NO05G04610.1, NO05G04610.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G04610.1
Unique NameNO05G04610.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1693
Alignment locationchr5:1202384..1204202 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1202384..1204202 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO05G04610.1 vs.
Match: EWM27995.1 (3-hydroxyisobutyrate dehydrogenase [Nannochloropsis gaditana])

HSP 1 Score: 458.8 bits (1179), Expect = 1.600e-125
Identity = 232/309 (75.08%), Postives = 268/309 (86.73%), Query Frame = 0
Query:   42 RHQSTSNSSSP---IKMGFIGLGQMGSRMASNLLSKTDLPVVIYDTNPKAMAILQGKGARLASSVEEIAQTTQIIMTMLPATQHVEAVVGQVLIPHAKAGTLLIDGSTIDPTASKAFAAQALTRGLEMVDAPVSGGIGGAEAGTLTFMVGGEAKSVEKAEAFILKHMGKKVVHCGGPGTGAVAKICNNLVLGVNMIGVAEAMRLGVALGMDPLILNGVLNSSSGRSWVTELYNPCPGVIPSAPSSNDYQGGFTSRLMQKDLGIAGDVANKVGGVPLPLGAVAQQVYALMQVAGWGGKDFSSVYKFLEGA 348
            RH ST+  +     + +GF+GLGQMGSRMASNLL KTDLPVVIYDTNPK+M+ L+ KGAR+A+S EE+A+   +IMTMLPATQHV+AV G ++IPHA+ GTLLIDGSTIDPTASKA AA+A T GL+MVDAPVSGG+GGAEAGTLTFMVGG+ + V+KAE  +L+HMGKKVVHCG  GTGA+AKICNNL+LG+NM+GVAEAMRLGVALGMDP ILNGV+N+SSGRSWVTE YNPCP V+PSAPSS+DYQGGF S+LMQKDLGIAGD A KV GVPLPLGA AQQ+Y LMQV   G KDFSSVY+FLEGA
Sbjct:   31 RHCSTTTETMDKGGVTLGFLGLGQMGSRMASNLLDKTDLPVVIYDTNPKSMSSLEAKGARVAASGEEVARQAHVIMTMLPATQHVQAVFGDIIIPHARKGTLLIDGSTIDPTASKALAARAKTMGLDMVDAPVSGGVGGAEAGTLTFMVGGDVQCVKKAEVSMLRHMGKKVVHCGPVGTGAIAKICNNLILGINMVGVAEAMRLGVALGMDPHILNGVVNASSGRSWVTETYNPCPTVVPSAPSSHDYQGGFASKLMQKDLGIAGDAA-KVVGVPLPLGAAAQQLYTLMQVNDLGNKDFSSVYRFLEGA 338          
The following BLAST results are available for this feature:
BLAST of NO05G04610.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27995.11.600e-12575.083-hydroxyisobutyrate dehydrogenase [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G04610NO05G04610Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G04610.1NO05G04610.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G04610.1.cds1NO05G04610.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G04610.1.cds2NO05G04610.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G04610.1 ID=NO05G04610.1|Name=NO05G04610.1|organism=Nannochloropsis oceanica|type=mRNA|length=1693bp
AGTCTGTGTCTGTGTCTGTGTCTGGGAGCGTGGAAAATTGAGCATGTCAT
GCCTTGAAAGAACAGGAAACGAAGAGGCAAGGGAAGCGAAGGCCCCAAAA
AAATGCCGCCAGCGTCTGGGGCCTGGCAGAAATACCAAGCGACGTCCTCG
AGAAGCCTCTAGGCTGTTGTGGACTGTCCTCAAATAGGATCGAGAGGGTG
TCAAAGCCTTCTAGAGAGAAGGCAACGCACCGAACATCGCCAATCAGCGG
AGAGAGCCTCTTTTCTTCAAGCCCAACTCTGACACCCATACCCACGCCCC
ATACAGTACAGGAAATTCTGCGTGCACCACCAAAGGAAACGAGCAAGTAT
ATACTCAAGTGAAAGCTTGATCATGAATTGCTGGCCTTGTCCCGCAAGGC
GTCTCCTATATCGCGACATGACCTCCTCCTTTCTCTGCAGAACGCCGCCT
TTTTTGAGGGACCGCACTCCCGATCCCCTTGTCATTACCACTAGCCGCCA
TCAGAGCACCTCAAACTCTTCATCGCCGATTAAAATGGGTTTTATTGGTT
TGGGACAAATGGGGTCGCGCATGGCGAGCAATTTGCTTTCCAAGACTGAC
CTCCCAGTCGTCATCTATGACACCAACCCGAAGGCCATGGCTATTCTCCA
AGGAAAAGGCGCCCGCCTTGCCAGCTCCGTCGAGGAAATCGCGCAGACAA
CTCAAATTATCATGACTATGCTCCCGGCCACGCAGCACGTGGAAGCCGTG
GTGGGACAGGTACTCATCCCACACGCCAAGGCAGGGACACTCCTAATTGA
TGGTAGCACCATTGACCCCACGGCAAGCAAGGCCTTCGCCGCTCAAGCCC
TTACTCGAGGCCTCGAAATGGTTGATGCCCCCGTGAGTGGTGGTATAGGG
GGAGCAGAGGCCGGGACGCTGACTTTCATGGTGGGAGGAGAGGCGAAGAG
CGTCGAGAAAGCCGAGGCGTTTATATTGAAGCACATGGGCAAGAAGGTCG
TCCATTGCGGCGGGCCTGGCACGGGGGCCGTTGCCAAAATATGCAACAAC
TTAGTGCTGGGAGTGAATATGATTGGCGTCGCGGAAGCTATGCGTCTGGG
CGTGGCCTTGGGGATGGACCCCCTGATCTTAAACGGGGTCCTCAACTCCT
CCAGCGGCCGCTCCTGGGTCACGGAACTTTACAACCCCTGCCCGGGCGTT
ATTCCGTCCGCCCCTTCCTCAAATGACTACCAAGGGGGATTCACCTCTAG
GTTAATGCAGAAAGATTTAGGAATTGCGGGGGATGTAGCAAACAAAGTGG
GAGGGGTCCCCTTGCCCTTGGGAGCGGTGGCGCAGCAGGTATATGCGCTG
ATGCAGGTCGCTGGGTGGGGCGGGAAGGACTTTTCAAGCGTGTATAAGTT
TCTGGAGGGGGCTTCAATTGAAGGGAAAAGGAAGGGGTAGGTGGGAGTAG
GGGAGAGAGGATATTAGTAGGTAGCAGAGTAATGGAAGAAGAACAAAGAG
TGGCTCTCGCGAATAAAGAGAGGGAGGGAGTAGGAGAGCGGCAACGGTGG
AGCTTCTGTGTAATAGTCAGACTACAGTTAAATACCAATCTGTGAGTGCA
AAATGAACACATGTCAAGCCAGTAGGGCAGCAGCAGGGAAACAAATGTGG
ACCCGTTCCTTTATGCCAGGGAATGACGATAGAAGAAAGCAGA
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protein sequence of NO05G04610.1

>NO05G04610.1-protein ID=NO05G04610.1-protein|Name=NO05G04610.1|organism=Nannochloropsis oceanica|type=polypeptide|length=356bp
MNCWPCPARRLLYRDMTSSFLCRTPPFLRDRTPDPLVITTSRHQSTSNSS
SPIKMGFIGLGQMGSRMASNLLSKTDLPVVIYDTNPKAMAILQGKGARLA
SSVEEIAQTTQIIMTMLPATQHVEAVVGQVLIPHAKAGTLLIDGSTIDPT
ASKAFAAQALTRGLEMVDAPVSGGIGGAEAGTLTFMVGGEAKSVEKAEAF
ILKHMGKKVVHCGGPGTGAVAKICNNLVLGVNMIGVAEAMRLGVALGMDP
LILNGVLNSSSGRSWVTELYNPCPGVIPSAPSSNDYQGGFTSRLMQKDLG
IAGDVANKVGGVPLPLGAVAQQVYALMQVAGWGGKDFSSVYKFLEGASIE
GKRKG*
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mRNA from alignment at chr5:1202384..1204202-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G04610.1 ID=NO05G04610.1|Name=NO05G04610.1|organism=Nannochloropsis oceanica|type=mRNA|length=1819bp|location=Sequence derived from alignment at chr5:1202384..1204202- (Nannochloropsis oceanica)
AGTCTGTGTCTGTGTCTGTGTCTGGGAGCGTGGAAAATTGAGCATGTCAT GCCTTGAAAGAACAGGAAACGAAGAGGCAAGGGAAGCGAAGGCCCCAAAA AAATGCCGCCAGCGTCTGGGGCCTGGCAGAAATACCAAGCGACGTCCTCG AGAAGCCTCTAGGCTGTTGTGGACTGTCCTCAAATAGGATCGAGAGGGTG TCAAAGCCTTCTAGAGAGAAGGCAACGCACCGAACATCGCCAATCAGCGG AGAGAGCCTCTTTTCTTCAAGCCCAACTCTGACACCCATACCCACGCCCC ATACAGTACAGGAAATTCTGCGTGCACCACCAAAGGAAACGAGCAAGTAT ATACTCAAGTGAAAGCTTGATCATGAATTGCTGGCCTTGTCCCGCAAGGC GTCTCCTATATCGCGACATGACCTCCTCCTTTCTCTGCAGAACGCCGCCT TTTTTGAGGGACCGCACTCCCGATCCCCTTGTCATTACCACTAGCCGCCA TCAGAGCACCTCAAACTCTTCATCGCCGATTAAAATGGGTTTTATTGGTT TGGGACAAATGGGGTCGCGCATGGCGAGCAATTTGCTTTCCAAGACTGAC CTCCCAGTCGTCATCTATGACACCAACCCGAAGGCCATGGCTATTCTCCA AGGAAAAGGCGCCCGCCTTGCCAGCTCCGTCGAGGAAATCGCGCAGACAA CTCAAATTATCATGACTATGCTCCCGGCCACGCAGCACGTGGAAGCCGTG GTGGGACAGGTACTCATCCCACACGCCAAGGCAGGGACACTCCTAATTGA TGGTAGCACCATTGACCCCACGGCAAGCAAGGCCTTCGCCGCTCAAGCCC TTACTCGAGGCCTCGAAATGGTTGATGCCCCCGTGAGTGGTGGTATAGGG GGAGCAGAGGCCGGGACGCTGACTTTCATGGTGGGAGGAGAGGCGAAGAG CGTCGAGAAAGCCGAGGCGTTTATATTGAAGCACATGGGCAAGAAGGTCG TCCATTGCGGCGGGCCTGGCACGGGGGCCGTTGCCAAAATATGCAACAAC TTAGTGCTGGGAGTGAATATGATTGGCGTCGCGGAAGCTATGCGTCTGGG CGTGGCCTTGGGGATGGACCCCCTGATCTTAAACGGGGTGCGTTACTCAA TCCCTCTCCCTGAATTCCTCCTCCCCTCCCTGCCGTGTCCTCTGCCAGAC CCATTACCCACCCATACATAAATTCACCCCGGCCAACTCTCCCTTGTTCC CTCCCTCTCTCAGGTCCTCAACTCCTCCAGCGGCCGCTCCTGGGTCACGG AACTTTACAACCCCTGCCCGGGCGTTATTCCGTCCGCCCCTTCCTCAAAT GACTACCAAGGGGGATTCACCTCTAGGTTAATGCAGAAAGATTTAGGAAT TGCGGGGGATGTAGCAAACAAAGTGGGAGGGGTCCCCTTGCCCTTGGGAG CGGTGGCGCAGCAGGTATATGCGCTGATGCAGGTCGCTGGGTGGGGCGGG AAGGACTTTTCAAGCGTGTATAAGTTTCTGGAGGGGGCTTCAATTGAAGG GAAAAGGAAGGGGTAGGTGGGAGTAGGGGAGAGAGGATATTAGTAGGTAG CAGAGTAATGGAAGAAGAACAAAGAGTGGCTCTCGCGAATAAAGAGAGGG AGGGAGTAGGAGAGCGGCAACGGTGGAGCTTCTGTGTAATAGTCAGACTA CAGTTAAATACCAATCTGTGAGTGCAAAATGAACACATGTCAAGCCAGTA GGGCAGCAGCAGGGAAACAAATGTGGACCCGTTCCTTTATGCCAGGGAAT GACGATAGAAGAAAGCAGA
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Coding sequence (CDS) from alignment at chr5:1202384..1204202-

>NO05G04610.1 ID=NO05G04610.1|Name=NO05G04610.1|organism=Nannochloropsis oceanica|type=CDS|length=1068bp|location=Sequence derived from alignment at chr5:1202384..1204202- (Nannochloropsis oceanica)
ATGAATTGCTGGCCTTGTCCCGCAAGGCGTCTCCTATATCGCGACATGAC
CTCCTCCTTTCTCTGCAGAACGCCGCCTTTTTTGAGGGACCGCACTCCCG
ATCCCCTTGTCATTACCACTAGCCGCCATCAGAGCACCTCAAACTCTTCA
TCGCCGATTAAAATGGGTTTTATTGGTTTGGGACAAATGGGGTCGCGCAT
GGCGAGCAATTTGCTTTCCAAGACTGACCTCCCAGTCGTCATCTATGACA
CCAACCCGAAGGCCATGGCTATTCTCCAAGGAAAAGGCGCCCGCCTTGCC
AGCTCCGTCGAGGAAATCGCGCAGACAACTCAAATTATCATGACTATGCT
CCCGGCCACGCAGCACGTGGAAGCCGTGGTGGGACAGGTACTCATCCCAC
ACGCCAAGGCAGGGACACTCCTAATTGATGGTAGCACCATTGACCCCACG
GCAAGCAAGGCCTTCGCCGCTCAAGCCCTTACTCGAGGCCTCGAAATGGT
TGATGCCCCCGTGAGTGGTGGTATAGGGGGAGCAGAGGCCGGGACGCTGA
CTTTCATGGTGGGAGGAGAGGCGAAGAGCGTCGAGAAAGCCGAGGCGTTT
ATATTGAAGCACATGGGCAAGAAGGTCGTCCATTGCGGCGGGCCTGGCAC
GGGGGCCGTTGCCAAAATATGCAACAACTTAGTGCTGGGAGTGAATATGA
TTGGCGTCGCGGAAGCTATGCGTCTGGGCGTGGCCTTGGGGATGGACCCC
CTGATCTTAAACGGGGTCCTCAACTCCTCCAGCGGCCGCTCCTGGGTCAC
GGAACTTTACAACCCCTGCCCGGGCGTTATTCCGTCCGCCCCTTCCTCAA
ATGACTACCAAGGGGGATTCACCTCTAGGTTAATGCAGAAAGATTTAGGA
ATTGCGGGGGATGTAGCAAACAAAGTGGGAGGGGTCCCCTTGCCCTTGGG
AGCGGTGGCGCAGCAGGTATATGCGCTGATGCAGGTCGCTGGGTGGGGCG
GGAAGGACTTTTCAAGCGTGTATAAGTTTCTGGAGGGGGCTTCAATTGAA
GGGAAAAGGAAGGGGTAG
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Synonyms
Publications