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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr5 | genome | chr5:1202384..1204202 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO05G04610.1 vs.
Match: EWM27995.1 (3-hydroxyisobutyrate dehydrogenase [Nannochloropsis gaditana]) HSP 1 Score: 458.8 bits (1179), Expect = 1.600e-125 Identity = 232/309 (75.08%), Postives = 268/309 (86.73%), Query Frame = 0
Query: 42 RHQSTSNSSSP---IKMGFIGLGQMGSRMASNLLSKTDLPVVIYDTNPKAMAILQGKGARLASSVEEIAQTTQIIMTMLPATQHVEAVVGQVLIPHAKAGTLLIDGSTIDPTASKAFAAQALTRGLEMVDAPVSGGIGGAEAGTLTFMVGGEAKSVEKAEAFILKHMGKKVVHCGGPGTGAVAKICNNLVLGVNMIGVAEAMRLGVALGMDPLILNGVLNSSSGRSWVTELYNPCPGVIPSAPSSNDYQGGFTSRLMQKDLGIAGDVANKVGGVPLPLGAVAQQVYALMQVAGWGGKDFSSVYKFLEGA 348
RH ST+ + + +GF+GLGQMGSRMASNLL KTDLPVVIYDTNPK+M+ L+ KGAR+A+S EE+A+ +IMTMLPATQHV+AV G ++IPHA+ GTLLIDGSTIDPTASKA AA+A T GL+MVDAPVSGG+GGAEAGTLTFMVGG+ + V+KAE +L+HMGKKVVHCG GTGA+AKICNNL+LG+NM+GVAEAMRLGVALGMDP ILNGV+N+SSGRSWVTE YNPCP V+PSAPSS+DYQGGF S+LMQKDLGIAGD A KV GVPLPLGA AQQ+Y LMQV G KDFSSVY+FLEGA
Sbjct: 31 RHCSTTTETMDKGGVTLGFLGLGQMGSRMASNLLDKTDLPVVIYDTNPKSMSSLEAKGARVAASGEEVARQAHVIMTMLPATQHVQAVFGDIIIPHARKGTLLIDGSTIDPTASKALAARAKTMGLDMVDAPVSGGVGGAEAGTLTFMVGGDVQCVKKAEVSMLRHMGKKVVHCGPVGTGAIAKICNNLILGINMVGVAEAMRLGVALGMDPHILNGVVNASSGRSWVTETYNPCPTVVPSAPSSHDYQGGFASKLMQKDLGIAGDAA-KVVGVPLPLGAAAQQLYTLMQVNDLGNKDFSSVYRFLEGA 338
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO05G04610.1 ID=NO05G04610.1|Name=NO05G04610.1|organism=Nannochloropsis oceanica|type=mRNA|length=1693bp AGTCTGTGTCTGTGTCTGTGTCTGGGAGCGTGGAAAATTGAGCATGTCAT GCCTTGAAAGAACAGGAAACGAAGAGGCAAGGGAAGCGAAGGCCCCAAAA AAATGCCGCCAGCGTCTGGGGCCTGGCAGAAATACCAAGCGACGTCCTCG AGAAGCCTCTAGGCTGTTGTGGACTGTCCTCAAATAGGATCGAGAGGGTG TCAAAGCCTTCTAGAGAGAAGGCAACGCACCGAACATCGCCAATCAGCGG AGAGAGCCTCTTTTCTTCAAGCCCAACTCTGACACCCATACCCACGCCCC ATACAGTACAGGAAATTCTGCGTGCACCACCAAAGGAAACGAGCAAGTAT ATACTCAAGTGAAAGCTTGATCATGAATTGCTGGCCTTGTCCCGCAAGGC GTCTCCTATATCGCGACATGACCTCCTCCTTTCTCTGCAGAACGCCGCCT TTTTTGAGGGACCGCACTCCCGATCCCCTTGTCATTACCACTAGCCGCCA TCAGAGCACCTCAAACTCTTCATCGCCGATTAAAATGGGTTTTATTGGTT TGGGACAAATGGGGTCGCGCATGGCGAGCAATTTGCTTTCCAAGACTGAC CTCCCAGTCGTCATCTATGACACCAACCCGAAGGCCATGGCTATTCTCCA AGGAAAAGGCGCCCGCCTTGCCAGCTCCGTCGAGGAAATCGCGCAGACAA CTCAAATTATCATGACTATGCTCCCGGCCACGCAGCACGTGGAAGCCGTG GTGGGACAGGTACTCATCCCACACGCCAAGGCAGGGACACTCCTAATTGA TGGTAGCACCATTGACCCCACGGCAAGCAAGGCCTTCGCCGCTCAAGCCC TTACTCGAGGCCTCGAAATGGTTGATGCCCCCGTGAGTGGTGGTATAGGG GGAGCAGAGGCCGGGACGCTGACTTTCATGGTGGGAGGAGAGGCGAAGAG CGTCGAGAAAGCCGAGGCGTTTATATTGAAGCACATGGGCAAGAAGGTCG TCCATTGCGGCGGGCCTGGCACGGGGGCCGTTGCCAAAATATGCAACAAC TTAGTGCTGGGAGTGAATATGATTGGCGTCGCGGAAGCTATGCGTCTGGG CGTGGCCTTGGGGATGGACCCCCTGATCTTAAACGGGGTCCTCAACTCCT CCAGCGGCCGCTCCTGGGTCACGGAACTTTACAACCCCTGCCCGGGCGTT ATTCCGTCCGCCCCTTCCTCAAATGACTACCAAGGGGGATTCACCTCTAG GTTAATGCAGAAAGATTTAGGAATTGCGGGGGATGTAGCAAACAAAGTGG GAGGGGTCCCCTTGCCCTTGGGAGCGGTGGCGCAGCAGGTATATGCGCTG ATGCAGGTCGCTGGGTGGGGCGGGAAGGACTTTTCAAGCGTGTATAAGTT TCTGGAGGGGGCTTCAATTGAAGGGAAAAGGAAGGGGTAGGTGGGAGTAG GGGAGAGAGGATATTAGTAGGTAGCAGAGTAATGGAAGAAGAACAAAGAG TGGCTCTCGCGAATAAAGAGAGGGAGGGAGTAGGAGAGCGGCAACGGTGG AGCTTCTGTGTAATAGTCAGACTACAGTTAAATACCAATCTGTGAGTGCA AAATGAACACATGTCAAGCCAGTAGGGCAGCAGCAGGGAAACAAATGTGG ACCCGTTCCTTTATGCCAGGGAATGACGATAGAAGAAAGCAGA back to topprotein sequence of NO05G04610.1 >NO05G04610.1-protein ID=NO05G04610.1-protein|Name=NO05G04610.1|organism=Nannochloropsis oceanica|type=polypeptide|length=356bp MNCWPCPARRLLYRDMTSSFLCRTPPFLRDRTPDPLVITTSRHQSTSNSS SPIKMGFIGLGQMGSRMASNLLSKTDLPVVIYDTNPKAMAILQGKGARLA SSVEEIAQTTQIIMTMLPATQHVEAVVGQVLIPHAKAGTLLIDGSTIDPT ASKAFAAQALTRGLEMVDAPVSGGIGGAEAGTLTFMVGGEAKSVEKAEAF ILKHMGKKVVHCGGPGTGAVAKICNNLVLGVNMIGVAEAMRLGVALGMDP LILNGVLNSSSGRSWVTELYNPCPGVIPSAPSSNDYQGGFTSRLMQKDLG IAGDVANKVGGVPLPLGAVAQQVYALMQVAGWGGKDFSSVYKFLEGASIE GKRKG* back to topmRNA from alignment at chr5:1202384..1204202- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO05G04610.1 ID=NO05G04610.1|Name=NO05G04610.1|organism=Nannochloropsis oceanica|type=mRNA|length=1819bp|location=Sequence derived from alignment at chr5:1202384..1204202- (Nannochloropsis oceanica) AGTCTGTGTCTGTGTCTGTGTCTGGGAGCGTGGAAAATTGAGCATGTCAT
GCCTTGAAAGAACAGGAAACGAAGAGGCAAGGGAAGCGAAGGCCCCAAAA
AAATGCCGCCAGCGTCTGGGGCCTGGCAGAAATACCAAGCGACGTCCTCG
AGAAGCCTCTAGGCTGTTGTGGACTGTCCTCAAATAGGATCGAGAGGGTG
TCAAAGCCTTCTAGAGAGAAGGCAACGCACCGAACATCGCCAATCAGCGG
AGAGAGCCTCTTTTCTTCAAGCCCAACTCTGACACCCATACCCACGCCCC
ATACAGTACAGGAAATTCTGCGTGCACCACCAAAGGAAACGAGCAAGTAT
ATACTCAAGTGAAAGCTTGATCATGAATTGCTGGCCTTGTCCCGCAAGGC
GTCTCCTATATCGCGACATGACCTCCTCCTTTCTCTGCAGAACGCCGCCT
TTTTTGAGGGACCGCACTCCCGATCCCCTTGTCATTACCACTAGCCGCCA
TCAGAGCACCTCAAACTCTTCATCGCCGATTAAAATGGGTTTTATTGGTT
TGGGACAAATGGGGTCGCGCATGGCGAGCAATTTGCTTTCCAAGACTGAC
CTCCCAGTCGTCATCTATGACACCAACCCGAAGGCCATGGCTATTCTCCA
AGGAAAAGGCGCCCGCCTTGCCAGCTCCGTCGAGGAAATCGCGCAGACAA
CTCAAATTATCATGACTATGCTCCCGGCCACGCAGCACGTGGAAGCCGTG
GTGGGACAGGTACTCATCCCACACGCCAAGGCAGGGACACTCCTAATTGA
TGGTAGCACCATTGACCCCACGGCAAGCAAGGCCTTCGCCGCTCAAGCCC
TTACTCGAGGCCTCGAAATGGTTGATGCCCCCGTGAGTGGTGGTATAGGG
GGAGCAGAGGCCGGGACGCTGACTTTCATGGTGGGAGGAGAGGCGAAGAG
CGTCGAGAAAGCCGAGGCGTTTATATTGAAGCACATGGGCAAGAAGGTCG
TCCATTGCGGCGGGCCTGGCACGGGGGCCGTTGCCAAAATATGCAACAAC
TTAGTGCTGGGAGTGAATATGATTGGCGTCGCGGAAGCTATGCGTCTGGG
CGTGGCCTTGGGGATGGACCCCCTGATCTTAAACGGGGTGCGTTACTCAA
TCCCTCTCCCTGAATTCCTCCTCCCCTCCCTGCCGTGTCCTCTGCCAGAC
CCATTACCCACCCATACATAAATTCACCCCGGCCAACTCTCCCTTGTTCC
CTCCCTCTCTCAGGTCCTCAACTCCTCCAGCGGCCGCTCCTGGGTCACGG
AACTTTACAACCCCTGCCCGGGCGTTATTCCGTCCGCCCCTTCCTCAAAT
GACTACCAAGGGGGATTCACCTCTAGGTTAATGCAGAAAGATTTAGGAAT
TGCGGGGGATGTAGCAAACAAAGTGGGAGGGGTCCCCTTGCCCTTGGGAG
CGGTGGCGCAGCAGGTATATGCGCTGATGCAGGTCGCTGGGTGGGGCGGG
AAGGACTTTTCAAGCGTGTATAAGTTTCTGGAGGGGGCTTCAATTGAAGG
GAAAAGGAAGGGGTAGGTGGGAGTAGGGGAGAGAGGATATTAGTAGGTAG
CAGAGTAATGGAAGAAGAACAAAGAGTGGCTCTCGCGAATAAAGAGAGGG
AGGGAGTAGGAGAGCGGCAACGGTGGAGCTTCTGTGTAATAGTCAGACTA
CAGTTAAATACCAATCTGTGAGTGCAAAATGAACACATGTCAAGCCAGTA
GGGCAGCAGCAGGGAAACAAATGTGGACCCGTTCCTTTATGCCAGGGAAT
GACGATAGAAGAAAGCAGA back to topCoding sequence (CDS) from alignment at chr5:1202384..1204202- >NO05G04610.1 ID=NO05G04610.1|Name=NO05G04610.1|organism=Nannochloropsis oceanica|type=CDS|length=1068bp|location=Sequence derived from alignment at chr5:1202384..1204202- (Nannochloropsis oceanica) ATGAATTGCTGGCCTTGTCCCGCAAGGCGTCTCCTATATCGCGACATGAC CTCCTCCTTTCTCTGCAGAACGCCGCCTTTTTTGAGGGACCGCACTCCCG ATCCCCTTGTCATTACCACTAGCCGCCATCAGAGCACCTCAAACTCTTCA TCGCCGATTAAAATGGGTTTTATTGGTTTGGGACAAATGGGGTCGCGCAT GGCGAGCAATTTGCTTTCCAAGACTGACCTCCCAGTCGTCATCTATGACA CCAACCCGAAGGCCATGGCTATTCTCCAAGGAAAAGGCGCCCGCCTTGCC AGCTCCGTCGAGGAAATCGCGCAGACAACTCAAATTATCATGACTATGCT CCCGGCCACGCAGCACGTGGAAGCCGTGGTGGGACAGGTACTCATCCCAC ACGCCAAGGCAGGGACACTCCTAATTGATGGTAGCACCATTGACCCCACG GCAAGCAAGGCCTTCGCCGCTCAAGCCCTTACTCGAGGCCTCGAAATGGT TGATGCCCCCGTGAGTGGTGGTATAGGGGGAGCAGAGGCCGGGACGCTGA CTTTCATGGTGGGAGGAGAGGCGAAGAGCGTCGAGAAAGCCGAGGCGTTT ATATTGAAGCACATGGGCAAGAAGGTCGTCCATTGCGGCGGGCCTGGCAC GGGGGCCGTTGCCAAAATATGCAACAACTTAGTGCTGGGAGTGAATATGA TTGGCGTCGCGGAAGCTATGCGTCTGGGCGTGGCCTTGGGGATGGACCCC CTGATCTTAAACGGGGTCCTCAACTCCTCCAGCGGCCGCTCCTGGGTCAC GGAACTTTACAACCCCTGCCCGGGCGTTATTCCGTCCGCCCCTTCCTCAA ATGACTACCAAGGGGGATTCACCTCTAGGTTAATGCAGAAAGATTTAGGA ATTGCGGGGGATGTAGCAAACAAAGTGGGAGGGGTCCCCTTGCCCTTGGG AGCGGTGGCGCAGCAGGTATATGCGCTGATGCAGGTCGCTGGGTGGGGCG GGAAGGACTTTTCAAGCGTGTATAAGTTTCTGGAGGGGGCTTCAATTGAA GGGAAAAGGAAGGGGTAG back to top
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