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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr5 | genome | chr5:1213998..1216698 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO05G04670.2 vs.
Match: XP_005855712.1 (hypothetical protein NGA_0605600 [Nannochloropsis gaditana CCMP526]; EKU20634.1 hypothetical protein NGA_0605600 [Nannochloropsis gaditana CCMP526]; EWM27972.1 Protein of unknown function DUF1118 [Nannochloropsis gaditana]) HSP 1 Score: 453.4 bits (1165), Expect = 7.700e-124 Identity = 313/428 (73.13%), Postives = 340/428 (79.44%), Query Frame = 0
Query: 1 MKTFAVLTLGSLAMSQAFMAPSPAAFGPISRSAVRSSA--GRSMRMENFNLPVGEDQAENVPTSMLGEANYRKFVASYKPDGMIVGGARYPLFRRVSELKLLSLTAETGLLTRLEELGLKLSDLEKLLPLAEELQLLQLAEKNQDLILQTLAPIAIEQAPALLPILTAVLRTPPTTFYAVAAAALAAEAGIVLVSGNPLIDVLAGIPLVGVAAVSAVAGTILSSGISVPSAGPRKIRSVSSSSSSADVTPKFKVGGGAKSGRVKAAKPINAPVVTVAPPKKASAPVVRGPLSAPARSGASTGVKA---PAPKAAPAVK---KAAAAPKAAPAAKKATPAAKAAPAVKKAAPAAKKAAPAAK-----KAAPAAKKAAPAAKKVAPAATVAVKKAAPAPKKASPLLAVKRVPVAAGKGSLGNIPK--AKK 414
MKTFAVLTL SLAMSQAF+AP+PAAFG SRS VRS A RSM+MENFNLP+GEDQAENVP+++LGEANYRKFVASYKPDGMIVGGARYPLFRRVSELKLLSLTAETGLL+RLEELGL+LSDLEKLLPL EEL+LL LAEKNQ+LILQTLAPIAIEQAPALLPILT VLRTPP TF+AVAAAALAAEAG+VLVSGNPLIDVLAGIPLVG+AAVSA GTILSSG+ +PSA PR+I SSS ADVTP FKVGGG K GRVKAAK + + V VAPPKK++APVV GPLSAPAR GA T A P+ KA PAVK K+ A P A PA K AT A+ A PA K AA A K APAAK KAAPA +K A A K A A KA PA KASPLL+ K P A+GKGSL NI K AKK
Sbjct: 1 MKTFAVLTLVSLAMSQAFLAPTPAAFGS-SRSGVRSMATGARSMKMENFNLPIGEDQAENVPSTILGEANYRKFVASYKPDGMIVGGARYPLFRRVSELKLLSLTAETGLLSRLEELGLRLSDLEKLLPLVEELELLSLAEKNQELILQTLAPIAIEQAPALLPILTGVLRTPPATFFAVAAAALAAEAGVVLVSGNPLIDVLAGIPLVGLAAVSAATGTILSSGVPIPSAAPRRI---SSSGGGADVTPAFKVGGG-KKGRVKAAKVVASAPVAVAPPKKSAAPVVLGPLSAPARGGAPTAPAARPTPSLKAKPAVKPAVKSVAKPAAKPAVKLATKAS-AKPAAKPAAKPAAKPAPAAKKPLGIKAAPAPQKVAAVAVKKAATAPAPAPKAVPAAAKASPLLSAK-APAASGKGSLANIAKKVAKK 421
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO05G04670.2 ID=NO05G04670.2|Name=NO05G04670.2|organism=Nannochloropsis oceanica|type=mRNA|length=2518bp TGGATGTTTGATAAAAATTGATGGATAAACAGTGGGCTGCATGTTTAAGA ATCGAATGGAAAAATCATGTCAGTGGGCGATGCGGCAAGGAGTGGCGCAT TTTCCCTCACGCCTCATTCGCCTTCGTCCCACAACAAGCAGCCAGGCGAG TCCGAGGAGAACATTGGATCCTGGTCAGAGTAGCGACGGGAGTGGCGGTG GCCCCTGCCGTGCGGGCGTATTATTTGTTAGTTTACTGCGCTTGTGTACT GGATAGACGCAAATAACATAATGGGAGCGTATGGTCATGGTTGACCTGAG AATCTACCAGAGCCAAGCAAGCAAAGGTCTCCCTTGTGCTCGCCAGCACT GACGAGACGAGTCGGATCAGAACTGACCACATTTTGATCTTCTTCATCCT CCCACCTACACAGCAACATTAAGAAACTCAGGGATGTTTACCATAAGGCG GTGATGAGAGGCTTTCATAATTCTACCCTCCCTTCACACGGGCTTGGACG TTGTCCGAGCCAATCGCCAGTCAACCTGCGCCTATCCCCCACACCAGGCT GACCACATTCTTGTTTCTCTCCTTGTCGGTCCTACCACACATAGATCACA GTCTCCTATCCCGTTTCCACCGTCACAATGAAGACCTTTGCTGTGCTTAC GCTGGGTTCTCTGGCCATGTCCCAGGCCTTTATGGCGCCCTCCCCAGCCG CATTTGGCCCCATCAGCAGATCAGCGGTGCGATCTTCCGCTGGTCGCAGC ATGAGGATGGAGAACTTTAACCTGCCTGTGGGAGAGGACCAGGCCGAAAA CGTGCCTACCAGCATGCTGGGCGAGGCCAACTATCGCAAGTTCGTGGCGT CCTACAAGCCTGATGGCATGATCGTCGGCGGCGCCCGCTACCCCCTGTTC AGGCGCGTCTCGGAGCTCAAGCTTCTGTCCCTGACTGCCGAGACTGGCCT CTTGACTCGCCTGGAAGAGTTGGGCCTGAAGTTGAGTGACCTGGAGAAGT TGCTTCCCTTGGCAGAGGAGCTCCAGTTGTTGCAACTGGCCGAGAAAAAC CAAGACCTGATTCTCCAGACCCTGGCCCCTATTGCTATCGAACAAGCCCC TGCCCTCCTCCCCATCCTCACCGCTGTGCTGCGCACGCCTCCCACAACCT TTTACGCCGTCGCTGCAGCTGCTCTGGCCGCTGAGGCGGGCATTGTCCTC GTGAGCGGTAACCCTCTGATTGACGTCCTTGCTGGCATCCCCCTTGTGGG CGTGGCCGCCGTCTCTGCTGTGGCCGGCACCATTCTGTCCTCCGGCATCA GTGTCCCGTCCGCTGGCCCCCGCAAGATCAGGTCTGTCTCCTCTTCTTCC TCCTCTGCCGATGTGACCCCGAAGTTCAAGGTCGGTGGCGGTGCCAAGAG CGGGAGGGTGAAGGCAGCCAAGCCCATTAATGCCCCGGTCGTGACCGTCG CTCCCCCCAAGAAGGCCTCCGCTCCCGTGGTCAGGGGTCCCCTCTCGGCC CCCGCCCGCAGTGGCGCTTCCACCGGCGTCAAGGCTCCAGCCCCGAAGGC CGCGCCCGCCGTCAAAAAGGCTGCCGCTGCACCCAAAGCCGCGCCTGCGG CCAAAAAGGCTACACCCGCTGCCAAGGCCGCGCCTGCTGTTAAGAAGGCC GCGCCCGCTGCCAAGAAGGCCGCACCCGCTGCCAAGAAGGCCGCACCCGC TGCCAAGAAGGCCGCACCCGCTGCCAAGAAGGTTGCCCCAGCCGCGACTG TCGCCGTGAAGAAAGCTGCGCCGGCCCCTAAGAAAGCCTCGCCTTTATTG GCGGTCAAGAGGGTCCCTGTGGCGGCCGGGAAGGGCTCGTTGGGCAACAT TCCCAAGGCCAAGAAGTAAAGCAGTGGAACAAGATAGTGTTTGATTTATT GAAAGGGGCTTCGGATGTTGCCTGGTGGGCGAAAGATGAAGAAAGGAGGG AGGGAGGCAAGGGAGGAGGAAAGCACGTACAAGGATGCATGCGCACGCTT TTTTGGTGGTGATCTTTGCTGGTTTAATGTTCTTCCCGCTCACTGAAGTA TAAAATAGCGATCCACGATTAGTCATAAAGTGGGAAGGAAAAAATCTGTG GGAAAGAGAGCGCGTGTGAACGTGCGTGTATGGATGTAAGAGAGGAGTGT CTGCGTCATGTTGCACCCTCTTCAGACATCCATCTGGTGGGCGGGTGCAG GCTCAAAACTGGATGTGTTTCTATGTGCTATTTGTCGGGTGGTTTTTGTG TCATCCTTAGTTGGTGGCCTTCGTGTGCCTAGGGTCTTGCTATTTTGAGT GCATGGGGAAGTAAGGTAGGAAGGAAGGAGGGGGGGGAGGGCAAGCGAGT GAGGCTGCCTAAATTGATATCGGTTTTTTTCGTGCTGCCCAGGCATGCAC TTCAACCGCGAAGGAAGAAAAAAGAAAACATGAGAAACAGCAGGAAACCA ACGACAATCAGAAGCTTGCTTCCTGCTTTGTCAGGTACGATTTGAGCGCT TGAATTCAAGGGGAGGGG back to topprotein sequence of NO05G04670.2 >NO05G04670.2-protein ID=NO05G04670.2-protein|Name=NO05G04670.2|organism=Nannochloropsis oceanica|type=polypeptide|length=414bp MKTFAVLTLGSLAMSQAFMAPSPAAFGPISRSAVRSSAGRSMRMENFNLP VGEDQAENVPTSMLGEANYRKFVASYKPDGMIVGGARYPLFRRVSELKLL SLTAETGLLTRLEELGLKLSDLEKLLPLAEELQLLQLAEKNQDLILQTLA PIAIEQAPALLPILTAVLRTPPTTFYAVAAAALAAEAGIVLVSGNPLIDV LAGIPLVGVAAVSAVAGTILSSGISVPSAGPRKIRSVSSSSSSADVTPKF KVGGGAKSGRVKAAKPINAPVVTVAPPKKASAPVVRGPLSAPARSGASTG VKAPAPKAAPAVKKAAAAPKAAPAAKKATPAAKAAPAVKKAAPAAKKAAP AAKKAAPAAKKAAPAAKKVAPAATVAVKKAAPAPKKASPLLAVKRVPVAA GKGSLGNIPKAKK* back to topmRNA from alignment at chr5:1213998..1216698+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO05G04670.2 ID=NO05G04670.2|Name=NO05G04670.2|organism=Nannochloropsis oceanica|type=mRNA|length=2701bp|location=Sequence derived from alignment at chr5:1213998..1216698+ (Nannochloropsis oceanica) TGGATGTTTGATAAAAATTGATGGATAAACAGTGGGCTGCATGTTTAAGA
ATCGAATGGAAAAATCATGTCAGTGGGCGATGCGGCAAGGAGTGGCGCAT
TTTCCCTCACGCCTCATTCGCCTTCGTCCCACAACAAGCAGCCAGGCGAG
TCCGAGGAGAACATTGGATCCTGGTCAGAGTAGCGACGGGAGTGGCGGTG
GCCCCTGCCGTGCGGGCGTATTATTTGTTAGTTTACTGCGCTTGTGTACT
GGATAGACGCAAATAACATAATGGGAGCGTATGGTCATGGTTGACCTGAG
AATCTACCAGAGCCAAGCAAGCAAAGGTCTCCCTTGTGCTCGCCAGCACT
GACGAGACGAGTCGGATCAGAACTGACCACATTTTGATCTTCTTCATCCT
CCCACCTACACAGCAACATTAAGAAACTCAGGGATGTTTACCATAAGGCG
GTGATGAGAGGCTTTCATAATTCTACCCTCCCTTCACACGGGCTTGGACG
TTGTCCGAGCCAATCGCCAGTCAACCTGCGCCTATCCCCCACACCAGGCT
GACCACATTCTTGTTTCTCTCCTTGTCGGTCCTACCACACATAGATCACA
GTCTCCTATCCCGTTTCCACCGTCACAATGAAGACCTTTGCTGTGCTTAC
GCTGGGTTCTCTGGCCATGTCCCAGGCCTTTATGGCGCCCTCCCCAGCCG
CATTTGGCCCCATCAGCAGATCAGCGGTGCGATCTTCCGCTGGTCGCAGC
ATGAGGATGGAGAACTTTAACCTGCCTGTGGGAGAGGACCAGGCCGAAAA
CGTGCCTACCAGCATGCTGGGCGAGGCCAACTATCGCAAGTTCGTGGCGT
CCTACAAGCCTGATGGCATGATCGTCGGCGGCGCCCGCTACCCCCTGTTC
AGGCGCGTCTCGGAGCTCAAGCTTCTGTCCCTGACTGCCGAGACTGGCCT
CTTGACTCGCCTGGAAGAGTTGGGCCTGAAGTTGAGTGACCTGGAGAAGT
TGCTTCCCTTGGCAGAGGAGCTCCAGTTGTTGCAACTGGCCGAGAAAAAC
CAAGACCTGATTCTCCAGACCCTGGCCCCTATTGCTATCGAACAAGCCCC
TGCCCTCCTCCCCATCCTCACCGCTGTGCTGCGCACGCCTCCCACAACCT
TTTACGCCGTCGCTGCAGCTGCTCTGGCCGCTGAGGCGGGCATTGTCCTC
GTGAGCGGTAACCCTCTGATTGACGTCCTTGCTGGCATCCCCCTTGTGGG
CGTGGCCGCCGTCTCTGCTGTGGCCGGCACCATTCTGTCCTCCGGCATCA
GTGTCCCGTCCGCTGGCCCCCGCAAGATCAGGTCTGTCTCCTCTTCTTCC
TCCTCTGCCGATGTGACCCCGAAGTTCAAGGTCGGTGGCGGTGCCAAGAG
CGGGAGGGTGAAGGCAGCCAAGCCCATTAATGCCCCGGTACGTCCTGATA
AACTCATGTCATTTCCAGAGTCAATATCTGAACGGAGTCATCATCCTTTG
CAATTTCCCTCTCGTCGCTCATCCTTAAGTGAATTTTGCTTCAAGTCAAC
ACCAAGACAAGGAAGCGCCTCTCTGATAGCACCCAAAACCCTCCCCAACA
CTTGATACAAATTTATGCAGGTCGTGACCGTCGCTCCCCCCAAGAAGGCC
TCCGCTCCCGTGGTCAGGGGTCCCCTCTCGGCCCCCGCCCGCAGTGGCGC
TTCCACCGGCGTCAAGGCTCCAGCCCCGAAGGCCGCGCCCGCCGTCAAAA
AGGCTGCCGCTGCACCCAAAGCCGCGCCTGCGGCCAAAAAGGCTACACCC
GCTGCCAAGGCCGCGCCTGCTGTTAAGAAGGCCGCGCCCGCTGCCAAGAA
GGCCGCACCCGCTGCCAAGAAGGCCGCACCCGCTGCCAAGAAGGCCGCAC
CCGCTGCCAAGAAGGTTGCCCCAGCCGCGACTGTCGCCGTGAAGAAAGCT
GCGCCGGCCCCTAAGAAAGCCTCGCCTTTATTGGCGGTCAAGAGGGTCCC
TGTGGCGGCCGGGAAGGGCTCGTTGGGCAACATTCCCAAGGCCAAGAAGT
AAAGCAGTGGAACAAGATAGTGTTTGATTTATTGAAAGGGGCTTCGGATG
TTGCCTGGTGGGCGAAAGATGAAGAAAGGAGGGAGGGAGGCAAGGGAGGA
GGAAAGCACGTACAAGGATGCATGCGCACGCTTTTTTGGTGGTGATCTTT
GCTGGTTTAATGTTCTTCCCGCTCACTGAAGTATAAAATAGCGATCCACG
ATTAGTCATAAAGTGGGAAGGAAAAAATCTGTGGGAAAGAGAGCGCGTGT
GAACGTGCGTGTATGGATGTAAGAGAGGAGTGTCTGCGTCATGTTGCACC
CTCTTCAGACATCCATCTGGTGGGCGGGTGCAGGCTCAAAACTGGATGTG
TTTCTATGTGCTATTTGTCGGGTGGTTTTTGTGTCATCCTTAGTTGGTGG
CCTTCGTGTGCCTAGGGTCTTGCTATTTTGAGTGCATGGGGAAGTAAGGT
AGGAAGGAAGGAGGGGGGGGAGGGCAAGCGAGTGAGGCTGCCTAAATTGA
TATCGGTTTTTTTCGTGCTGCCCAGGCATGCACTTCAACCGCGAAGGAAG
AAAAAAGAAAACATGAGAAACAGCAGGAAACCAACGACAATCAGAAGCTT
GCTTCCTGCTTTGTCAGGTACGATTTGAGCGCTTGAATTCAAGGGGAGGG
G back to topCoding sequence (CDS) from alignment at chr5:1213998..1216698+ >NO05G04670.2 ID=NO05G04670.2|Name=NO05G04670.2|organism=Nannochloropsis oceanica|type=CDS|length=1242bp|location=Sequence derived from alignment at chr5:1213998..1216698+ (Nannochloropsis oceanica) ATGAAGACCTTTGCTGTGCTTACGCTGGGTTCTCTGGCCATGTCCCAGGC CTTTATGGCGCCCTCCCCAGCCGCATTTGGCCCCATCAGCAGATCAGCGG TGCGATCTTCCGCTGGTCGCAGCATGAGGATGGAGAACTTTAACCTGCCT GTGGGAGAGGACCAGGCCGAAAACGTGCCTACCAGCATGCTGGGCGAGGC CAACTATCGCAAGTTCGTGGCGTCCTACAAGCCTGATGGCATGATCGTCG GCGGCGCCCGCTACCCCCTGTTCAGGCGCGTCTCGGAGCTCAAGCTTCTG TCCCTGACTGCCGAGACTGGCCTCTTGACTCGCCTGGAAGAGTTGGGCCT GAAGTTGAGTGACCTGGAGAAGTTGCTTCCCTTGGCAGAGGAGCTCCAGT TGTTGCAACTGGCCGAGAAAAACCAAGACCTGATTCTCCAGACCCTGGCC CCTATTGCTATCGAACAAGCCCCTGCCCTCCTCCCCATCCTCACCGCTGT GCTGCGCACGCCTCCCACAACCTTTTACGCCGTCGCTGCAGCTGCTCTGG CCGCTGAGGCGGGCATTGTCCTCGTGAGCGGTAACCCTCTGATTGACGTC CTTGCTGGCATCCCCCTTGTGGGCGTGGCCGCCGTCTCTGCTGTGGCCGG CACCATTCTGTCCTCCGGCATCAGTGTCCCGTCCGCTGGCCCCCGCAAGA TCAGGTCTGTCTCCTCTTCTTCCTCCTCTGCCGATGTGACCCCGAAGTTC AAGGTCGGTGGCGGTGCCAAGAGCGGGAGGGTGAAGGCAGCCAAGCCCAT TAATGCCCCGGTCGTGACCGTCGCTCCCCCCAAGAAGGCCTCCGCTCCCG TGGTCAGGGGTCCCCTCTCGGCCCCCGCCCGCAGTGGCGCTTCCACCGGC GTCAAGGCTCCAGCCCCGAAGGCCGCGCCCGCCGTCAAAAAGGCTGCCGC TGCACCCAAAGCCGCGCCTGCGGCCAAAAAGGCTACACCCGCTGCCAAGG CCGCGCCTGCTGTTAAGAAGGCCGCGCCCGCTGCCAAGAAGGCCGCACCC GCTGCCAAGAAGGCCGCACCCGCTGCCAAGAAGGCCGCACCCGCTGCCAA GAAGGTTGCCCCAGCCGCGACTGTCGCCGTGAAGAAAGCTGCGCCGGCCC CTAAGAAAGCCTCGCCTTTATTGGCGGTCAAGAGGGTCCCTGTGGCGGCC GGGAAGGGCTCGTTGGGCAACATTCCCAAGGCCAAGAAGTAA back to top
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