGTGGGTGAGT
G
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protein sequence of NO05G04700.1

>NO05G04700.1-protein ID=NO05G04700.1-protein|Name=NO05G04700.1|organism=Nannochloropsis oceanica|type=polypeptide|length=537bp
MLSDPPSSFFFPDHYQNTVMKLLLSLLLLGAIPAQGFLLPTPLHSTPAHA
QSSHRRQKAGALKAVVDPNEVAGFVQTHLPSSSQWLLQTLQGVADAAVAT
APDAAAAVENGKELTGAAAAAAANNGGWLAAPIGAIEKAITFMHEGLQGA
GLTNTYGLSIIAFTVLVKLVTLPLNYKQIESTTKMQAIQPKMKEIQAKYK
SDPTVQQQKMAQLYSDNNVNPLAGCLPALVQIPIFISLYRALTNLAAQNE
LNEPFLWLPNLEGPTYGAGPADGMNWLKQWEGFTPSLGWHDTIAFLTIPL
ILIVSQSISQQILQPTQNKDDPSAAQSQAILKFLPFMVGYFSLNVPSGLG
VYWIANNLITTLTTVAVRAVIQGKEDAAASLVRGGESAPAEPAQEQSGGR
VKKTGFGKAPPPPPAAKKGEVEDVDDELSSAAGGKERKFGGLPAVGISND
ERMGRTEKGSTVEVLKQEGGLTVLREVKDGSVVSTTVRLTPEEMKRRREA
LERGEDPAAVGPPSPTLPEPSNDPRQNKRSKRQKKK*
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mRNA from alignment at chr5:1222706..1224956+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G04700.1 ID=NO05G04700.1|Name=NO05G04700.1|organism=Nannochloropsis oceanica|type=mRNA|length=2251bp|location=Sequence derived from alignment at chr5:1222706..1224956+ (Nannochloropsis oceanica)
TGATAGGCCCTTTTTGGCCACCACACGTGGGACCGTGATCATCAACCCTT
GCCACGTTACAAATGTTGTCGATCATGGCAAGATAAATCATATCGCATAC
ATGTGTCCTTATTTTAAGCCTTATGTTGAATAAATCTCCCGGGACTGTGG
GTCTGGGCACGAAAACTGTGGCCTGTGGTCGTGGCGCGAGTCATTCATTA
TTGAAGGGAAGCACTGCCCGTGACTTGTGCCCGTCCATTTCTGACAACGC
ACCTCACCAAACACCCCGATAGGCTTTGCACCACTACGCTCCATGGAGCG
CATCGAAATCTGATGCGCCGGGGCATATCTGTGTACTTTATCTTTCGTGA
AGACGCGTCATGGAAGCTAGAATCATGACTCCCATTTTGCTGATTCACGC
ACGCACCTCGACCACTTGCCCCTTTGTGCCCACAGCACCCGCAACAAGGA
CTCTACGAGACGCGTCACGCCCATCATCTGCGCGTCAATAATATGCTCTC
TGATCCACCTTCTTCCTTCTTTTTTCCGGACCACTACCAAAACACAGTCA
TGAAGCTGTTGCTGTCGCTCTTACTTCTAGGGGCCATCCCGGCTCAGGGC
TTCCTGCTGCCCACACCCCTGCACTCCACACCAGCACATGCACAAAGCAG
CCACCGACGACAAAAGGCAGGTGCTTTGAAAGCTGTAGTGGACCCGAACG
AAGTTGCAGGCTTCGTCCAAACCCACTTGCCGTCCTCCTCCCAGTGGCTC
CTGCAAACGCTGCAGGGTGTGGCAGACGCCGCCGTTGCCACTGCCCCGGA
CGCAGCCGCTGCTGTCGAAAATGGGAAGGAATTGACCGGAGCCGCAGCTG
CAGCAGCGGCGAACAATGGAGGATGGCTGGCGGCGCCCATTGGAGCAATT
GAGAAGGCGATCACATTCATGCACGAGGGGTTGCAAGGCGCGGGCCTAAC
CAACACCTACGGCTTATCCATCATCGCATTCACTGTCCTGGTCAAGCTCG
TGACCTTACCGTTGAACTACAAGCAAATTGAGAGTACCACCAAAATGCAA
GCCATCCAACCAAAGATGAAAGAGATCCAGGCCAAGTACAAATCGGACCC
GACGGTCCAACAGCAGAAAATGGCGCAGCTTTACTCGGATAACAACGTGA
ACCCCCTCGCTGGCTGCCTGCCAGCCCTCGTCCAAATCCCCATCTTCATC
TCCCTCTACCGTGCCCTCACCAACCTTGCCGCGCAAAACGAGCTCAACGA
ACCGTTTCTGTGGCTTCCTAACCTGGAGGGACCCACGTACGGTGCCGGCC
CTGCCGATGGAATGAACTGGCTGAAGCAGTGGGAGGGTTTTACTCCCTCC
CTCGGCTGGCACGACACCATCGCCTTCCTGACCATTCCCCTCATCCTCAT
CGTGTCCCAAAGCATCTCGCAACAAATCCTGCAACCCACGCAAAACAAGG
ATGATCCCTCGGCTGCTCAATCGCAAGCCATTTTGAAGTTCCTCCCCTTC
ATGGTCGGTTATTTTTCCCTGAACGTTCCCTCAGGACTGGGTGTGTACTG
GATCGCCAACAATTTGATCACCACCTTGACAACTGTTGCTGTGCGTGCCG
TTATTCAAGGGAAGGAGGACGCCGCTGCTTCTCTTGTCAGGGGGGGGGAG
TCGGCGCCTGCCGAGCCTGCCCAAGAGCAGAGCGGAGGGCGCGTGAAGAA
GACAGGATTTGGGAAAGCCCCTCCTCCTCCTCCGGCGGCAAAGAAGGGAG
AGGTGGAGGACGTGGACGATGAATTGTCATCAGCGGCTGGAGGGAAGGAG
AGGAAGTTTGGGGGGTTGCCGGCCGTTGGGATCAGTAACGACGAGCGGAT
GGGGAGGACAGAGAAGGGTTCGACCGTTGAGGTCTTGAAGCAGGAGGGGG
GGCTGACGGTATTGAGGGAAGTGAAGGATGGATCTGTGGTGTCCACGACG
GTACGATTGACGCCGGAGGAGATGAAGAGGAGGAGGGAGGCGTTGGAGAG
GGGGGAGGATCCGGCAGCCGTTGGGCCTCCTTCGCCGACGTTACCTGAAC
CGTCCAATGACCCGAGGCAGAATAAACGGTCCAAGCGACAAAAGAAAAAG
TAGAGAAAGGAAACAAGTGGAGTACGTAGTGGGAAGAAAAGAAAGAGAAA
GGGGGGACGGGAGGAGGGCAGGGAGCGAGGGTTTAGATGTTTATTTGAGT
TGTGTGAATTTTGTTTTGATTCGCTGACATGGTTTGTTGGGTGGGTGAGT
G
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Coding sequence (CDS) from alignment at chr5:1222706..1224956+

>NO05G04700.1 ID=NO05G04700.1|Name=NO05G04700.1|organism=Nannochloropsis oceanica|type=CDS|length=1611bp|location=Sequence derived from alignment at chr5:1222706..1224956+ (Nannochloropsis oceanica)
ATGCTCTCTGATCCACCTTCTTCCTTCTTTTTTCCGGACCACTACCAAAA
CACAGTCATGAAGCTGTTGCTGTCGCTCTTACTTCTAGGGGCCATCCCGG
CTCAGGGCTTCCTGCTGCCCACACCCCTGCACTCCACACCAGCACATGCA
CAAAGCAGCCACCGACGACAAAAGGCAGGTGCTTTGAAAGCTGTAGTGGA
CCCGAACGAAGTTGCAGGCTTCGTCCAAACCCACTTGCCGTCCTCCTCCC
AGTGGCTCCTGCAAACGCTGCAGGGTGTGGCAGACGCCGCCGTTGCCACT
GCCCCGGACGCAGCCGCTGCTGTCGAAAATGGGAAGGAATTGACCGGAGC
CGCAGCTGCAGCAGCGGCGAACAATGGAGGATGGCTGGCGGCGCCCATTG
GAGCAATTGAGAAGGCGATCACATTCATGCACGAGGGGTTGCAAGGCGCG
GGCCTAACCAACACCTACGGCTTATCCATCATCGCATTCACTGTCCTGGT
CAAGCTCGTGACCTTACCGTTGAACTACAAGCAAATTGAGAGTACCACCA
AAATGCAAGCCATCCAACCAAAGATGAAAGAGATCCAGGCCAAGTACAAA
TCGGACCCGACGGTCCAACAGCAGAAAATGGCGCAGCTTTACTCGGATAA
CAACGTGAACCCCCTCGCTGGCTGCCTGCCAGCCCTCGTCCAAATCCCCA
TCTTCATCTCCCTCTACCGTGCCCTCACCAACCTTGCCGCGCAAAACGAG
CTCAACGAACCGTTTCTGTGGCTTCCTAACCTGGAGGGACCCACGTACGG
TGCCGGCCCTGCCGATGGAATGAACTGGCTGAAGCAGTGGGAGGGTTTTA
CTCCCTCCCTCGGCTGGCACGACACCATCGCCTTCCTGACCATTCCCCTC
ATCCTCATCGTGTCCCAAAGCATCTCGCAACAAATCCTGCAACCCACGCA
AAACAAGGATGATCCCTCGGCTGCTCAATCGCAAGCCATTTTGAAGTTCC
TCCCCTTCATGGTCGGTTATTTTTCCCTGAACGTTCCCTCAGGACTGGGT
GTGTACTGGATCGCCAACAATTTGATCACCACCTTGACAACTGTTGCTGT
GCGTGCCGTTATTCAAGGGAAGGAGGACGCCGCTGCTTCTCTTGTCAGGG
GGGGGGAGTCGGCGCCTGCCGAGCCTGCCCAAGAGCAGAGCGGAGGGCGC
GTGAAGAAGACAGGATTTGGGAAAGCCCCTCCTCCTCCTCCGGCGGCAAA
GAAGGGAGAGGTGGAGGACGTGGACGATGAATTGTCATCAGCGGCTGGAG
GGAAGGAGAGGAAGTTTGGGGGGTTGCCGGCCGTTGGGATCAGTAACGAC
GAGCGGATGGGGAGGACAGAGAAGGGTTCGACCGTTGAGGTCTTGAAGCA
GGAGGGGGGGCTGACGGTATTGAGGGAAGTGAAGGATGGATCTGTGGTGT
CCACGACGGTACGATTGACGCCGGAGGAGATGAAGAGGAGGAGGGAGGCG
TTGGAGAGGGGGGAGGATCCGGCAGCCGTTGGGCCTCCTTCGCCGACGTT
ACCTGAACCGTCCAATGACCCGAGGCAGAATAAACGGTCCAAGCGACAAA
AGAAAAAGTAG
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Synonyms
Publications