NO05G04650.1, NO05G04650.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G04650.1
Unique NameNO05G04650.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1062
Alignment locationchr5:1211612..1212673 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1211612..1212673 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G04650.1 vs.
Match: EWM27957.1 (50s ribosomal protein l3-2 [Nannochloropsis gaditana])

HSP 1 Score: 495.0 bits (1273), Expect = 2.000e-136
Identity = 253/353 (71.67%), Postives = 288/353 (81.59%), Query Frame = 0 
Query:    1 MRRLLVCNGGSTAATTRKTFLASSPFPSSSSSSYSSSSPYSPLLRRLPPPPSSQASSAASLSTATRLMDSMSFEPRVGKAPGTSSSSTNATPPPTRRTGAIALKVGMMGVYDQWGQRYPCTILALDSVQALQIKKDATDGYTAVQLGAGEKKSKNISQPERGHLDRWIDGDGTAPPKRKLWEFRVTPDALLLPGTPVLAQHFVPGQLVDVAGTSKGKGFQGVMKRWGFKGQGASHGVSVSHRSLGSTGQNTSPGRVFKGKKMPGRMGGKRVTVQNLWLYKIDTERNLLYIKGHIPGNKGAFVRVTDAVKGARFPAPPPIPTFVPEEGITYPKEITAQAPDVDPLTPPEGRDDE 354
            MRRLL C GGS A   R+T         S + + S +     L  +    P +QA+ +ASLSTATRLMD ++FEP+      + +    +TPPPTRR+GAIALKVGM+GVYDQWG+RY CT+L LD+VQ +Q+KK+ATDGYT+VQLGAGEKK KN S+PERGHLDRWIDG GTA PKRKLWEFRVTPDAL+ PGTPVLAQHFVPGQLVDV GTSKGKGFQGVMKRW FKGQGASHG S+SHRSLGSTGQNTSPGRVFKGKKMPGR+GG+RVTVQNLWLYKIDTERNLLY+KGH+PG KG +VRV+DA+KGA FP PPP+PTFVPE GI YP EITAQ P+ DPL PPEGRDDE
Sbjct:    1 MRRLL-CAGGSVAG--RRT---------SGAGNASLT-----LFGKPTSLPLTQATPSASLSTATRLMDRINFEPQKSGLD-SKARRDKSTPPPTRRSGAIALKVGMLGVYDQWGRRYACTVLQLDAVQVVQVKKEATDGYTSVQLGAGEKKLKNASRPERGHLDRWIDGHGTAAPKRKLWEFRVTPDALMAPGTPVLAQHFVPGQLVDVVGTSKGKGFQGVMKRWNFKGQGASHGASLSHRSLGSTGQNTSPGRVFKGKKMPGRLGGERVTVQNLWLYKIDTERNLLYVKGHVPGPKGTYVRVSDAIKGAHFPVPPPVPTFVPEAGIAYPGEITAQLPEADPLIPPEGRDDE 335
The following BLAST results are available for this feature:
BLAST of NO05G04650.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27957.12.000e-13671.6750s ribosomal protein l3-2 [Nannochloropsis gadita... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G04650NO05G04650Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G04650.1NO05G04650.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G04650.1.cds1NO05G04650.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G04650.1 ID=NO05G04650.1|Name=NO05G04650.1|organism=Nannochloropsis oceanica|type=mRNA|length=1062bp
ATGCGGCGTCTCCTGGTGTGCAATGGCGGCAGCACGGCCGCCACTACCAG
AAAAACCTTCCTTGCCTCCTCCCCTTTCCCCTCCTCCTCTTCCTCTTCCT
ACTCCTCCTCATCCCCCTACTCGCCCCTCCTCCGTCGGCTACCACCACCC
CCCTCCTCCCAAGCGTCGTCGGCCGCCTCCCTCTCCACCGCCACCCGCCT
CATGGACAGCATGAGCTTTGAACCCCGGGTGGGCAAGGCGCCAGGCACGT
CCAGCAGCAGCACTAATGCCACCCCTCCCCCCACCCGCCGCACGGGCGCC
ATCGCCTTGAAGGTCGGCATGATGGGTGTATACGACCAGTGGGGGCAACG
GTACCCATGTACAATCCTTGCGCTCGATTCAGTGCAAGCGTTGCAGATCA
AGAAGGACGCGACAGACGGGTATACTGCAGTCCAACTGGGTGCAGGCGAA
AAGAAATCAAAAAACATCTCTCAGCCCGAAAGAGGACACCTCGACCGGTG
GATTGATGGGGATGGGACTGCACCACCCAAGCGAAAATTGTGGGAGTTTA
GGGTGACGCCCGATGCACTGCTCTTACCAGGCACGCCCGTGCTGGCGCAG
CACTTTGTTCCGGGGCAACTGGTGGACGTGGCGGGCACGAGCAAGGGGAA
GGGATTTCAAGGTGTGATGAAACGATGGGGTTTTAAAGGCCAAGGTGCCT
CCCACGGCGTCTCTGTCTCGCACCGTTCTCTGGGGTCCACGGGACAAAAC
ACTTCCCCTGGGCGCGTGTTTAAGGGCAAGAAGATGCCGGGCCGGATGGG
GGGGAAACGAGTGACGGTCCAGAACCTCTGGCTGTACAAGATTGACACGG
AACGCAACCTCCTCTACATTAAAGGCCACATTCCCGGCAACAAGGGGGCT
TTCGTCCGTGTCACCGATGCCGTGAAGGGTGCGCGTTTCCCTGCCCCTCC
ACCTATTCCTACATTTGTCCCCGAGGAGGGAATCACCTATCCGAAGGAGA
TAACGGCCCAAGCGCCGGATGTGGACCCGCTGACGCCGCCGGAGGGGAGG
GACGACGAGTAG
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protein sequence of NO05G04650.1

>NO05G04650.1-protein ID=NO05G04650.1-protein|Name=NO05G04650.1|organism=Nannochloropsis oceanica|type=polypeptide|length=354bp
MRRLLVCNGGSTAATTRKTFLASSPFPSSSSSSYSSSSPYSPLLRRLPPP
PSSQASSAASLSTATRLMDSMSFEPRVGKAPGTSSSSTNATPPPTRRTGA
IALKVGMMGVYDQWGQRYPCTILALDSVQALQIKKDATDGYTAVQLGAGE
KKSKNISQPERGHLDRWIDGDGTAPPKRKLWEFRVTPDALLLPGTPVLAQ
HFVPGQLVDVAGTSKGKGFQGVMKRWGFKGQGASHGVSVSHRSLGSTGQN
TSPGRVFKGKKMPGRMGGKRVTVQNLWLYKIDTERNLLYIKGHIPGNKGA
FVRVTDAVKGARFPAPPPIPTFVPEEGITYPKEITAQAPDVDPLTPPEGR
DDE*
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mRNA from alignment at chr5:1211612..1212673+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G04650.1 ID=NO05G04650.1|Name=NO05G04650.1|organism=Nannochloropsis oceanica|type=mRNA|length=1062bp|location=Sequence derived from alignment at chr5:1211612..1212673+ (Nannochloropsis oceanica)
ATGCGGCGTCTCCTGGTGTGCAATGGCGGCAGCACGGCCGCCACTACCAG
AAAAACCTTCCTTGCCTCCTCCCCTTTCCCCTCCTCCTCTTCCTCTTCCT
ACTCCTCCTCATCCCCCTACTCGCCCCTCCTCCGTCGGCTACCACCACCC
CCCTCCTCCCAAGCGTCGTCGGCCGCCTCCCTCTCCACCGCCACCCGCCT
CATGGACAGCATGAGCTTTGAACCCCGGGTGGGCAAGGCGCCAGGCACGT
CCAGCAGCAGCACTAATGCCACCCCTCCCCCCACCCGCCGCACGGGCGCC
ATCGCCTTGAAGGTCGGCATGATGGGTGTATACGACCAGTGGGGGCAACG
GTACCCATGTACAATCCTTGCGCTCGATTCAGTGCAAGCGTTGCAGATCA
AGAAGGACGCGACAGACGGGTATACTGCAGTCCAACTGGGTGCAGGCGAA
AAGAAATCAAAAAACATCTCTCAGCCCGAAAGAGGACACCTCGACCGGTG
GATTGATGGGGATGGGACTGCACCACCCAAGCGAAAATTGTGGGAGTTTA
GGGTGACGCCCGATGCACTGCTCTTACCAGGCACGCCCGTGCTGGCGCAG
CACTTTGTTCCGGGGCAACTGGTGGACGTGGCGGGCACGAGCAAGGGGAA
GGGATTTCAAGGTGTGATGAAACGATGGGGTTTTAAAGGCCAAGGTGCCT
CCCACGGCGTCTCTGTCTCGCACCGTTCTCTGGGGTCCACGGGACAAAAC
ACTTCCCCTGGGCGCGTGTTTAAGGGCAAGAAGATGCCGGGCCGGATGGG
GGGGAAACGAGTGACGGTCCAGAACCTCTGGCTGTACAAGATTGACACGG
AACGCAACCTCCTCTACATTAAAGGCCACATTCCCGGCAACAAGGGGGCT
TTCGTCCGTGTCACCGATGCCGTGAAGGGTGCGCGTTTCCCTGCCCCTCC
ACCTATTCCTACATTTGTCCCCGAGGAGGGAATCACCTATCCGAAGGAGA
TAACGGCCCAAGCGCCGGATGTGGACCCGCTGACGCCGCCGGAGGGGAGG
GACGACGAGTAG
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Coding sequence (CDS) from alignment at chr5:1211612..1212673+

>NO05G04650.1 ID=NO05G04650.1|Name=NO05G04650.1|organism=Nannochloropsis oceanica|type=CDS|length=1062bp|location=Sequence derived from alignment at chr5:1211612..1212673+ (Nannochloropsis oceanica)
ATGCGGCGTCTCCTGGTGTGCAATGGCGGCAGCACGGCCGCCACTACCAG
AAAAACCTTCCTTGCCTCCTCCCCTTTCCCCTCCTCCTCTTCCTCTTCCT
ACTCCTCCTCATCCCCCTACTCGCCCCTCCTCCGTCGGCTACCACCACCC
CCCTCCTCCCAAGCGTCGTCGGCCGCCTCCCTCTCCACCGCCACCCGCCT
CATGGACAGCATGAGCTTTGAACCCCGGGTGGGCAAGGCGCCAGGCACGT
CCAGCAGCAGCACTAATGCCACCCCTCCCCCCACCCGCCGCACGGGCGCC
ATCGCCTTGAAGGTCGGCATGATGGGTGTATACGACCAGTGGGGGCAACG
GTACCCATGTACAATCCTTGCGCTCGATTCAGTGCAAGCGTTGCAGATCA
AGAAGGACGCGACAGACGGGTATACTGCAGTCCAACTGGGTGCAGGCGAA
AAGAAATCAAAAAACATCTCTCAGCCCGAAAGAGGACACCTCGACCGGTG
GATTGATGGGGATGGGACTGCACCACCCAAGCGAAAATTGTGGGAGTTTA
GGGTGACGCCCGATGCACTGCTCTTACCAGGCACGCCCGTGCTGGCGCAG
CACTTTGTTCCGGGGCAACTGGTGGACGTGGCGGGCACGAGCAAGGGGAA
GGGATTTCAAGGTGTGATGAAACGATGGGGTTTTAAAGGCCAAGGTGCCT
CCCACGGCGTCTCTGTCTCGCACCGTTCTCTGGGGTCCACGGGACAAAAC
ACTTCCCCTGGGCGCGTGTTTAAGGGCAAGAAGATGCCGGGCCGGATGGG
GGGGAAACGAGTGACGGTCCAGAACCTCTGGCTGTACAAGATTGACACGG
AACGCAACCTCCTCTACATTAAAGGCCACATTCCCGGCAACAAGGGGGCT
TTCGTCCGTGTCACCGATGCCGTGAAGGGTGCGCGTTTCCCTGCCCCTCC
ACCTATTCCTACATTTGTCCCCGAGGAGGGAATCACCTATCCGAAGGAGA
TAACGGCCCAAGCGCCGGATGTGGACCCGCTGACGCCGCCGGAGGGGAGG
GACGACGAGTAG
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Synonyms
Publications