NO05G04560.1, NO05G04560.1 (mRNA) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of NO05G04560.1 vs.
Match: XP_005855714.1 (hypothetical protein NGA_0605800 [Nannochloropsis gaditana CCMP526]; EKU20636.1 hypothetical protein NGA_0605800 [Nannochloropsis gaditana CCMP526]; EWM27966.1 hypothetical protein Naga_100008g113 [Nannochloropsis gaditana]) HSP 1 Score: 227.6 bits (579), Expect = 4.400e-56 Identity = 140/236 (59.32%), Postives = 173/236 (73.31%), Query Frame = 0 Query: 40 DCRGQVFNEAAASVKHDRVD-DDDENTHDAPPPPPTPLHTDMRAQRCKGNILESLSEISLENEDAEEGGA------WPQRPGGSMPSAARTMIELKAIEKVRNQINALNAVPSRGGASPAASYRSGGGAAASGGKLSFALPSALDQATASFGGETETLASFDRMHS-GGGKGRGQGGIGS--GGKGSGRKAVLSTKARQRKVVGTEREEAYNDRLTGRVVKHNKRKERMERLRRIY 266 +CRG V NEAAASVK + D DDD + DAPPPPPTPLHTD R QR KG+ILESL EISL+NE+ + GG+ PQ + PSAARTM+ELK I ++R +N L+ VPSRGG + GG GG+L+ A+ SAL+QATASFG ET +LA+F+RM GGKG G+GG+ +GSGRKAVLS+KARQR++ G+E+EEAYND+L GR+VKHNKRKERMERLRR+Y Sbjct: 5 ECRGMVLNEAAASVKSNGSDLDDDVSDRDAPPPPPTPLHTDPRGQRNKGDILESLLEISLDNEEGDIGGSRSTTSDLPQVK--NEPSAARTMLELKDIARMRQHVNVLDPVPSRGGFAAMKRGALGGRGIERGGQLTSAVSSALEQATASFGEETGSLAAFERMQRIKGGKGGGKGGVHGIMDSRGSGRKAVLSSKARQRRIAGSEKEEAYNDKLNGRMVKHNKRKERMERLRRMY 238 The following BLAST results are available for this feature:
BLAST of NO05G04560.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1) Total hits: 1
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO05G04560.1 ID=NO05G04560.1|Name=NO05G04560.1|organism=Nannochloropsis oceanica|type=mRNA|length=1330bpback to top protein sequence of NO05G04560.1 >NO05G04560.1-protein ID=NO05G04560.1-protein|Name=NO05G04560.1|organism=Nannochloropsis oceanica|type=polypeptide|length=266bpback to top mRNA from alignment at chr5:1182468..1183797+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>NO05G04560.1 ID=NO05G04560.1|Name=NO05G04560.1|organism=Nannochloropsis oceanica|type=mRNA|length=1330bp|location=Sequence derived from alignment at chr5:1182468..1183797+ (Nannochloropsis oceanica)back to top Coding sequence (CDS) from alignment at chr5:1182468..1183797+ >NO05G04560.1 ID=NO05G04560.1|Name=NO05G04560.1|organism=Nannochloropsis oceanica|type=CDS|length=798bp|location=Sequence derived from alignment at chr5:1182468..1183797+ (Nannochloropsis oceanica)back to top Synonyms
Publications
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