NO05G04560.1, NO05G04560.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G04560.1
Unique NameNO05G04560.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1330
Alignment locationchr5:1182468..1183797 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1182468..1183797 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO05G04560.1 vs.
Match: XP_005855714.1 (hypothetical protein NGA_0605800 [Nannochloropsis gaditana CCMP526]; EKU20636.1 hypothetical protein NGA_0605800 [Nannochloropsis gaditana CCMP526]; EWM27966.1 hypothetical protein Naga_100008g113 [Nannochloropsis gaditana])

HSP 1 Score: 227.6 bits (579), Expect = 4.400e-56
Identity = 140/236 (59.32%), Postives = 173/236 (73.31%), Query Frame = 0
Query:   40 DCRGQVFNEAAASVKHDRVD-DDDENTHDAPPPPPTPLHTDMRAQRCKGNILESLSEISLENEDAEEGGA------WPQRPGGSMPSAARTMIELKAIEKVRNQINALNAVPSRGGASPAASYRSGGGAAASGGKLSFALPSALDQATASFGGETETLASFDRMHS-GGGKGRGQGGIGS--GGKGSGRKAVLSTKARQRKVVGTEREEAYNDRLTGRVVKHNKRKERMERLRRIY 266
            +CRG V NEAAASVK +  D DDD +  DAPPPPPTPLHTD R QR KG+ILESL EISL+NE+ + GG+       PQ    + PSAARTM+ELK I ++R  +N L+ VPSRGG +       GG     GG+L+ A+ SAL+QATASFG ET +LA+F+RM    GGKG G+GG+      +GSGRKAVLS+KARQR++ G+E+EEAYND+L GR+VKHNKRKERMERLRR+Y
Sbjct:    5 ECRGMVLNEAAASVKSNGSDLDDDVSDRDAPPPPPTPLHTDPRGQRNKGDILESLLEISLDNEEGDIGGSRSTTSDLPQVK--NEPSAARTMLELKDIARMRQHVNVLDPVPSRGGFAAMKRGALGGRGIERGGQLTSAVSSALEQATASFGEETGSLAAFERMQRIKGGKGGGKGGVHGIMDSRGSGRKAVLSSKARQRRIAGSEKEEAYNDKLNGRMVKHNKRKERMERLRRMY 238          
The following BLAST results are available for this feature:
BLAST of NO05G04560.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855714.14.400e-5659.32hypothetical protein NGA_0605800 [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G04560NO05G04560Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G04560.1NO05G04560.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G04560.1.cds1NO05G04560.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G04560.1 ID=NO05G04560.1|Name=NO05G04560.1|organism=Nannochloropsis oceanica|type=mRNA|length=1330bp
GGAACTCATCAGGCTGACAGCAGGCTTGGCATCTTCGGGTGCGGGTCCGA
TCTGGGGCCGAGATTTCGCATGCCAAATCTCATTGACCACCGGCGCAACC
ACGCTGGCAATGGGACGTGGGTGAGCACATCATTGTAATAGACATGTGAA
CTCTCCTTCGCCGTGGCCCTTTTCCAAATCTCTTTGTCTACAATCGGGAG
GGTGGGCGAGGTCGATCGACCTCCTTGCCCTCCTCTGATACCCTCCTCCG
GGAAAGACAAACCTAATGCGATTTCCACATCATCATAACCGCCGTAGGCG
TCCGTCTTCTTGCCTAACACGTCGGATCCTTTCTATTTGCCTCTATCTAG
CTCTTCACTGTCTCCGCAACATGTCTGGGGCGGATTGCCGGGGTCAGGTC
TTCAATGAAGCAGCGGCCTCCGTCAAGCACGACCGTGTAGATGACGACGA
CGAAAACACACACGACGCCCCCCCGCCGCCTCCGACGCCATTGCATACCG
ATATGCGTGCTCAGCGATGTAAAGGCAACATCCTGGAGTCGTTATCGGAA
ATCAGTCTGGAGAATGAGGATGCGGAAGAAGGCGGGGCCTGGCCGCAGCG
CCCGGGAGGGAGCATGCCTTCGGCGGCCAGAACAATGATCGAGCTTAAGG
CCATCGAGAAAGTGCGGAACCAGATAAATGCTTTGAACGCCGTGCCGTCT
CGAGGCGGGGCGAGTCCTGCGGCTAGCTACAGAAGTGGTGGAGGAGCAGC
AGCATCAGGAGGAAAGCTATCGTTTGCCTTGCCCTCGGCCTTGGACCAGG
CCACAGCTTCCTTTGGGGGGGAGACCGAGACGCTGGCGAGCTTTGATAGA
ATGCACAGCGGCGGCGGTAAAGGTCGGGGCCAAGGAGGGATTGGGAGCGG
CGGAAAGGGTTCAGGACGCAAGGCTGTGTTATCAACGAAAGCTAGGCAGC
GGAAGGTGGTAGGTACCGAGAGGGAGGAGGCGTACAACGACAGGCTGACA
GGTCGGGTGGTGAAGCACAATAAGCGTAAGGAGCGCATGGAGCGACTCCG
CCGTATTTATTGAACAATATGATTGATTGGTCCGAGATCGGGAAGGAGGG
AGCTGTAAAAATAATTGAAGGAGAGGAGGGAAGGAGAGAAATTAAGAAGC
TGAGAAGGGAAAGCTCACATGTAATCACGATGTCCGCAGCCAGCCAGCAA
AAACGTTAAACGAGAGCTAATGATATCAAAATACCGGAAGCTTTGCTTCC
AGTAACTGTTCTGCATTGGAAAACATCACACCACACCCAACAGAAGGAAG
GAAAGAAACAATCATGCAGTCAATGTACTT
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protein sequence of NO05G04560.1

>NO05G04560.1-protein ID=NO05G04560.1-protein|Name=NO05G04560.1|organism=Nannochloropsis oceanica|type=polypeptide|length=266bp
MRFPHHHNRRRRPSSCLTRRILSICLYLALHCLRNMSGADCRGQVFNEAA
ASVKHDRVDDDDENTHDAPPPPPTPLHTDMRAQRCKGNILESLSEISLEN
EDAEEGGAWPQRPGGSMPSAARTMIELKAIEKVRNQINALNAVPSRGGAS
PAASYRSGGGAAASGGKLSFALPSALDQATASFGGETETLASFDRMHSGG
GKGRGQGGIGSGGKGSGRKAVLSTKARQRKVVGTEREEAYNDRLTGRVVK
HNKRKERMERLRRIY*
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mRNA from alignment at chr5:1182468..1183797+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G04560.1 ID=NO05G04560.1|Name=NO05G04560.1|organism=Nannochloropsis oceanica|type=mRNA|length=1330bp|location=Sequence derived from alignment at chr5:1182468..1183797+ (Nannochloropsis oceanica)
GGAACTCATCAGGCTGACAGCAGGCTTGGCATCTTCGGGTGCGGGTCCGA TCTGGGGCCGAGATTTCGCATGCCAAATCTCATTGACCACCGGCGCAACC ACGCTGGCAATGGGACGTGGGTGAGCACATCATTGTAATAGACATGTGAA CTCTCCTTCGCCGTGGCCCTTTTCCAAATCTCTTTGTCTACAATCGGGAG GGTGGGCGAGGTCGATCGACCTCCTTGCCCTCCTCTGATACCCTCCTCCG GGAAAGACAAACCTAATGCGATTTCCACATCATCATAACCGCCGTAGGCG TCCGTCTTCTTGCCTAACACGTCGGATCCTTTCTATTTGCCTCTATCTAG CTCTTCACTGTCTCCGCAACATGTCTGGGGCGGATTGCCGGGGTCAGGTC TTCAATGAAGCAGCGGCCTCCGTCAAGCACGACCGTGTAGATGACGACGA CGAAAACACACACGACGCCCCCCCGCCGCCTCCGACGCCATTGCATACCG ATATGCGTGCTCAGCGATGTAAAGGCAACATCCTGGAGTCGTTATCGGAA ATCAGTCTGGAGAATGAGGATGCGGAAGAAGGCGGGGCCTGGCCGCAGCG CCCGGGAGGGAGCATGCCTTCGGCGGCCAGAACAATGATCGAGCTTAAGG CCATCGAGAAAGTGCGGAACCAGATAAATGCTTTGAACGCCGTGCCGTCT CGAGGCGGGGCGAGTCCTGCGGCTAGCTACAGAAGTGGTGGAGGAGCAGC AGCATCAGGAGGAAAGCTATCGTTTGCCTTGCCCTCGGCCTTGGACCAGG CCACAGCTTCCTTTGGGGGGGAGACCGAGACGCTGGCGAGCTTTGATAGA ATGCACAGCGGCGGCGGTAAAGGTCGGGGCCAAGGAGGGATTGGGAGCGG CGGAAAGGGTTCAGGACGCAAGGCTGTGTTATCAACGAAAGCTAGGCAGC GGAAGGTGGTAGGTACCGAGAGGGAGGAGGCGTACAACGACAGGCTGACA GGTCGGGTGGTGAAGCACAATAAGCGTAAGGAGCGCATGGAGCGACTCCG CCGTATTTATTGAACAATATGATTGATTGGTCCGAGATCGGGAAGGAGGG AGCTGTAAAAATAATTGAAGGAGAGGAGGGAAGGAGAGAAATTAAGAAGC TGAGAAGGGAAAGCTCACATGTAATCACGATGTCCGCAGCCAGCCAGCAA AAACGTTAAACGAGAGCTAATGATATCAAAATACCGGAAGCTTTGCTTCC AGTAACTGTTCTGCATTGGAAAACATCACACCACACCCAACAGAAGGAAG GAAAGAAACAATCATGCAGTCAATGTACTT
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Coding sequence (CDS) from alignment at chr5:1182468..1183797+

>NO05G04560.1 ID=NO05G04560.1|Name=NO05G04560.1|organism=Nannochloropsis oceanica|type=CDS|length=798bp|location=Sequence derived from alignment at chr5:1182468..1183797+ (Nannochloropsis oceanica)
ATGCGATTTCCACATCATCATAACCGCCGTAGGCGTCCGTCTTCTTGCCT
AACACGTCGGATCCTTTCTATTTGCCTCTATCTAGCTCTTCACTGTCTCC
GCAACATGTCTGGGGCGGATTGCCGGGGTCAGGTCTTCAATGAAGCAGCG
GCCTCCGTCAAGCACGACCGTGTAGATGACGACGACGAAAACACACACGA
CGCCCCCCCGCCGCCTCCGACGCCATTGCATACCGATATGCGTGCTCAGC
GATGTAAAGGCAACATCCTGGAGTCGTTATCGGAAATCAGTCTGGAGAAT
GAGGATGCGGAAGAAGGCGGGGCCTGGCCGCAGCGCCCGGGAGGGAGCAT
GCCTTCGGCGGCCAGAACAATGATCGAGCTTAAGGCCATCGAGAAAGTGC
GGAACCAGATAAATGCTTTGAACGCCGTGCCGTCTCGAGGCGGGGCGAGT
CCTGCGGCTAGCTACAGAAGTGGTGGAGGAGCAGCAGCATCAGGAGGAAA
GCTATCGTTTGCCTTGCCCTCGGCCTTGGACCAGGCCACAGCTTCCTTTG
GGGGGGAGACCGAGACGCTGGCGAGCTTTGATAGAATGCACAGCGGCGGC
GGTAAAGGTCGGGGCCAAGGAGGGATTGGGAGCGGCGGAAAGGGTTCAGG
ACGCAAGGCTGTGTTATCAACGAAAGCTAGGCAGCGGAAGGTGGTAGGTA
CCGAGAGGGAGGAGGCGTACAACGACAGGCTGACAGGTCGGGTGGTGAAG
CACAATAAGCGTAAGGAGCGCATGGAGCGACTCCGCCGTATTTATTGA
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Synonyms
Publications