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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr5 | genome | chr5:1209125..1212771 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO05G04640.1 vs.
Match: XP_005855721.1 (nad-dependent epimerase dehydratase family protein [Nannochloropsis gaditana CCMP526]; EKU20643.1 nad-dependent epimerase dehydratase family protein [Nannochloropsis gaditana CCMP526]; EWM27949.1 nad-dependent epimerase dehydratase family protein [Nannochloropsis gaditana]) HSP 1 Score: 592.4 bits (1526), Expect = 9.500e-166 Identity = 286/367 (77.93%), Postives = 324/367 (88.28%), Query Frame = 0
Query: 1 MASAAPTIKVVVTGGGGFLGRYLCQTLLRRKRLNGRALESIAILDDIFGDTHIPCDTKVQVFPNGPTNGASSNIRLESYRGDITDRKLVQEVLNPGPGSGGVVVFHLASIMSGQGETQFDKCLSVNLDGTRNILEEARALHAQGQAGGQPVRFVFPSSIAAFGPASEVNDETKRVPQSTYGTTKVMGELLINDFTRKGWIDGRTGRLPTVIVRPGNVNGAATGCFSAVVREVLMGHDYVIPIDPRQSHPVISARRTIKCLLALAEVESEKLGFDRSVNLPALQTTMDELLFHTRQIAQGRGIPIGEVVVKVDPLVSSIVGGMPQVMHSHRAKALGFPRDGSVEAVIEEYVDEFLDDEMKDDYPLFSV 368
M SA P++KV+VTGGGGFLGRYLCQ LLRRKRLNGRAL+SIAILD DTH+PCDTKVQVFP+GPTN ASS IR+E++RGDITDRKLV++ + PG G V +FHLAS+MSG+GE +FDKC++VNLDGT+N+LE+ARALHA G+ G +PVRFVFPSS AAFGP EV+DETK PQSTYG TK +GEL++ND+TRKGW+DGRTGRLPTVIVRPGN NGA+TGCFSAVVRE+LMGHDYVIP DPRQ+HPVIS RRTIK LLALAEVE E LG DRSVNLPALQTTM+ELLFHTRQIAQGRGIP+GEV VK+DP VS IVG PQVM S RA+ LG PRDGSVEAVIE+YVDEFLDDEMKDDYPLFS+
Sbjct: 1 MVSALPSVKVLVTGGGGFLGRYLCQVLLRRKRLNGRALDSIAILDT-GADTHVPCDTKVQVFPHGPTNQASSAIRVENFRGDITDRKLVEKAMQPGSEGGHVTIFHLASVMSGEGEEEFDKCVAVNLDGTQNLLEKARALHASGRVGEKPVRFVFPSSFAAFGPHPEVSDETKLTPQSTYGMTKAVGELMVNDYTRKGWVDGRTGRLPTVIVRPGNKNGASTGCFSAVVRELLMGHDYVIPYDPRQTHPVISTRRTIKGLLALAEVEGESLGGDRSVNLPALQTTMEELLFHTRQIAQGRGIPMGEVSVKIDPWVSGIVGRFPQVMRSPRAETLGLPRDGSVEAVIEDYVDEFLDDEMKDDYPLFSI 366
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO05G04640.1 ID=NO05G04640.1|Name=NO05G04640.1|organism=Nannochloropsis oceanica|type=mRNA|length=3505bp TCTTCTCGTATCGAAAGTGCTTTCTTCTTTTGTTCGTTCTTCTTCGCCGC CATTCTAAAACACCCTTCCTCCCTTCCTCCCCCCACCAACCCCGCCCTCT ACTCGTCGTCCCTCCCCTCCGGCGGCGTCAGCGGGTCCACATCCGGCGCT TGGGCCGTTATCTCCTTCGGATAGGTGATTCCCTCCTCGGGGACAAATGT AGGAATAGGTGGAGGGGCAGGGAAACGCGCACCCTTCACGGCATCGGTGA CACGGACGAAAGCCCCCTTGTTGCCGGGAATGTGGCCTTTAATGTAGAGG AGGTTGCGTTCCGTGTCAATCTTGTACAGCCAGAGGTTCTGGACCGTCAC TCGTTTCCCCCCCATCCGGCCCGGCATCTTCTTGCCCTTAAACACGCGCC CAGGGGAAGTGTTTTGTCCCGTGGACCCCAGAGAACGGTGCGAGACAGAG ACGCCGTGGGAGGCACCTTGGCCTTTAAAACCCCATCGTTTCATCACACC TTGAAATCCCTTCCCCTTGCTCGTGCCCGCCACGTCCACCAGTTGCCCCG GAACAAAGTGCTGCGCCAGCACGGGCGTGCCTGGTAAGAGCAGTGCATCG GGCGTCACCCTAAACTCCCACAATTTTCGCTTGGGTGGTGCAGTCCCATC CCCATCAATCCACCGGTCGAGGTGTCCTCTTTCGGGCTGAGAGATGTTTT TTGATTTCTTTTCGCCTGCACCCAGTTGGACTGCAGTATACCCGTCTGTC GCGTCCTTCTTGATCTGCAACGCTTGCACTGAATCGAGCGCAAGGATTGT ACATGGGTACCGTTGCCCCCACTGGTCGTATACACCCATCATGCCGACCT TCAAGGCGATGGCGCCCGTGCGGCGGGTGGGGGGAGGGGTGGCATTAGTG CTGCTGCTGGACGTGCCTGGCGCCTTGCCCACCCGGGGTTCAAAGCTCAT GCTGTCCATGAGGCGGGTGGCGGTGGAGAGGGAGGCGGCCGACGACGCTT GGGAGGAGGGGGGTGGTGGTAGCCGACGGAGGAGGGGCGAGTAGGGGGAT GAGGAGGAGTAGGAAGAGGAAGAGGAGGAGGGGAAAGGGGAGGAGGCAAG GAAGGTTTTTCTGGTAGTGGCGGCCGTGCTGCCGCCATTGCACACCAGGA GACGCCGCATACTTGACCACGGCTCCGCGCTGGCAACTATGTAAAGAGTA CAGGATGGATAAGTTACTCGAGGCAGAACGCGTAAAACAAGCAAAGGCCA GGTCTGAACGAGGGTCATGATGCAGCAGCCGTGAACAAGGGGGTGCCCGG ATGATTGATTGGAAACCCGTGGAAACCTCCCACGCTCGGACGACACCTAA CTCTTTCCAATACCACACCGGCACGCAGGGTTTAAAGAGCCAACACCAGC AGGATGACTACACCAGTCTCCTTCTTCCACATCTGCCTTTACCAGGGCAT CCTCCTGGCTTGGCTGTGCTATAGCCTCTGGAAGCTGCTGGCTGCTTGCC TGCTGCCTCCTAACTTTTTTGAAGCATGAAGATCAAGAACAACAGGGCAG AGACCTTTTCCCAGTAGCGACCCTCGCCACCAATTATGAAAGTACATACC CACGGCGCATGTACACACATAAAATTTTATCGCTTTACCTCTTGAACGAT CACGAGGCAGCGTTGCTGGTGCGCGCACCAAAGGCCTGCTGCTGTCTCAC AACATTGGTTCACGCGCTTTCCAGCTGCTTCAACTTCGGCATGCACACTC AGCCACTTCTCCCGACATCACTTACACGACACAGGTGCGCAGGAGGTGGT GGGCCAAGAAGCAGCAGTAGAGAGTATCATTAGCAGCACCGGCAGCGACA GCACATCAGCACTGCGCGAAGTCAAGCACAAGCAAGAAAGGATCCGCACC ATTCCTTCCTCAATTTTATGGCGTCTGCAGCACCCACCATCAAAGTGGTG GTCACAGGAGGCGGAGGCTTCTTGGGACGATATCTATGCCAGACACTGCT ACGACGGAAGCGATTGAACGGCCGAGCCCTGGAGAGTATTGCCATTCTTG ACGATATTTTTGGAGATACCCACATTCCCTGCGACACCAAAGTCCAGGTG TTCCCCAACGGGCCTACCAACGGTGCCTCCTCCAACATTCGCTTGGAGAG CTACCGAGGAGACATTACCGATCGGAAGCTCGTACAGGAGGTGTTGAACC CGGGACCAGGCTCTGGTGGGGTGGTGGTATTTCACCTGGCCTCGATCATG AGCGGACAGGGAGAGACGCAGTTTGACAAGTGCTTAAGCGTGAACCTCGA CGGCACCCGCAACATCCTCGAAGAAGCCCGAGCCCTCCACGCCCAGGGTC AAGCTGGGGGACAACCCGTGCGTTTTGTCTTCCCCTCTTCCATTGCTGCC TTCGGCCCCGCCAGTGAAGTAAACGACGAGACCAAGAGAGTGCCTCAGAG CACGTACGGGACAACGAAAGTAATGGGGGAGCTTTTGATTAATGATTTTA CTCGCAAGGGGTGGATCGATGGAAGGACGGGGAGGCTGCCTACAGTGATT GTGAGGCCGGGTAATGTGAATGGTGCAGCGACCGGGTGTTTCTCGGCCGT GGTCCGAGAGGTGCTGATGGGACATGACTATGTCATTCCTATCGACCCGC GCCAGTCACATCCAGTGATTTCTGCGAGACGGACGATAAAGTGTTTGTTG GCTTTGGCTGAGGTCGAAAGTGAGAAGTTGGGATTTGACCGAAGTGTTAA CTTGCCGGCGTTGCAGACAACGATGGATGAGCTCTTGTTTCACACTCGGC AGATTGCGCAGGGGAGGGGTATTCCAATAGGGGAGGTGGTTGTCAAGGTG GATCCATTGGTGAGCAGCATTGTCGGAGGCATGCCACAGGTCATGCATAG CCACCGGGCGAAGGCGCTAGGTTTTCCGAGAGATGGGAGTGTGGAGGCGG TGATTGAAGAATATGTGGACGAATTTTTGGATGATGAGATGAAGGATGAT TATCCACTTTTTTCTGTGTAGACCGGGATGGGTAGGGAGCGAAGAAGAGT GAGAGGGAGGATGACTGTAATAATTTGGAATCTTTGGAAGATAAGAGTGT TTCTGCTTTTGTTCCAAGGAGGAGGGATGAAGGACATGGGCGTATTGTGA AGAAATGGAGAAGAGAAAGGAAGGGGGGAACGCACGTGTCTTTGTACAGG CCAGCGGAGATTGCATGTTATCGAAACTTGCGGAAGACGAAAGAATAGGA AGTGCACCACCCGTAGTATTATTTTCAACGAATAAGAGTTTTAAACCGAT AATGATCAAGATAGAGAGATGTTTAGAGGAAGTCCAAGAGCGTCAGAGTG GGGGAGGAGAAAAATGGAGAGAAGTGGGTGCACCAAAAAGAGCCAGTAAC GACGAGTAACCATAAAGACCAGGAGAAATTACGGGAAAAAGAATAACGCA ACATACATAACAGTAAATCGGGACAGATGCGATCATTGCTTTTGGCCCTG TGGCG back to topprotein sequence of NO05G04640.1 >NO05G04640.1-protein ID=NO05G04640.1-protein|Name=NO05G04640.1|organism=Nannochloropsis oceanica|type=polypeptide|length=368bp MASAAPTIKVVVTGGGGFLGRYLCQTLLRRKRLNGRALESIAILDDIFGD THIPCDTKVQVFPNGPTNGASSNIRLESYRGDITDRKLVQEVLNPGPGSG GVVVFHLASIMSGQGETQFDKCLSVNLDGTRNILEEARALHAQGQAGGQP VRFVFPSSIAAFGPASEVNDETKRVPQSTYGTTKVMGELLINDFTRKGWI DGRTGRLPTVIVRPGNVNGAATGCFSAVVREVLMGHDYVIPIDPRQSHPV ISARRTIKCLLALAEVESEKLGFDRSVNLPALQTTMDELLFHTRQIAQGR GIPIGEVVVKVDPLVSSIVGGMPQVMHSHRAKALGFPRDGSVEAVIEEYV DEFLDDEMKDDYPLFSV* back to topmRNA from alignment at chr5:1209125..1212771- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO05G04640.1 ID=NO05G04640.1|Name=NO05G04640.1|organism=Nannochloropsis oceanica|type=mRNA|length=3647bp|location=Sequence derived from alignment at chr5:1209125..1212771- (Nannochloropsis oceanica) TCTTCTCGTATCGAAAGTGCTTTCTTCTTTTGTTCGTTCTTCTTCGCCGC
CATTCTAAAACACCCTTCCTCCCTTCCTCCCCCCACCAACCCCGCCCTCT
ACTCGTCGTCCCTCCCCTCCGGCGGCGTCAGCGGGTCCACATCCGGCGCT
TGGGCCGTTATCTCCTTCGGATAGGTGATTCCCTCCTCGGGGACAAATGT
AGGAATAGGTGGAGGGGCAGGGAAACGCGCACCCTTCACGGCATCGGTGA
CACGGACGAAAGCCCCCTTGTTGCCGGGAATGTGGCCTTTAATGTAGAGG
AGGTTGCGTTCCGTGTCAATCTTGTACAGCCAGAGGTTCTGGACCGTCAC
TCGTTTCCCCCCCATCCGGCCCGGCATCTTCTTGCCCTTAAACACGCGCC
CAGGGGAAGTGTTTTGTCCCGTGGACCCCAGAGAACGGTGCGAGACAGAG
ACGCCGTGGGAGGCACCTTGGCCTTTAAAACCCCATCGTTTCATCACACC
TTGAAATCCCTTCCCCTTGCTCGTGCCCGCCACGTCCACCAGTTGCCCCG
GAACAAAGTGCTGCGCCAGCACGGGCGTGCCTGGTAAGAGCAGTGCATCG
GGCGTCACCCTAAACTCCCACAATTTTCGCTTGGGTGGTGCAGTCCCATC
CCCATCAATCCACCGGTCGAGGTGTCCTCTTTCGGGCTGAGAGATGTTTT
TTGATTTCTTTTCGCCTGCACCCAGTTGGACTGCAGTATACCCGTCTGTC
GCGTCCTTCTTGATCTGCAACGCTTGCACTGAATCGAGCGCAAGGATTGT
ACATGGGTACCGTTGCCCCCACTGGTCGTATACACCCATCATGCCGACCT
TCAAGGCGATGGCGCCCGTGCGGCGGGTGGGGGGAGGGGTGGCATTAGTG
CTGCTGCTGGACGTGCCTGGCGCCTTGCCCACCCGGGGTTCAAAGCTCAT
GCTGTCCATGAGGCGGGTGGCGGTGGAGAGGGAGGCGGCCGACGACGCTT
GGGAGGAGGGGGGTGGTGGTAGCCGACGGAGGAGGGGCGAGTAGGGGGAT
GAGGAGGAGTAGGAAGAGGAAGAGGAGGAGGGGAAAGGGGAGGAGGCAAG
GAAGGTTTTTCTGGTAGTGGCGGCCGTGCTGCCGCCATTGCACACCAGGA
GACGCCGCATACTTGACCACGGCTCCGCGCTGGCAACTATGTAAAGAGTA
CAGGATGGATAAGTTACTCGAGGCAGAACGCGTAAAACAAGCAAAGGCCA
GGTCTGAACGAGGGTCATGATGCAGCAGCCGTGAACAAGGGGGTGCCCGG
ATGATTGATTGGAAACCCGTGGAAACCTCCCACGCTCGGACGACACCTAA
CTCTTTCCAATACCACACCGGCACGCAGGGTTTAAAGAGCCAACACCAGC
AGGATGACTACACCAGTCTCCTTCTTCCACATCTGCCTTTACCAGGGCAT
CCTCCTGGCTTGGCTGTGCTATAGCCTCTGGAAGCTGCTGGCTGCTTGCC
TGCTGCCTCCTAACTTTTTTGAAGCATGAAGATCAAGAACAACAGGGCAG
AGACCTTTTCCCAGTAGCGACCCTCGCCACCAATTATGAAAGTACATACC
CACGGCGCATGTACACACATAAAATTTTATCGCTTTACCTCTTGAACGAT
CACGAGGCAGCGTTGCTGGTGCGCGCACCAAAGGCCTGCTGCTGTCTCAC
AACATTGGTTCACGCGCTTTCCAGCTGCTTCAACTTCGGCATGCACACTC
AGCCACTTCTCCCGACATCACTTACACGACACAGGTGCGCAGGAGGTGGT
GGGCCAAGAAGCAGCAGTAGAGAGTATCATTAGCAGCACCGGCAGCGACA
GCACATCAGCACTGCGCGAAGTCAAGCACAAGCAAGAAAGGATCCGCACC
ATTCCTTCCTCAATTTTATGGCGTCTGCAGCACCCACCATCAAAGTGGTG
GTCACAGGAGGCGGAGGCTTCTTGGGACGATATCTATGCCAGACACTGCT
ACGACGGAAGCGATTGAACGGCCGAGCCCTGGAGAGTATTGCCATTCTTG
ACGATATTTTTGGAGATACCCACATTCCCTGCGACACCAAAGTCCAGGTG
TTCCCCAACGGGCCTACCAACGGTGCCTCCTCCAACATTCGCTTGGAGAG
CTACCGAGGAGACATTACCGATCGGAAGCTCGTACAGGAGGTGTTGAACC
CGGGACCAGGCTCTGGTGGGGTGGTGGTATTTCACCTGGCCTCGATCATG
AGCGGACAGGGAGAGACGCAGTTTGACAAGTGCTTAAGCGTGAACCTCGG
TACGTCCGCTTCCATACTTATTTTGGGGGATGATATGGTTTTAATGCATA
TTACCGTGCGGTCATGACGTAAACTCATCTTTCCTTCCTTCCTTCCTCCT
TCCTTTCCCCCTCCTCCCTTTCCTCCCGCCCTCGACACCAGACGGCACCC
GCAACATCCTCGAAGAAGCCCGAGCCCTCCACGCCCAGGGTCAAGCTGGG
GGACAACCCGTGCGTTTTGTCTTCCCCTCTTCCATTGCTGCCTTCGGCCC
CGCCAGTGAAGTAAACGACGAGACCAAGAGAGTGCCTCAGAGCACGTACG
GGACAACGAAAGTAATGGGGGAGCTTTTGATTAATGATTTTACTCGCAAG
GGGTGGATCGATGGAAGGACGGGGAGGCTGCCTACAGTGATTGTGAGGCC
GGGTAATGTGAATGGTGCAGCGACCGGGTGTTTCTCGGCCGTGGTCCGAG
AGGTGCTGATGGGACATGACTATGTCATTCCTATCGACCCGCGCCAGTCA
CATCCAGTGATTTCTGCGAGACGGACGATAAAGTGTTTGTTGGCTTTGGC
TGAGGTCGAAAGTGAGAAGTTGGGATTTGACCGAAGTGTTAACTTGCCGG
CGTTGCAGACAACGATGGATGAGCTCTTGTTTCACACTCGGCAGATTGCG
CAGGGGAGGGGTATTCCAATAGGGGAGGTGGTTGTCAAGGTGGATCCATT
GGTGAGCAGCATTGTCGGAGGCATGCCACAGGTCATGCATAGCCACCGGG
CGAAGGCGCTAGGTTTTCCGAGAGATGGGAGTGTGGAGGCGGTGATTGAA
GAATATGTGGACGAATTTTTGGATGATGAGATGAAGGATGATTATCCACT
TTTTTCTGTGTAGACCGGGATGGGTAGGGAGCGAAGAAGAGTGAGAGGGA
GGATGACTGTAATAATTTGGAATCTTTGGAAGATAAGAGTGTTTCTGCTT
TTGTTCCAAGGAGGAGGGATGAAGGACATGGGCGTATTGTGAAGAAATGG
AGAAGAGAAAGGAAGGGGGGAACGCACGTGTCTTTGTACAGGCCAGCGGA
GATTGCATGTTATCGAAACTTGCGGAAGACGAAAGAATAGGAAGTGCACC
ACCCGTAGTATTATTTTCAACGAATAAGAGTTTTAAACCGATAATGATCA
AGATAGAGAGATGTTTAGAGGAAGTCCAAGAGCGTCAGAGTGGGGGAGGA
GAAAAATGGAGAGAAGTGGGTGCACCAAAAAGAGCCAGTAACGACGAGTA
ACCATAAAGACCAGGAGAAATTACGGGAAAAAGAATAACGCAACATACAT
AACAGTAAATCGGGACAGATGCGATCATTGCTTTTGGCCCTGTGGCG back to topCoding sequence (CDS) from alignment at chr5:1209125..1212771- >NO05G04640.1 ID=NO05G04640.1|Name=NO05G04640.1|organism=Nannochloropsis oceanica|type=CDS|length=1104bp|location=Sequence derived from alignment at chr5:1209125..1212771- (Nannochloropsis oceanica) ATGGCGTCTGCAGCACCCACCATCAAAGTGGTGGTCACAGGAGGCGGAGG CTTCTTGGGACGATATCTATGCCAGACACTGCTACGACGGAAGCGATTGA ACGGCCGAGCCCTGGAGAGTATTGCCATTCTTGACGATATTTTTGGAGAT ACCCACATTCCCTGCGACACCAAAGTCCAGGTGTTCCCCAACGGGCCTAC CAACGGTGCCTCCTCCAACATTCGCTTGGAGAGCTACCGAGGAGACATTA CCGATCGGAAGCTCGTACAGGAGGTGTTGAACCCGGGACCAGGCTCTGGT GGGGTGGTGGTATTTCACCTGGCCTCGATCATGAGCGGACAGGGAGAGAC GCAGTTTGACAAGTGCTTAAGCGTGAACCTCGACGGCACCCGCAACATCC TCGAAGAAGCCCGAGCCCTCCACGCCCAGGGTCAAGCTGGGGGACAACCC GTGCGTTTTGTCTTCCCCTCTTCCATTGCTGCCTTCGGCCCCGCCAGTGA AGTAAACGACGAGACCAAGAGAGTGCCTCAGAGCACGTACGGGACAACGA AAGTAATGGGGGAGCTTTTGATTAATGATTTTACTCGCAAGGGGTGGATC GATGGAAGGACGGGGAGGCTGCCTACAGTGATTGTGAGGCCGGGTAATGT GAATGGTGCAGCGACCGGGTGTTTCTCGGCCGTGGTCCGAGAGGTGCTGA TGGGACATGACTATGTCATTCCTATCGACCCGCGCCAGTCACATCCAGTG ATTTCTGCGAGACGGACGATAAAGTGTTTGTTGGCTTTGGCTGAGGTCGA AAGTGAGAAGTTGGGATTTGACCGAAGTGTTAACTTGCCGGCGTTGCAGA CAACGATGGATGAGCTCTTGTTTCACACTCGGCAGATTGCGCAGGGGAGG GGTATTCCAATAGGGGAGGTGGTTGTCAAGGTGGATCCATTGGTGAGCAG CATTGTCGGAGGCATGCCACAGGTCATGCATAGCCACCGGGCGAAGGCGC TAGGTTTTCCGAGAGATGGGAGTGTGGAGGCGGTGATTGAAGAATATGTG GACGAATTTTTGGATGATGAGATGAAGGATGATTATCCACTTTTTTCTGT GTAG back to top
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