NO05G04660.1, NO05G04660.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G04660.1
Unique NameNO05G04660.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1220
Alignment locationchr5:1212772..1213991 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1212772..1213991 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO05G04660.1 vs.
Match: EWM27973.1 (Protein of unknown function DUF1499 [Nannochloropsis gaditana])

HSP 1 Score: 292.0 bits (746), Expect = 2.200e-75
Identity = 160/247 (64.78%), Postives = 185/247 (74.90%), Query Frame = 0 
Query:   64 PPSKLTPCPSSSSSSSSSSSSSSSSSSLFLSSLFSSRPPFSSSVSYSTLNTASTTARQLLCTLFPILLLPLSSAQAFPGLEDCTSESNPSFTIVTCARSGIDPVTSRPQKCLSAENCISSSSVQSASKYMSPWVYGGAAADTPSAWLSLVRAVEAQEGVKLVEVDNGSKQYYLRAEVGSKVPPGGIDDIEFLMSPKDGLVFFRSASRQMAFLYPLTQPVGDGGSIKKRIEAIQKVVGWSTVEDYYAF 311
            PP   TP     + S+SS+    S               F SSV+    +  S    + +  L P+ +LP  SA AFPGLEDCTSESNPSFTIVTC R GIDPV  RP++CLSAENCISS+SV + SKYMSPWV+ GA  D P+AWLSLVRAVEAQEG+K+VE+DNGSKQYYLRAE  SKVPPGG+DD+EFL+SPKDGLVFFRSASRQMAFLYPLTQPVGDGGSIKKR+E IQK VGWSTVE++Y +
Sbjct:   31 PPRLHTPLAHFETLSTSSAIDVHS---------------FPSSVASRLGSAISGRFLESVLLLLPLTVLP-PSACAFPGLEDCTSESNPSFTIVTCDRFGIDPVAGRPKRCLSAENCISSTSVNNPSKYMSPWVFNGAGEDVPTAWLSLVRAVEAQEGLKVVEIDNGSKQYYLRAEAPSKVPPGGVDDLEFLLSPKDGLVFFRSASRQMAFLYPLTQPVGDGGSIKKRLETIQKAVGWSTVEEFYDY 261
The following BLAST results are available for this feature:
BLAST of NO05G04660.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27973.12.200e-7564.78Protein of unknown function DUF1499 [Nannochlorops... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G04660NO05G04660Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G04660.1NO05G04660.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G04660.1.cds1NO05G04660.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G04660.1 ID=NO05G04660.1|Name=NO05G04660.1|organism=Nannochloropsis oceanica|type=mRNA|length=1220bp
ACAGGCTCAAAATGTGCAGCCTCCACAGTGCTCGCGCACGGCCTCCTGGC
TTGGTTCTCTTTCCCCTCCTAGCCATCGTCCCGACCCTCCTCTTGAACCC
TACCCATGCCTGGCGCCTATCAAATTACTTGCGGCAATCGTCGACAGCAG
CAGTAGAATCAATGTCAAGTGTTTCTCTATCTGCTCGCTTTGCGTCCATT
CCTCCTAGCAAGCTCACACCCTGCCCCTCTTCCTCCTCCTCCTCCTCCTC
CTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCCTCTTTCTCTCCTCTTTAT
TTTCTTCTCGCCCTCCTTTTTCCTCCTCAGTCTCCTATTCCACATTAAAT
ACTGCTTCTACAACTGCTCGTCAACTCCTCTGCACCCTTTTCCCCATACT
CCTCCTCCCCTTGTCTTCTGCCCAAGCCTTTCCGGGCCTCGAAGACTGCA
CCAGCGAGTCCAATCCTTCCTTCACCATCGTCACATGTGCCCGCTCCGGT
ATCGATCCAGTCACCTCACGCCCCCAAAAATGTCTATCGGCCGAAAACTG
TATCAGCAGCAGCAGTGTCCAATCTGCGAGCAAGTACATGTCTCCCTGGG
TGTACGGTGGTGCTGCTGCTGACACCCCGTCAGCATGGCTCTCCCTCGTT
CGTGCCGTCGAAGCCCAAGAGGGGGTGAAGCTCGTGGAGGTTGACAACGG
GAGCAAGCAATACTACCTGAGAGCAGAGGTGGGGAGTAAAGTGCCCCCGG
GCGGGATTGACGATATCGAATTCTTGATGTCGCCGAAGGATGGCTTGGTG
TTCTTTCGGTCAGCGTCGCGGCAGATGGCGTTTTTGTACCCGTTGACCCA
ACCCGTAGGGGACGGAGGTTCGATAAAAAAAAGGATAGAAGCGATCCAGA
AGGTGGTGGGGTGGTCAACGGTGGAGGATTACTACGCGTTTGACTAGGTA
GGGGAGGGAGGGAGGGAGAGGGGAGGGCGGGCGGGGGCGAGGGTGCCCTA
CGGCGTGAGAGAAACGGCTGTGGACGGTGGAGGGCACTAGTGGTGCTTCC
TAGAACATGCACATGACTAGGTCGCGGAGGAAGAGAGTGTACAGGAGAAA
AATGCTACTAGGCGTAAAGTCCGTACCATGAGGCACCGAGGGGTTTTCTT
CAAGAATTAACCAACCATAACGAACAGGGGGACAAAACATCATCCCCCCC
TCCTTCCGCGCAAAGACCTT
back to top

protein sequence of NO05G04660.1

>NO05G04660.1-protein ID=NO05G04660.1-protein|Name=NO05G04660.1|organism=Nannochloropsis oceanica|type=polypeptide|length=312bp
MCSLHSARARPPGLVLFPLLAIVPTLLLNPTHAWRLSNYLRQSSTAAVES
MSSVSLSARFASIPPSKLTPCPSSSSSSSSSSSSSSSSSSLFLSSLFSSR
PPFSSSVSYSTLNTASTTARQLLCTLFPILLLPLSSAQAFPGLEDCTSES
NPSFTIVTCARSGIDPVTSRPQKCLSAENCISSSSVQSASKYMSPWVYGG
AAADTPSAWLSLVRAVEAQEGVKLVEVDNGSKQYYLRAEVGSKVPPGGID
DIEFLMSPKDGLVFFRSASRQMAFLYPLTQPVGDGGSIKKRIEAIQKVVG
WSTVEDYYAFD*
back to top

mRNA from alignment at chr5:1212772..1213991-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G04660.1 ID=NO05G04660.1|Name=NO05G04660.1|organism=Nannochloropsis oceanica|type=mRNA|length=1220bp|location=Sequence derived from alignment at chr5:1212772..1213991- (Nannochloropsis oceanica)
ACAGGCTCAAAATGTGCAGCCTCCACAGTGCTCGCGCACGGCCTCCTGGC
TTGGTTCTCTTTCCCCTCCTAGCCATCGTCCCGACCCTCCTCTTGAACCC
TACCCATGCCTGGCGCCTATCAAATTACTTGCGGCAATCGTCGACAGCAG
CAGTAGAATCAATGTCAAGTGTTTCTCTATCTGCTCGCTTTGCGTCCATT
CCTCCTAGCAAGCTCACACCCTGCCCCTCTTCCTCCTCCTCCTCCTCCTC
CTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCCTCTTTCTCTCCTCTTTAT
TTTCTTCTCGCCCTCCTTTTTCCTCCTCAGTCTCCTATTCCACATTAAAT
ACTGCTTCTACAACTGCTCGTCAACTCCTCTGCACCCTTTTCCCCATACT
CCTCCTCCCCTTGTCTTCTGCCCAAGCCTTTCCGGGCCTCGAAGACTGCA
CCAGCGAGTCCAATCCTTCCTTCACCATCGTCACATGTGCCCGCTCCGGT
ATCGATCCAGTCACCTCACGCCCCCAAAAATGTCTATCGGCCGAAAACTG
TATCAGCAGCAGCAGTGTCCAATCTGCGAGCAAGTACATGTCTCCCTGGG
TGTACGGTGGTGCTGCTGCTGACACCCCGTCAGCATGGCTCTCCCTCGTT
CGTGCCGTCGAAGCCCAAGAGGGGGTGAAGCTCGTGGAGGTTGACAACGG
GAGCAAGCAATACTACCTGAGAGCAGAGGTGGGGAGTAAAGTGCCCCCGG
GCGGGATTGACGATATCGAATTCTTGATGTCGCCGAAGGATGGCTTGGTG
TTCTTTCGGTCAGCGTCGCGGCAGATGGCGTTTTTGTACCCGTTGACCCA
ACCCGTAGGGGACGGAGGTTCGATAAAAAAAAGGATAGAAGCGATCCAGA
AGGTGGTGGGGTGGTCAACGGTGGAGGATTACTACGCGTTTGACTAGGTA
GGGGAGGGAGGGAGGGAGAGGGGAGGGCGGGCGGGGGCGAGGGTGCCCTA
CGGCGTGAGAGAAACGGCTGTGGACGGTGGAGGGCACTAGTGGTGCTTCC
TAGAACATGCACATGACTAGGTCGCGGAGGAAGAGAGTGTACAGGAGAAA
AATGCTACTAGGCGTAAAGTCCGTACCATGAGGCACCGAGGGGTTTTCTT
CAAGAATTAACCAACCATAACGAACAGGGGGACAAAACATCATCCCCCCC
TCCTTCCGCGCAAAGACCTT
back to top

Coding sequence (CDS) from alignment at chr5:1212772..1213991-

>NO05G04660.1 ID=NO05G04660.1|Name=NO05G04660.1|organism=Nannochloropsis oceanica|type=CDS|length=936bp|location=Sequence derived from alignment at chr5:1212772..1213991- (Nannochloropsis oceanica)
ATGTGCAGCCTCCACAGTGCTCGCGCACGGCCTCCTGGCTTGGTTCTCTT
TCCCCTCCTAGCCATCGTCCCGACCCTCCTCTTGAACCCTACCCATGCCT
GGCGCCTATCAAATTACTTGCGGCAATCGTCGACAGCAGCAGTAGAATCA
ATGTCAAGTGTTTCTCTATCTGCTCGCTTTGCGTCCATTCCTCCTAGCAA
GCTCACACCCTGCCCCTCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCT
CCTCCTCCTCCTCCTCCTCCCTCTTTCTCTCCTCTTTATTTTCTTCTCGC
CCTCCTTTTTCCTCCTCAGTCTCCTATTCCACATTAAATACTGCTTCTAC
AACTGCTCGTCAACTCCTCTGCACCCTTTTCCCCATACTCCTCCTCCCCT
TGTCTTCTGCCCAAGCCTTTCCGGGCCTCGAAGACTGCACCAGCGAGTCC
AATCCTTCCTTCACCATCGTCACATGTGCCCGCTCCGGTATCGATCCAGT
CACCTCACGCCCCCAAAAATGTCTATCGGCCGAAAACTGTATCAGCAGCA
GCAGTGTCCAATCTGCGAGCAAGTACATGTCTCCCTGGGTGTACGGTGGT
GCTGCTGCTGACACCCCGTCAGCATGGCTCTCCCTCGTTCGTGCCGTCGA
AGCCCAAGAGGGGGTGAAGCTCGTGGAGGTTGACAACGGGAGCAAGCAAT
ACTACCTGAGAGCAGAGGTGGGGAGTAAAGTGCCCCCGGGCGGGATTGAC
GATATCGAATTCTTGATGTCGCCGAAGGATGGCTTGGTGTTCTTTCGGTC
AGCGTCGCGGCAGATGGCGTTTTTGTACCCGTTGACCCAACCCGTAGGGG
ACGGAGGTTCGATAAAAAAAAGGATAGAAGCGATCCAGAAGGTGGTGGGG
TGGTCAACGGTGGAGGATTACTACGCGTTTGACTAG
back to top
Synonyms
Publications