NO05G04670.2, NO05G04670.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G04670.2
Unique NameNO05G04670.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2518
Alignment locationchr5:1213998..1216698 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1213998..1216698 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO05G04670.2 vs.
Match: XP_005855712.1 (hypothetical protein NGA_0605600 [Nannochloropsis gaditana CCMP526]; EKU20634.1 hypothetical protein NGA_0605600 [Nannochloropsis gaditana CCMP526]; EWM27972.1 Protein of unknown function DUF1118 [Nannochloropsis gaditana])

HSP 1 Score: 453.4 bits (1165), Expect = 7.700e-124
Identity = 313/428 (73.13%), Postives = 340/428 (79.44%), Query Frame = 0
Query:    1 MKTFAVLTLGSLAMSQAFMAPSPAAFGPISRSAVRSSA--GRSMRMENFNLPVGEDQAENVPTSMLGEANYRKFVASYKPDGMIVGGARYPLFRRVSELKLLSLTAETGLLTRLEELGLKLSDLEKLLPLAEELQLLQLAEKNQDLILQTLAPIAIEQAPALLPILTAVLRTPPTTFYAVAAAALAAEAGIVLVSGNPLIDVLAGIPLVGVAAVSAVAGTILSSGISVPSAGPRKIRSVSSSSSSADVTPKFKVGGGAKSGRVKAAKPINAPVVTVAPPKKASAPVVRGPLSAPARSGASTGVKA---PAPKAAPAVK---KAAAAPKAAPAAKKATPAAKAAPAVKKAAPAAKKAAPAAK-----KAAPAAKKAAPAAKKVAPAATVAVKKAAPAPKKASPLLAVKRVPVAAGKGSLGNIPK--AKK 414
            MKTFAVLTL SLAMSQAF+AP+PAAFG  SRS VRS A   RSM+MENFNLP+GEDQAENVP+++LGEANYRKFVASYKPDGMIVGGARYPLFRRVSELKLLSLTAETGLL+RLEELGL+LSDLEKLLPL EEL+LL LAEKNQ+LILQTLAPIAIEQAPALLPILT VLRTPP TF+AVAAAALAAEAG+VLVSGNPLIDVLAGIPLVG+AAVSA  GTILSSG+ +PSA PR+I   SSS   ADVTP FKVGGG K GRVKAAK + +  V VAPPKK++APVV GPLSAPAR GA T   A   P+ KA PAVK   K+ A P A PA K AT A+ A PA K AA  A K APAAK     KAAPA +K A  A K A  A     KA PA  KASPLL+ K  P A+GKGSL NI K  AKK
Sbjct:    1 MKTFAVLTLVSLAMSQAFLAPTPAAFGS-SRSGVRSMATGARSMKMENFNLPIGEDQAENVPSTILGEANYRKFVASYKPDGMIVGGARYPLFRRVSELKLLSLTAETGLLSRLEELGLRLSDLEKLLPLVEELELLSLAEKNQELILQTLAPIAIEQAPALLPILTGVLRTPPATFFAVAAAALAAEAGVVLVSGNPLIDVLAGIPLVGLAAVSAATGTILSSGVPIPSAAPRRI---SSSGGGADVTPAFKVGGG-KKGRVKAAKVVASAPVAVAPPKKSAAPVVLGPLSAPARGGAPTAPAARPTPSLKAKPAVKPAVKSVAKPAAKPAVKLATKAS-AKPAAKPAAKPAAKPAPAAKKPLGIKAAPAPQKVAAVAVKKAATAPAPAPKAVPAAAKASPLLSAK-APAASGKGSLANIAKKVAKK 421          
The following BLAST results are available for this feature:
BLAST of NO05G04670.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855712.17.700e-12473.13hypothetical protein NGA_0605600 [Nannochloropsis ... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G04670NO05G04670Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G04670.2NO05G04670.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G04670.2.cds1NO05G04670.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G04670.2.cds2NO05G04670.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G04670.2 ID=NO05G04670.2|Name=NO05G04670.2|organism=Nannochloropsis oceanica|type=mRNA|length=2518bp
TGGATGTTTGATAAAAATTGATGGATAAACAGTGGGCTGCATGTTTAAGA
ATCGAATGGAAAAATCATGTCAGTGGGCGATGCGGCAAGGAGTGGCGCAT
TTTCCCTCACGCCTCATTCGCCTTCGTCCCACAACAAGCAGCCAGGCGAG
TCCGAGGAGAACATTGGATCCTGGTCAGAGTAGCGACGGGAGTGGCGGTG
GCCCCTGCCGTGCGGGCGTATTATTTGTTAGTTTACTGCGCTTGTGTACT
GGATAGACGCAAATAACATAATGGGAGCGTATGGTCATGGTTGACCTGAG
AATCTACCAGAGCCAAGCAAGCAAAGGTCTCCCTTGTGCTCGCCAGCACT
GACGAGACGAGTCGGATCAGAACTGACCACATTTTGATCTTCTTCATCCT
CCCACCTACACAGCAACATTAAGAAACTCAGGGATGTTTACCATAAGGCG
GTGATGAGAGGCTTTCATAATTCTACCCTCCCTTCACACGGGCTTGGACG
TTGTCCGAGCCAATCGCCAGTCAACCTGCGCCTATCCCCCACACCAGGCT
GACCACATTCTTGTTTCTCTCCTTGTCGGTCCTACCACACATAGATCACA
GTCTCCTATCCCGTTTCCACCGTCACAATGAAGACCTTTGCTGTGCTTAC
GCTGGGTTCTCTGGCCATGTCCCAGGCCTTTATGGCGCCCTCCCCAGCCG
CATTTGGCCCCATCAGCAGATCAGCGGTGCGATCTTCCGCTGGTCGCAGC
ATGAGGATGGAGAACTTTAACCTGCCTGTGGGAGAGGACCAGGCCGAAAA
CGTGCCTACCAGCATGCTGGGCGAGGCCAACTATCGCAAGTTCGTGGCGT
CCTACAAGCCTGATGGCATGATCGTCGGCGGCGCCCGCTACCCCCTGTTC
AGGCGCGTCTCGGAGCTCAAGCTTCTGTCCCTGACTGCCGAGACTGGCCT
CTTGACTCGCCTGGAAGAGTTGGGCCTGAAGTTGAGTGACCTGGAGAAGT
TGCTTCCCTTGGCAGAGGAGCTCCAGTTGTTGCAACTGGCCGAGAAAAAC
CAAGACCTGATTCTCCAGACCCTGGCCCCTATTGCTATCGAACAAGCCCC
TGCCCTCCTCCCCATCCTCACCGCTGTGCTGCGCACGCCTCCCACAACCT
TTTACGCCGTCGCTGCAGCTGCTCTGGCCGCTGAGGCGGGCATTGTCCTC
GTGAGCGGTAACCCTCTGATTGACGTCCTTGCTGGCATCCCCCTTGTGGG
CGTGGCCGCCGTCTCTGCTGTGGCCGGCACCATTCTGTCCTCCGGCATCA
GTGTCCCGTCCGCTGGCCCCCGCAAGATCAGGTCTGTCTCCTCTTCTTCC
TCCTCTGCCGATGTGACCCCGAAGTTCAAGGTCGGTGGCGGTGCCAAGAG
CGGGAGGGTGAAGGCAGCCAAGCCCATTAATGCCCCGGTCGTGACCGTCG
CTCCCCCCAAGAAGGCCTCCGCTCCCGTGGTCAGGGGTCCCCTCTCGGCC
CCCGCCCGCAGTGGCGCTTCCACCGGCGTCAAGGCTCCAGCCCCGAAGGC
CGCGCCCGCCGTCAAAAAGGCTGCCGCTGCACCCAAAGCCGCGCCTGCGG
CCAAAAAGGCTACACCCGCTGCCAAGGCCGCGCCTGCTGTTAAGAAGGCC
GCGCCCGCTGCCAAGAAGGCCGCACCCGCTGCCAAGAAGGCCGCACCCGC
TGCCAAGAAGGCCGCACCCGCTGCCAAGAAGGTTGCCCCAGCCGCGACTG
TCGCCGTGAAGAAAGCTGCGCCGGCCCCTAAGAAAGCCTCGCCTTTATTG
GCGGTCAAGAGGGTCCCTGTGGCGGCCGGGAAGGGCTCGTTGGGCAACAT
TCCCAAGGCCAAGAAGTAAAGCAGTGGAACAAGATAGTGTTTGATTTATT
GAAAGGGGCTTCGGATGTTGCCTGGTGGGCGAAAGATGAAGAAAGGAGGG
AGGGAGGCAAGGGAGGAGGAAAGCACGTACAAGGATGCATGCGCACGCTT
TTTTGGTGGTGATCTTTGCTGGTTTAATGTTCTTCCCGCTCACTGAAGTA
TAAAATAGCGATCCACGATTAGTCATAAAGTGGGAAGGAAAAAATCTGTG
GGAAAGAGAGCGCGTGTGAACGTGCGTGTATGGATGTAAGAGAGGAGTGT
CTGCGTCATGTTGCACCCTCTTCAGACATCCATCTGGTGGGCGGGTGCAG
GCTCAAAACTGGATGTGTTTCTATGTGCTATTTGTCGGGTGGTTTTTGTG
TCATCCTTAGTTGGTGGCCTTCGTGTGCCTAGGGTCTTGCTATTTTGAGT
GCATGGGGAAGTAAGGTAGGAAGGAAGGAGGGGGGGGAGGGCAAGCGAGT
GAGGCTGCCTAAATTGATATCGGTTTTTTTCGTGCTGCCCAGGCATGCAC
TTCAACCGCGAAGGAAGAAAAAAGAAAACATGAGAAACAGCAGGAAACCA
ACGACAATCAGAAGCTTGCTTCCTGCTTTGTCAGGTACGATTTGAGCGCT
TGAATTCAAGGGGAGGGG
back to top

protein sequence of NO05G04670.2

>NO05G04670.2-protein ID=NO05G04670.2-protein|Name=NO05G04670.2|organism=Nannochloropsis oceanica|type=polypeptide|length=414bp
MKTFAVLTLGSLAMSQAFMAPSPAAFGPISRSAVRSSAGRSMRMENFNLP
VGEDQAENVPTSMLGEANYRKFVASYKPDGMIVGGARYPLFRRVSELKLL
SLTAETGLLTRLEELGLKLSDLEKLLPLAEELQLLQLAEKNQDLILQTLA
PIAIEQAPALLPILTAVLRTPPTTFYAVAAAALAAEAGIVLVSGNPLIDV
LAGIPLVGVAAVSAVAGTILSSGISVPSAGPRKIRSVSSSSSSADVTPKF
KVGGGAKSGRVKAAKPINAPVVTVAPPKKASAPVVRGPLSAPARSGASTG
VKAPAPKAAPAVKKAAAAPKAAPAAKKATPAAKAAPAVKKAAPAAKKAAP
AAKKAAPAAKKAAPAAKKVAPAATVAVKKAAPAPKKASPLLAVKRVPVAA
GKGSLGNIPKAKK*
back to top

mRNA from alignment at chr5:1213998..1216698+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G04670.2 ID=NO05G04670.2|Name=NO05G04670.2|organism=Nannochloropsis oceanica|type=mRNA|length=2701bp|location=Sequence derived from alignment at chr5:1213998..1216698+ (Nannochloropsis oceanica)
TGGATGTTTGATAAAAATTGATGGATAAACAGTGGGCTGCATGTTTAAGA ATCGAATGGAAAAATCATGTCAGTGGGCGATGCGGCAAGGAGTGGCGCAT TTTCCCTCACGCCTCATTCGCCTTCGTCCCACAACAAGCAGCCAGGCGAG TCCGAGGAGAACATTGGATCCTGGTCAGAGTAGCGACGGGAGTGGCGGTG GCCCCTGCCGTGCGGGCGTATTATTTGTTAGTTTACTGCGCTTGTGTACT GGATAGACGCAAATAACATAATGGGAGCGTATGGTCATGGTTGACCTGAG AATCTACCAGAGCCAAGCAAGCAAAGGTCTCCCTTGTGCTCGCCAGCACT GACGAGACGAGTCGGATCAGAACTGACCACATTTTGATCTTCTTCATCCT CCCACCTACACAGCAACATTAAGAAACTCAGGGATGTTTACCATAAGGCG GTGATGAGAGGCTTTCATAATTCTACCCTCCCTTCACACGGGCTTGGACG TTGTCCGAGCCAATCGCCAGTCAACCTGCGCCTATCCCCCACACCAGGCT GACCACATTCTTGTTTCTCTCCTTGTCGGTCCTACCACACATAGATCACA GTCTCCTATCCCGTTTCCACCGTCACAATGAAGACCTTTGCTGTGCTTAC GCTGGGTTCTCTGGCCATGTCCCAGGCCTTTATGGCGCCCTCCCCAGCCG CATTTGGCCCCATCAGCAGATCAGCGGTGCGATCTTCCGCTGGTCGCAGC ATGAGGATGGAGAACTTTAACCTGCCTGTGGGAGAGGACCAGGCCGAAAA CGTGCCTACCAGCATGCTGGGCGAGGCCAACTATCGCAAGTTCGTGGCGT CCTACAAGCCTGATGGCATGATCGTCGGCGGCGCCCGCTACCCCCTGTTC AGGCGCGTCTCGGAGCTCAAGCTTCTGTCCCTGACTGCCGAGACTGGCCT CTTGACTCGCCTGGAAGAGTTGGGCCTGAAGTTGAGTGACCTGGAGAAGT TGCTTCCCTTGGCAGAGGAGCTCCAGTTGTTGCAACTGGCCGAGAAAAAC CAAGACCTGATTCTCCAGACCCTGGCCCCTATTGCTATCGAACAAGCCCC TGCCCTCCTCCCCATCCTCACCGCTGTGCTGCGCACGCCTCCCACAACCT TTTACGCCGTCGCTGCAGCTGCTCTGGCCGCTGAGGCGGGCATTGTCCTC GTGAGCGGTAACCCTCTGATTGACGTCCTTGCTGGCATCCCCCTTGTGGG CGTGGCCGCCGTCTCTGCTGTGGCCGGCACCATTCTGTCCTCCGGCATCA GTGTCCCGTCCGCTGGCCCCCGCAAGATCAGGTCTGTCTCCTCTTCTTCC TCCTCTGCCGATGTGACCCCGAAGTTCAAGGTCGGTGGCGGTGCCAAGAG CGGGAGGGTGAAGGCAGCCAAGCCCATTAATGCCCCGGTACGTCCTGATA AACTCATGTCATTTCCAGAGTCAATATCTGAACGGAGTCATCATCCTTTG CAATTTCCCTCTCGTCGCTCATCCTTAAGTGAATTTTGCTTCAAGTCAAC ACCAAGACAAGGAAGCGCCTCTCTGATAGCACCCAAAACCCTCCCCAACA CTTGATACAAATTTATGCAGGTCGTGACCGTCGCTCCCCCCAAGAAGGCC TCCGCTCCCGTGGTCAGGGGTCCCCTCTCGGCCCCCGCCCGCAGTGGCGC TTCCACCGGCGTCAAGGCTCCAGCCCCGAAGGCCGCGCCCGCCGTCAAAA AGGCTGCCGCTGCACCCAAAGCCGCGCCTGCGGCCAAAAAGGCTACACCC GCTGCCAAGGCCGCGCCTGCTGTTAAGAAGGCCGCGCCCGCTGCCAAGAA GGCCGCACCCGCTGCCAAGAAGGCCGCACCCGCTGCCAAGAAGGCCGCAC CCGCTGCCAAGAAGGTTGCCCCAGCCGCGACTGTCGCCGTGAAGAAAGCT GCGCCGGCCCCTAAGAAAGCCTCGCCTTTATTGGCGGTCAAGAGGGTCCC TGTGGCGGCCGGGAAGGGCTCGTTGGGCAACATTCCCAAGGCCAAGAAGT AAAGCAGTGGAACAAGATAGTGTTTGATTTATTGAAAGGGGCTTCGGATG TTGCCTGGTGGGCGAAAGATGAAGAAAGGAGGGAGGGAGGCAAGGGAGGA GGAAAGCACGTACAAGGATGCATGCGCACGCTTTTTTGGTGGTGATCTTT GCTGGTTTAATGTTCTTCCCGCTCACTGAAGTATAAAATAGCGATCCACG ATTAGTCATAAAGTGGGAAGGAAAAAATCTGTGGGAAAGAGAGCGCGTGT GAACGTGCGTGTATGGATGTAAGAGAGGAGTGTCTGCGTCATGTTGCACC CTCTTCAGACATCCATCTGGTGGGCGGGTGCAGGCTCAAAACTGGATGTG TTTCTATGTGCTATTTGTCGGGTGGTTTTTGTGTCATCCTTAGTTGGTGG CCTTCGTGTGCCTAGGGTCTTGCTATTTTGAGTGCATGGGGAAGTAAGGT AGGAAGGAAGGAGGGGGGGGAGGGCAAGCGAGTGAGGCTGCCTAAATTGA TATCGGTTTTTTTCGTGCTGCCCAGGCATGCACTTCAACCGCGAAGGAAG AAAAAAGAAAACATGAGAAACAGCAGGAAACCAACGACAATCAGAAGCTT GCTTCCTGCTTTGTCAGGTACGATTTGAGCGCTTGAATTCAAGGGGAGGG G
back to top

Coding sequence (CDS) from alignment at chr5:1213998..1216698+

>NO05G04670.2 ID=NO05G04670.2|Name=NO05G04670.2|organism=Nannochloropsis oceanica|type=CDS|length=1242bp|location=Sequence derived from alignment at chr5:1213998..1216698+ (Nannochloropsis oceanica)
ATGAAGACCTTTGCTGTGCTTACGCTGGGTTCTCTGGCCATGTCCCAGGC
CTTTATGGCGCCCTCCCCAGCCGCATTTGGCCCCATCAGCAGATCAGCGG
TGCGATCTTCCGCTGGTCGCAGCATGAGGATGGAGAACTTTAACCTGCCT
GTGGGAGAGGACCAGGCCGAAAACGTGCCTACCAGCATGCTGGGCGAGGC
CAACTATCGCAAGTTCGTGGCGTCCTACAAGCCTGATGGCATGATCGTCG
GCGGCGCCCGCTACCCCCTGTTCAGGCGCGTCTCGGAGCTCAAGCTTCTG
TCCCTGACTGCCGAGACTGGCCTCTTGACTCGCCTGGAAGAGTTGGGCCT
GAAGTTGAGTGACCTGGAGAAGTTGCTTCCCTTGGCAGAGGAGCTCCAGT
TGTTGCAACTGGCCGAGAAAAACCAAGACCTGATTCTCCAGACCCTGGCC
CCTATTGCTATCGAACAAGCCCCTGCCCTCCTCCCCATCCTCACCGCTGT
GCTGCGCACGCCTCCCACAACCTTTTACGCCGTCGCTGCAGCTGCTCTGG
CCGCTGAGGCGGGCATTGTCCTCGTGAGCGGTAACCCTCTGATTGACGTC
CTTGCTGGCATCCCCCTTGTGGGCGTGGCCGCCGTCTCTGCTGTGGCCGG
CACCATTCTGTCCTCCGGCATCAGTGTCCCGTCCGCTGGCCCCCGCAAGA
TCAGGTCTGTCTCCTCTTCTTCCTCCTCTGCCGATGTGACCCCGAAGTTC
AAGGTCGGTGGCGGTGCCAAGAGCGGGAGGGTGAAGGCAGCCAAGCCCAT
TAATGCCCCGGTCGTGACCGTCGCTCCCCCCAAGAAGGCCTCCGCTCCCG
TGGTCAGGGGTCCCCTCTCGGCCCCCGCCCGCAGTGGCGCTTCCACCGGC
GTCAAGGCTCCAGCCCCGAAGGCCGCGCCCGCCGTCAAAAAGGCTGCCGC
TGCACCCAAAGCCGCGCCTGCGGCCAAAAAGGCTACACCCGCTGCCAAGG
CCGCGCCTGCTGTTAAGAAGGCCGCGCCCGCTGCCAAGAAGGCCGCACCC
GCTGCCAAGAAGGCCGCACCCGCTGCCAAGAAGGCCGCACCCGCTGCCAA
GAAGGTTGCCCCAGCCGCGACTGTCGCCGTGAAGAAAGCTGCGCCGGCCC
CTAAGAAAGCCTCGCCTTTATTGGCGGTCAAGAGGGTCCCTGTGGCGGCC
GGGAAGGGCTCGTTGGGCAACATTCCCAAGGCCAAGAAGTAA
back to top
Synonyms
Publications