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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr5 | genome | chr5:1216720..1221263 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO05G04680.1 ID=NO05G04680.1|Name=NO05G04680.1|organism=Nannochloropsis oceanica|type=mRNA|length=4373bp
AGGCATACCCCGGTGCTTCATCGCCCATCAGTCATTTTCATCATCTTGAC
CTCCTGACTCATATGCTCTTGGGTTTGTTAGTCCGATATATGAGTACTCC
CAGCCAGCACTAACCGCAATAGCGTCCTCTGCATCTACACCCACGAACTT
TCTTAATCCAAACGAGAACATGGTTCTCATTGGCGTGGGCAGTGACAATT
GGGTTCATGCCTCTGCCGGCGCGCCTCCCTCTGCAGCTGCCGCGGTGGGT
GCTGCCGCGGGTGCTCCAGCTGGTGGTGCTGCCGGTGCCGTGCTACCCAT
TCCTGGTGGTGGGACCGTTGATCTGCATATTGTCTGGCCCGACGAGGACG
GCTTCCACGATTGGCTTGAGGAAGGGGAGGGGCAGATGATAGGCGAGGAG
GAGGAGGAGGAGCCGGAGGAGGGGGAGGAGGATATGAGCACGCTTCACGC
CCATCTCCAACATCCTCACCATACCGAGAACAACATGGAGGACGATGACG
AAAACACCTCCCACGAGGAAGAAGATGACCCGCCACCCCTGAGCCTCCCT
ATGTCTTTGTACCCTTCTCCTGCTGCAGCTTCTGTCGTGCTTATTGGCCC
CCTCCCTTCGCCCATGTCTCCACTCTCCTCCTCCTCGCCGCATTACCACG
AGCATTTTTTCCCTTACTATGAGGATGACCAGGAGCAAGAACAGCAGCAG
CAGCAGCAGATGCAGTTACTTAGTTCTCACCGACATCGACCAGAGAGGGG
CGAGGCCGCAGCTGCGGTTGCTGCTGCCCCGGCTGCTGTTGCTGCTGCAG
ATGCCATTGTCAACGACGACTTCACCCTCCCCTCCCCCCTTTTCCCCTCT
TCCGCCCTCTCCCATCACCACCAGAACAATTATGAGGAAGACAGCGGTCG
ACAAGATTTCGCTGCCCTCGCCCTCTCCAGCCCAACTAGCTCCACTGCTA
CCGCTGCTTCTGCTGCTACTACTGCTTTCCTGAGAGAAAGACACGGTTGG
TTCCGACAGCCACCACACCGTGACCTGACACTCATCCCACTCACGCCCGG
GAGCAGAGAGGAAAGGGGAAAGGGGGAGAAAGAGTAGTTTGTGTTAATGG
AGGGGAAAGAAAAGAGGGAGGGGCGATTGGGGGAAGGGGGGGGGGGGACT
TTCTTGACGTGAGGGAGGAAAACGAGGAGGAGGGGCGTGAGTGTAATATC
TGCATGCCCCTAATCATGACCTTGTGTATGGCGACCCTAGGTGTAGTGTG
ATAGGCAGAAAGAGGGAGAGAGAGGGAGAAAGGGGCTAGAGAGGGAGAGA
GAAGGAGGGAGGGTGTTTTCCATGCAGGCTGCGTAAGACGGTAGATTGAG
AAACATCATTATTGTTCCCGGTAGCCGATAGAGAGTATGGGTGAAGGTAA
AGGAGGAAGGGAGAGATGATTCGAACGGCCGTATATAAAAGGCTAGCGTT
TGCATGGAGGAGGAGAGGGGAGAGGCGCATCTGTATGTATGTATCCATGG
CACAAGAGAAAAAGAACCAGCAGTCATAACACTAGGAAAAGAAGAAGCAA
CTGGAGAAGAGGCGGAAATGGGACATTTAATCACCCAGAAGTGTATGATT
ATATCGTATACAAATGAAACGAATAGGGCAGGGACTCGACAAAAAAAGCG
GCAGCACCATCATTAACAACAAGAACGAGACAAGGTGCACAAGACACACT
ATACGAACAAAAAGAAAAAGAATAGCGAGAGGAAAGCAAGTAGGATGAGG
AAGAAAAAGGGAAGGTTGGGTGGCAGTAAGTGCGAGGGTTGTACACGATA
AATCAAAGACGCAAAAGCACCCGGAAATTGATGAGAATAGTCAGACTAGA
AGTCAACCCCAGAAGAGGAACTACCCTGTATACCTCTTTCTCTCTTTCAC
TCGTGTCCAAAACGCAGTCAAAGACCAACGCAGGCAGAAAGACGCGAATT
TTCCAATGAAAAGCAGAGACAGAGGCCTTGGTCGCTCGGGATAGAACGAA
TTGTTGATTCTTCCTCTCTTATTTTTGCTTCCCTTCTCTTTTGGGTCCTC
TGTATCGTTGTTGTCGTTACCGTTGCTCTTATGTTACAAAAAAACGCTAT
TCTGCTGGTCTCGCTCTTCCATACTTGCTTCCCTACTCTATAGCCCAATC
GCCCTATTACATTTTTCACTCTGCATATACGAAAAAATCATCTTGGTTTC
CCACCCTCTTTTTCAGACTCTGGTGTCTCATGTTGTTGCATTTACTCTTC
TTTCTTATCTCCCTCGCTATCTCCTCTTTTCGCTTTGTGTATCGGCTGAC
ATAGAGTGCTCATCTGGAGTTTGTCTCCGCTTTCTCTCCCTCTTCTCACA
TCCTTTGGGTGGTGAAGATCAAAGCGATGTGTACTGTACGAGGCCCCTCC
TCCTCCTCTCCCTCCCTCTCCTGAGTGTATCTCTGATCGACACTCCCTCC
CTTCCTTCATCTACCAACACAAATATAGTACATATGCTCCCACCTCCCCC
CCCCCTTACCCCTTCTGCAGACAATCCACGAACTCCCTCACGCACTGAAA
AGCCCGAGAGGAACCGGCATCCCAATTCTCATAAAACGTCCCATGCCCCC
CCTTCTCCACATGCAGTACCGTGGCCAGCTGACATTCCTCCACCAGCTTC
TTGAATTGGAAGGTAAAATGACCCGGGAAGCACATATCGTCGTAGGCATT
AATGTACACCACGGGTCGGGCAATCTTGCCGAGGACCAGCGCCGGGTTAT
GGGTTTGAAAATACTCTTCTCTAGAGGCCTTCCCGTCAAAGATATGCAAG
TGCTCATGGAACTCCTGCATGGACCTGCTCCTCTTCAACCGCTGCAAGCC
TGGCCCATCCTCTTTCTTCAAGGTCTCCTCGTTCCGCTCCAGGAAGAAGC
TCTTGGCATGGGTGGTCACCACTAAATCCGCCAATGGCGTCATGTGCTGC
AAGGACAGCTCCATATCATATCCCCCTGAGATCAGAACCCCGCCCTCCAA
CTCACTCTCTTCCCCTGCATCCCCCAAATACCTGGCCAACAAACTCGAGC
CCGCGCTAATCCCCACGCCGTAAAAACAATTATTCGGGAAAAAGTCCCTC
ATCCGAGACAAAATAAATCGAAAATCGCACTGGTCCCCGACCGTATTGAA
CCGCGCTCTCGACAAGGGCATGTCGTTTCCCCTCCGGTTGAAGACACATG
CTATGTATCCGCACGTCTCTGTCAGAAACGTGCAAAATTCATACAAATCT
GCCGCTGTTTGGAAGACACCATGGCAAATGACCACGATGGGCGGAGGCGG
GTCATCAGGCGGCATACTGGTAGCAAGAGCCTGGATAGTTGCTCCCATCT
CTTCCTCCCTCCTGTCCTCCTTGCACTGCATCAATGCCTCGCGCATCGGC
CCCGGGGGTGCCATGTAAAACAAGGAGACAGATTCGCCATCAGGTAGCTG
AAGCACCTCACGGGCAAAGCCTCGCAAGTGCTTGTTGCGCCAGCTTCGAT
ACAGGTAGACAATCGCTTGCGCCCATGCCCCACACGCCCAAGAGGGAGGT
CGATAGTCCTTCTGGAAGGAAGGGCAACGACGGACAATGTTGCGCATGAT
GGGGTGCGAACCCACGTAGACCCGGATGGGATACCGAAGGGTGAGTTTGA
GGAGGGAGGCGGAGAGGAAAAGAATGGCGAGGCAGAGGCGGGGGATCAGG
ACTTCTAACGTCCAAGCGGCGGCAATGTCCCCAATGTCACATAGAGGGCT
GACGCCCCGGATGGCCATGCCCACAGTCATGGGTTAGGAAGGGGCTGGCT
TCTGTATCCGTGGCTGAGGGCAGAGGTGGTACGTAGAACAATACCAGCCC
GTGTACGCTTCACCACGCCCCGCTCGAGCTCTGGAGGACAACCCTAGGAA
CAACAATATCGACGAGACCAGGGATTCCGGTGGGTAAGACGAAACGCGAG
ACCAGCAAATTGGATAAATGAATGCGTCGAGATGCAAGGCAGCAGGCCGT
GAGGGGGCAGGGCACAGAAGGAGGCAGCCTGTGGAAGTATGCTTGGGAAG
GGTAAGAGGTGATTAAGAAACAGGATATAAATCACATCATGAAGGGATAT
CTCGCATGCGCACTTCTATACGCGTGCTCGACAGCATGGCAGAGTGTTGT
TAGATCTCGGAACAATGAGATGTGGTGGGAGAAGCGAGCAAATCCGACTC
GTGCTTGGAGCCTTTCGAAACCCGAGCAAAAACGGCCACGTACCAACACA
ACAACACTACACCCACCCGTAGATCAGCATCACACGGAAAGCCGTCAAGA
AGGCAAAGCCAGGCATGCACGCGCGTGCCCCATGTCCAAGCTGAAGAGGA
ATCATCACCCACGTGGCTCACCA back to topprotein sequence of NO05G04680.1 >NO05G04680.1-protein ID=NO05G04680.1-protein|Name=NO05G04680.1|organism=Nannochloropsis oceanica|type=polypeptide|length=306bp
MVLIGVGSDNWVHASAGAPPSAAAAVGAAAGAPAGGAAGAVLPIPGGGTV
DLHIVWPDEDGFHDWLEEGEGQMIGEEEEEEPEEGEEDMSTLHAHLQHPH
HTENNMEDDDENTSHEEEDDPPPLSLPMSLYPSPAAASVVLIGPLPSPMS
PLSSSSPHYHEHFFPYYEDDQEQEQQQQQQMQLLSSHRHRPERGEAAAAV
AAAPAAVAAADAIVNDDFTLPSPLFPSSALSHHHQNNYEEDSGRQDFAAL
ALSSPTSSTATAASAATTAFLRERHGWFRQPPHRDLTLIPLTPGSREERG
KGEKE* back to topmRNA from alignment at chr5:1216720..1221263- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO05G04680.1 ID=NO05G04680.1|Name=NO05G04680.1|organism=Nannochloropsis oceanica|type=mRNA|length=4544bp|location=Sequence derived from alignment at chr5:1216720..1221263- (Nannochloropsis oceanica)
AGGCATACCCCGGTGCTTCATCGCCCATCAGTCATTTTCATCATCTTGAC
CTCCTGACTCATATGCTCTTGGGTTTGTTAGTCCGATATATGAGTACTCC
CAGCCAGCACTAACCGCAATAGCGTCCTCTGCATCTACACCCACGAACTT
TCTTAATCCAAACGAGAACATGGTTCTCATTGGCGTGGGCAGTGACAATT
GGGTTCATGCCTCTGCCGGCGCGCCTCCCTCTGCAGCTGCCGCGGTGGGT
GCTGCCGCGGGTGCTCCAGCTGGTGGTGCTGCCGGTGCCGTGCTACCCAT
TCCTGGTGGTGGGACCGTTGATCTGCATATTGTCTGGCCCGACGAGGACG
GCTTCCACGATTGGCTTGAGGAAGGGGAGGGGCAGATGATAGGCGAGGAG
GAGGAGGAGGAGCCGGAGGAGGGGGAGGAGGATATGAGGTACGTGTGACA
AGTCATGCATTTTGCATCAGCAAATGGAATGACAGAATTAATGTTTCACT
TACTTCGGAAATTCCAAATCTGCTATCTATCAGCTTGTCATCTTGCGCAG
TACCACCGTTCCTAACACCCTTCCTCTCCTCTTATTCCGCCTCTTCCATC
GCACATCAGCACGCTTCACGCCCATCTCCAACATCCTCACCATACCGAGA
ACAACATGGAGGACGATGACGAAAACACCTCCCACGAGGAAGAAGATGAC
CCGCCACCCCTGAGCCTCCCTATGTCTTTGTACCCTTCTCCTGCTGCAGC
TTCTGTCGTGCTTATTGGCCCCCTCCCTTCGCCCATGTCTCCACTCTCCT
CCTCCTCGCCGCATTACCACGAGCATTTTTTCCCTTACTATGAGGATGAC
CAGGAGCAAGAACAGCAGCAGCAGCAGCAGATGCAGTTACTTAGTTCTCA
CCGACATCGACCAGAGAGGGGCGAGGCCGCAGCTGCGGTTGCTGCTGCCC
CGGCTGCTGTTGCTGCTGCAGATGCCATTGTCAACGACGACTTCACCCTC
CCCTCCCCCCTTTTCCCCTCTTCCGCCCTCTCCCATCACCACCAGAACAA
TTATGAGGAAGACAGCGGTCGACAAGATTTCGCTGCCCTCGCCCTCTCCA
GCCCAACTAGCTCCACTGCTACCGCTGCTTCTGCTGCTACTACTGCTTTC
CTGAGAGAAAGACACGGTTGGTTCCGACAGCCACCACACCGTGACCTGAC
ACTCATCCCACTCACGCCCGGGAGCAGAGAGGAAAGGGGAAAGGGGGAGA
AAGAGTAGTTTGTGTTAATGGAGGGGAAAGAAAAGAGGGAGGGGCGATTG
GGGGAAGGGGGGGGGGGGACTTTCTTGACGTGAGGGAGGAAAACGAGGAG
GAGGGGCGTGAGTGTAATATCTGCATGCCCCTAATCATGACCTTGTGTAT
GGCGACCCTAGGTGTAGTGTGATAGGCAGAAAGAGGGAGAGAGAGGGAGA
AAGGGGCTAGAGAGGGAGAGAGAAGGAGGGAGGGTGTTTTCCATGCAGGC
TGCGTAAGACGGTAGATTGAGAAACATCATTATTGTTCCCGGTAGCCGAT
AGAGAGTATGGGTGAAGGTAAAGGAGGAAGGGAGAGATGATTCGAACGGC
CGTATATAAAAGGCTAGCGTTTGCATGGAGGAGGAGAGGGGAGAGGCGCA
TCTGTATGTATGTATCCATGGCACAAGAGAAAAAGAACCAGCAGTCATAA
CACTAGGAAAAGAAGAAGCAACTGGAGAAGAGGCGGAAATGGGACATTTA
ATCACCCAGAAGTGTATGATTATATCGTATACAAATGAAACGAATAGGGC
AGGGACTCGACAAAAAAAGCGGCAGCACCATCATTAACAACAAGAACGAG
ACAAGGTGCACAAGACACACTATACGAACAAAAAGAAAAAGAATAGCGAG
AGGAAAGCAAGTAGGATGAGGAAGAAAAAGGGAAGGTTGGGTGGCAGTAA
GTGCGAGGGTTGTACACGATAAATCAAAGACGCAAAAGCACCCGGAAATT
GATGAGAATAGTCAGACTAGAAGTCAACCCCAGAAGAGGAACTACCCTGT
ATACCTCTTTCTCTCTTTCACTCGTGTCCAAAACGCAGTCAAAGACCAAC
GCAGGCAGAAAGACGCGAATTTTCCAATGAAAAGCAGAGACAGAGGCCTT
GGTCGCTCGGGATAGAACGAATTGTTGATTCTTCCTCTCTTATTTTTGCT
TCCCTTCTCTTTTGGGTCCTCTGTATCGTTGTTGTCGTTACCGTTGCTCT
TATGTTACAAAAAAACGCTATTCTGCTGGTCTCGCTCTTCCATACTTGCT
TCCCTACTCTATAGCCCAATCGCCCTATTACATTTTTCACTCTGCATATA
CGAAAAAATCATCTTGGTTTCCCACCCTCTTTTTCAGACTCTGGTGTCTC
ATGTTGTTGCATTTACTCTTCTTTCTTATCTCCCTCGCTATCTCCTCTTT
TCGCTTTGTGTATCGGCTGACATAGAGTGCTCATCTGGAGTTTGTCTCCG
CTTTCTCTCCCTCTTCTCACATCCTTTGGGTGGTGAAGATCAAAGCGATG
TGTACTGTACGAGGCCCCTCCTCCTCCTCTCCCTCCCTCTCCTGAGTGTA
TCTCTGATCGACACTCCCTCCCTTCCTTCATCTACCAACACAAATATAGT
ACATATGCTCCCACCTCCCCCCCCCCTTACCCCTTCTGCAGACAATCCAC
GAACTCCCTCACGCACTGAAAAGCCCGAGAGGAACCGGCATCCCAATTCT
CATAAAACGTCCCATGCCCCCCCTTCTCCACATGCAGTACCGTGGCCAGC
TGACATTCCTCCACCAGCTTCTTGAATTGGAAGGTAAAATGACCCGGGAA
GCACATATCGTCGTAGGCATTAATGTACACCACGGGTCGGGCAATCTTGC
CGAGGACCAGCGCCGGGTTATGGGTTTGAAAATACTCTTCTCTAGAGGCC
TTCCCGTCAAAGATATGCAAGTGCTCATGGAACTCCTGCATGGACCTGCT
CCTCTTCAACCGCTGCAAGCCTGGCCCATCCTCTTTCTTCAAGGTCTCCT
CGTTCCGCTCCAGGAAGAAGCTCTTGGCATGGGTGGTCACCACTAAATCC
GCCAATGGCGTCATGTGCTGCAAGGACAGCTCCATATCATATCCCCCTGA
GATCAGAACCCCGCCCTCCAACTCACTCTCTTCCCCTGCATCCCCCAAAT
ACCTGGCCAACAAACTCGAGCCCGCGCTAATCCCCACGCCGTAAAAACAA
TTATTCGGGAAAAAGTCCCTCATCCGAGACAAAATAAATCGAAAATCGCA
CTGGTCCCCGACCGTATTGAACCGCGCTCTCGACAAGGGCATGTCGTTTC
CCCTCCGGTTGAAGACACATGCTATGTATCCGCACGTCTCTGTCAGAAAC
GTGCAAAATTCATACAAATCTGCCGCTGTTTGGAAGACACCATGGCAAAT
GACCACGATGGGCGGAGGCGGGTCATCAGGCGGCATACTGGTAGCAAGAG
CCTGGATAGTTGCTCCCATCTCTTCCTCCCTCCTGTCCTCCTTGCACTGC
ATCAATGCCTCGCGCATCGGCCCCGGGGGTGCCATGTAAAACAAGGAGAC
AGATTCGCCATCAGGTAGCTGAAGCACCTCACGGGCAAAGCCTCGCAAGT
GCTTGTTGCGCCAGCTTCGATACAGGTAGACAATCGCTTGCGCCCATGCC
CCACACGCCCAAGAGGGAGGTCGATAGTCCTTCTGGAAGGAAGGGCAACG
ACGGACAATGTTGCGCATGATGGGGTGCGAACCCACGTAGACCCGGATGG
GATACCGAAGGGTGAGTTTGAGGAGGGAGGCGGAGAGGAAAAGAATGGCG
AGGCAGAGGCGGGGGATCAGGACTTCTAACGTCCAAGCGGCGGCAATGTC
CCCAATGTCACATAGAGGGCTGACGCCCCGGATGGCCATGCCCACAGTCA
TGGGTTAGGAAGGGGCTGGCTTCTGTATCCGTGGCTGAGGGCAGAGGTGG
TACGTAGAACAATACCAGCCCGTGTACGCTTCACCACGCCCCGCTCGAGC
TCTGGAGGACAACCCTAGGAACAACAATATCGACGAGACCAGGGATTCCG
GTGGGTAAGACGAAACGCGAGACCAGCAAATTGGATAAATGAATGCGTCG
AGATGCAAGGCAGCAGGCCGTGAGGGGGCAGGGCACAGAAGGAGGCAGCC
TGTGGAAGTATGCTTGGGAAGGGTAAGAGGTGATTAAGAAACAGGATATA
AATCACATCATGAAGGGATATCTCGCATGCGCACTTCTATACGCGTGCTC
GACAGCATGGCAGAGTGTTGTTAGATCTCGGAACAATGAGATGTGGTGGG
AGAAGCGAGCAAATCCGACTCGTGCTTGGAGCCTTTCGAAACCCGAGCAA
AAACGGCCACGTACCAACACAACAACACTACACCCACCCGTAGATCAGCA
TCACACGGAAAGCCGTCAAGAAGGCAAAGCCAGGCATGCACGCGCGTGCC
CCATGTCCAAGCTGAAGAGGAATCATCACCCACGTGGCTCACCA back to topCoding sequence (CDS) from alignment at chr5:1216720..1221263- >NO05G04680.1 ID=NO05G04680.1|Name=NO05G04680.1|organism=Nannochloropsis oceanica|type=CDS|length=918bp|location=Sequence derived from alignment at chr5:1216720..1221263- (Nannochloropsis oceanica)
ATGGTTCTCATTGGCGTGGGCAGTGACAATTGGGTTCATGCCTCTGCCGG
CGCGCCTCCCTCTGCAGCTGCCGCGGTGGGTGCTGCCGCGGGTGCTCCAG
CTGGTGGTGCTGCCGGTGCCGTGCTACCCATTCCTGGTGGTGGGACCGTT
GATCTGCATATTGTCTGGCCCGACGAGGACGGCTTCCACGATTGGCTTGA
GGAAGGGGAGGGGCAGATGATAGGCGAGGAGGAGGAGGAGGAGCCGGAGG
AGGGGGAGGAGGATATGAGCACGCTTCACGCCCATCTCCAACATCCTCAC
CATACCGAGAACAACATGGAGGACGATGACGAAAACACCTCCCACGAGGA
AGAAGATGACCCGCCACCCCTGAGCCTCCCTATGTCTTTGTACCCTTCTC
CTGCTGCAGCTTCTGTCGTGCTTATTGGCCCCCTCCCTTCGCCCATGTCT
CCACTCTCCTCCTCCTCGCCGCATTACCACGAGCATTTTTTCCCTTACTA
TGAGGATGACCAGGAGCAAGAACAGCAGCAGCAGCAGCAGATGCAGTTAC
TTAGTTCTCACCGACATCGACCAGAGAGGGGCGAGGCCGCAGCTGCGGTT
GCTGCTGCCCCGGCTGCTGTTGCTGCTGCAGATGCCATTGTCAACGACGA
CTTCACCCTCCCCTCCCCCCTTTTCCCCTCTTCCGCCCTCTCCCATCACC
ACCAGAACAATTATGAGGAAGACAGCGGTCGACAAGATTTCGCTGCCCTC
GCCCTCTCCAGCCCAACTAGCTCCACTGCTACCGCTGCTTCTGCTGCTAC
TACTGCTTTCCTGAGAGAAAGACACGGTTGGTTCCGACAGCCACCACACC
GTGACCTGACACTCATCCCACTCACGCCCGGGAGCAGAGAGGAAAGGGGA
AAGGGGGAGAAAGAGTAG back to top
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