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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr5 | genome | chr5:1179923..1182465 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO05G04550.1 vs.
Match: XP_005855722.1 (sphingosine-1-phosphate lyase [Nannochloropsis gaditana CCMP526]; EKU20644.1 sphingosine-1-phosphate lyase [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 908.7 bits (2347), Expect = 1.000e-260 Identity = 456/605 (75.37%), Postives = 522/605 (86.28%), Query Frame = 0
Query: 9 GRSLELALRGALFLEHAVFFVVACRTLNIFRQKGFVGVYSATFKALRNLPGVEILIQSLVRREVEGAVRRLAKSESQITREAHRPMLRLPLEGISGEEILQQLEALKAAERRSSKTGHKSLGYVHYDPEAGTQRLNAHCQVLLKAFRALEERSGVDVTGDHDRLVEMAFAAFLSESTNPSNPALVPVIRKCENEVIAMTASLLHGDEEVVGSLTSGTAESILLTVKTYRDLARAALPHITDPEMILPLTAHPAFIKAGHLFGVRVITVAVGPDKRVSLEAVEAAVTSNTILLVASAPQAPHGVIDPIPCLADMARELNVPLHIDAHLGGFMLPFLEKLGYDVPRWDFRCAGVMSINVDMHRYGYCIKGTSVLLYRNTDLRAHQFFTYTEWPGGVFGSPSLTGSRPGGNIAAAWASMMLLGESGYLALAKTTMDVTERLKEGIRGVGGLGLVAEPDMTCLAIVSRDPKVCILLVGDAMEEKGWWMERQQAPASLHLSVMPHHNEVCDSFLLDLKTSVENVRRQGAAALTTKGKADIYGLVESMPDRSLLANFVVQLYNSTYRLSREDGENIVSMVSPSFERGGLEALGEEDDEEDDEEDVEEEGRE 614
GR LA G + LEHAVFFVVACRTLNI R KGFVGVYSATFKALRNLPGVE LIQ L+RR+VEGAVRRLAKSESQI REAHRP+LRLP+EG+SGEEI+QQLEALKAAERRS + G K+ GYVHY+ E GT L+AH QVLL+AFR+ EE SG D TG HD++V MAF AFLSESTNPSNP L+PV+RKCENEVIAMTASLLHGDEEVVG+LTSG++ESILLTVKTYRD+ARA LPH+ +PE+++P+TAHPAF+KAG LFGVR++ V +GPDKRVSL AVEAA++ NTILLVASAPQ PHGV+DPIP LA MA+E NVPLH+DA LGGFMLPFLEKLGY+V WDFR GV SI+VDMH+YGYCIKG SVLLYRN D+RAHQFF+YTEWPGGVFGSPSLTG+RPGGN+AAAWA MM LGE GYL LAKT M+V LKEG+R V GLGLVAEP+MTCLAI+SRDP++CILLVGD MEEKGWWMERQQAPASLHLSVMPHH EV D FL DLK SVE+VRR+GA AL ++GKADIYG+VES+PDRSLL+NFVV+LYN T+RL R+D ++SP GL ALGEE++EE++EE+ EEE E
Sbjct: 8 GRGRALASHGLVLLEHAVFFVVACRTLNIIRTKGFVGVYSATFKALRNLPGVERLIQRLLRRQVEGAVRRLAKSESQICREAHRPVLRLPVEGLSGEEIMQQLEALKAAERRSMERGCKAFGYVHYNAE-GTP-LSAHTQVLLEAFRSFEESSGADTTGYHDKVVNMAFTAFLSESTNPSNPVLIPVVRKCENEVIAMTASLLHGDEEVVGTLTSGSSESILLTVKTYRDMARATLPHVREPEILVPITAHPAFVKAGALFGVRIVIVPIGPDKRVSLAAVEAAISPNTILLVASAPQQPHGVVDPIPALAGMAQEQNVPLHVDAGLGGFMLPFLEKLGYEVTPWDFRLDGVSSISVDMHKYGYCIKGASVLLYRNADMRAHQFFSYTEWPGGVFGSPSLTGTRPGGNVAAAWAGMMQLGEKGYLRLAKTAMEVCHCLKEGVRSVRGLGLVAEPEMTCLAILSRDPRLCILLVGDVMEEKGWWMERQQAPASLHLSVMPHHQEVADRFLQDLKASVEDVRRRGARALHSRGKADIYGIVESIPDRSLLSNFVVKLYNETHRLRRDDDS---VLISPCMVEEGLGALGEEEEEEEEEEEEEEEEGE 607
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO05G04550.1 ID=NO05G04550.1|Name=NO05G04550.1|organism=Nannochloropsis oceanica|type=mRNA|length=2176bp
GCTTGTTCTACGAGATCAAAATGACACTTCCAACTCACAGCACACAATGA
AGATATATATCTCGCTACTGGATCCTGATGTATGCGAATCACCTCAATTG
CCTGCTTTCCCAAGTCTCCGGTCTCATCTCTAGCTCCTTATTGACACACT
TTCTCACTACCCCGGCCTTCCCCCACGCGATCCATGGCGACAGCGCGAAA
GACCCCCTTCGTGACGTGCCCGTGCCCCTGGCCTGCCGCACGCGCGCCCT
TCTTCTCCCTTTTCGACTCCTCGTCCGTGTGCAGGCCTCCGTCTTTATCT
CCCCCCTACCTCCTTCTTCTTCACCTCCACCATGGCCCGAGGCAGCAGCG
GCAGTGGCAGAAGCTTGGAGCTCGCCTTGCGCGGGGCGTTGTTCCTGGAG
CACGCCGTCTTTTTCGTCGTCGCCTGCCGGACACTCAACATATTTCGGCA
AAAGGGCTTTGTGGGTGTGTACAGCGCAACATTTAAGGCCTTGCGAAACC
TGCCGGGGGTGGAAATTCTTATCCAGAGCTTGGTCCGACGAGAGGTGGAA
GGAGCCGTGCGGCGGCTAGCTAAAAGTGAGTCGCAAATCACCCGCGAAGC
CCATCGCCCCATGCTTCGTTTGCCTTTGGAAGGAATTTCGGGAGAGGAAA
TATTGCAACAGTTGGAGGCGTTGAAAGCGGCCGAGAGGAGGAGTTCCAAG
ACAGGACACAAATCGTTGGGGTACGTGCACTATGATCCTGAAGCAGGAAC
ACAACGGCTGAACGCGCATTGCCAGGTATTGCTCAAGGCCTTTCGCGCGT
TAGAAGAGCGAAGTGGCGTGGATGTGACGGGAGACCATGATAGATTGGTG
GAGATGGCGTTTGCGGCTTTTCTGAGTGAGTCGACGAATCCGAGTAATCC
CGCTTTGGTGCCCGTCATTCGCAAGTGTGAAAACGAGGTCATTGCCATGA
CCGCCTCCCTCCTCCACGGCGATGAAGAGGTCGTTGGTTCTCTCACCAGT
GGCACTGCGGAAAGCATTCTTCTCACGGTCAAGACGTATCGCGACTTGGC
TAGAGCAGCCCTTCCCCATATCACCGATCCCGAGATGATCCTCCCCCTCA
CAGCCCACCCCGCCTTCATCAAGGCCGGGCATTTATTTGGGGTCCGTGTC
ATAACGGTGGCGGTTGGTCCGGATAAACGGGTGTCGTTGGAGGCGGTTGA
GGCTGCGGTAACGAGCAATACAATCTTGTTGGTGGCGTCAGCACCACAGG
CCCCCCACGGGGTGATTGACCCTATCCCTTGCTTGGCGGACATGGCCAGA
GAATTGAACGTGCCTTTGCATATAGACGCGCATTTGGGAGGCTTTATGTT
GCCATTCTTGGAGAAACTGGGATATGACGTGCCAAGATGGGATTTTCGGT
GTGCGGGCGTGATGAGTATCAATGTGGATATGCATCGATATGGCTACTGC
ATCAAAGGCACCTCCGTCCTCCTCTACCGTAACACGGACCTCCGTGCCCA
CCAGTTTTTTACCTACACCGAGTGGCCTGGTGGGGTCTTTGGATCTCCTT
CCTTGACGGGGTCAAGGCCGGGAGGGAACATCGCCGCCGCGTGGGCGAGC
ATGATGCTTTTGGGGGAGAGTGGGTACCTCGCTCTGGCCAAGACGACGAT
GGATGTGACTGAACGGTTGAAGGAGGGCATCAGGGGGGTGGGGGGGTTGG
GGCTTGTGGCAGAGCCGGATATGACGTGTCTGGCGATTGTGAGCAGGGAT
CCGAAGGTATGTATTTTACTCGTGGGCGATGCGATGGAGGAGAAGGGATG
GTGGATGGAGAGGCAACAAGCACCTGCCTCTCTGCACTTGTCGGTGATGC
CTCACCATAACGAGGTTTGTGACAGTTTCTTGCTTGATCTCAAAACATCG
GTGGAGAACGTGAGGAGGCAGGGAGCGGCGGCGCTCACGACAAAGGGGAA
AGCGGATATATATGGGTTGGTGGAGTCGATGCCCGACCGGAGTTTGTTGG
CAAACTTTGTGGTACAGCTTTATAATAGCACGTACCGGTTAAGTAGGGAG
GATGGGGAGAACATTGTGAGCATGGTCTCGCCTTCGTTTGAGAGGGGAGG
CTTGGAAGCTTTGGGGGAGGAGGACGACGAGGAGGACGACGAGGAGGACG
TCGAGGAGGAAGGACGAGAAAGGTGA back to topprotein sequence of NO05G04550.1 >NO05G04550.1-protein ID=NO05G04550.1-protein|Name=NO05G04550.1|organism=Nannochloropsis oceanica|type=polypeptide|length=615bp
MARGSSGSGRSLELALRGALFLEHAVFFVVACRTLNIFRQKGFVGVYSAT
FKALRNLPGVEILIQSLVRREVEGAVRRLAKSESQITREAHRPMLRLPLE
GISGEEILQQLEALKAAERRSSKTGHKSLGYVHYDPEAGTQRLNAHCQVL
LKAFRALEERSGVDVTGDHDRLVEMAFAAFLSESTNPSNPALVPVIRKCE
NEVIAMTASLLHGDEEVVGSLTSGTAESILLTVKTYRDLARAALPHITDP
EMILPLTAHPAFIKAGHLFGVRVITVAVGPDKRVSLEAVEAAVTSNTILL
VASAPQAPHGVIDPIPCLADMARELNVPLHIDAHLGGFMLPFLEKLGYDV
PRWDFRCAGVMSINVDMHRYGYCIKGTSVLLYRNTDLRAHQFFTYTEWPG
GVFGSPSLTGSRPGGNIAAAWASMMLLGESGYLALAKTTMDVTERLKEGI
RGVGGLGLVAEPDMTCLAIVSRDPKVCILLVGDAMEEKGWWMERQQAPAS
LHLSVMPHHNEVCDSFLLDLKTSVENVRRQGAAALTTKGKADIYGLVESM
PDRSLLANFVVQLYNSTYRLSREDGENIVSMVSPSFERGGLEALGEEDDE
EDDEEDVEEEGRER* back to topmRNA from alignment at chr5:1179923..1182465- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO05G04550.1 ID=NO05G04550.1|Name=NO05G04550.1|organism=Nannochloropsis oceanica|type=mRNA|length=2543bp|location=Sequence derived from alignment at chr5:1179923..1182465- (Nannochloropsis oceanica)
GCTTGTTCTACGAGATCAAAATGACACTTCCAACTCACAGCACACAATGA
AGATATATATCTCGCTACTGGATCCTGATGTATGCGAATCACCTCAATTG
CCTGCTTTCCCAAGTCTCCGGTCTCATCTCTAGCTCCTTATTGACACACT
TTCTCACTACCCCGGCCTTCCCCCACGCGATCCATGGCGACAGCGCGAAA
GACCCCCTTCGTGACGTGCCCGTGCCCCTGGCCTGCCGCACGCGCGCCCT
TCTTCTCCCTTTTCGACTCCTCGTCCGTGTGCAGGCCTCCGTCTTTATCT
CCCCCCTACCTCCTTCTTCTTCACCTCCACCATGGCCCGAGGCAGCAGCG
GCAGTGGCAGAAGCTTGGAGCTCGCCTTGCGCGGGGCGTTGTTCCTGGAG
CACGCCGTCTTTTTCGTCGTCGCCTGCCGGACACTCAACATATTTCGGCA
AAAGGGCTTTGTGGGTGTGTACAGCGCAACATTTAAGGCCTTGCGAAACC
TGCCGGGGGTGGAAATTCTTATCCAGAGCTTGGTCCGACGAGAGGTGGAA
GGAGCCGTGCGGCGGCTAGCTAAAAGTGAGTCGCAAATCACCCGCGAAGC
CCATCGCCCCATGCTTCGTTTGCCTTTGGAAGGAATTTCGGGAGAGGAAA
TATTGCAACAGTTGGAGGCGTTGAAAGCGGCCGAGAGGAGGAGTTCCAAG
ACAGGACACAAATCGTTGGGGTACGTGCACTATGATCCTGAAGCAGGAAC
ACAACGGCTGAACGCGCATTGCCAGGTATTGCTCAAGGCCTTTCGCGCGT
TAGAAGAGCGAAGTGGCGTGGATGTGACGGGAGACCATGATAGATTGGTG
GAGATGGCGTTTGCGGCTTTTCTGAGTGAGTCGACGAATCCGAGTAATCC
CGCTTTGGTGCCCGTCATTCGCAAGGTAGGGAGGTTGGCTTGTGTCACGT
AAATTAGGAGAAAGAACGAGACGAGAGCGGAGGAGGGAAGAAGAAATTTA
TCTGCATGAATATGAGAAAGGATGAGGGGGAGGGTTTAGGGGATGAGGCC
CGTGGCGCTTTCCGACCTGATGTGACAACAATCATTGACACCACCCTTCC
CATCCTCCCTTCCTCCCTCCCTTTCTTAACCACAGTGTGAAAACGAGGTC
ATTGCCATGACCGCCTCCCTCCTCCACGGCGATGAAGAGGTCGTTGGTTC
TCTCACCAGTGGCACTGCGGAAAGCATTCTTCTCACGGTCAAGACGTATC
GCGACTTGGCTAGAGCAGCCCTTCCCCATATCACCGATCCCGAGATGATC
CTCCCCCTCACAGCCCACCCCGCCTTCATCAAGGCCGGGCATTTATTTGG
GGTCCGTGTCATAACGGTGGCGGTTGGTCCGGATAAACGGGTGTCGTTGG
AGGCGGTTGAGGCTGCGGTAACGAGCAATACAATCTTGTTGGTGGCGTCA
GCACCACAGGCCCCCCACGGGGTGATTGACCCTATCCCTTGCTTGGCGGA
CATGGCCAGAGAATTGAACGTGCCTTTGCATATAGACGCGCATTTGGGAG
GCTTTATGTTGCCATTCTTGGAGAAACTGGGATATGACGTGCCAAGATGG
GATTTTCGGTGTGCGGGCGTGATGAGTATCAATGTGGATATGCATCGATA
TGGCTGTACGTACCGAATGAAGGAGGGGGGGATAGGGGATGGGGGGTAAG
GAGGCTTGTCGGGGTGTTGACTGTAGTCGTTCCTCTATTTTTCTCCTGTT
TCTCATCCCTGAGTCCTCCCTTCCTCCCTTCCTCCCTTCCTCCCTTTCCT
TCTTCCCCTCAGACTGCATCAAAGGCACCTCCGTCCTCCTCTACCGTAAC
ACGGACCTCCGTGCCCACCAGTTTTTTACCTACACCGAGTGGCCTGGTGG
GGTCTTTGGATCTCCTTCCTTGACGGGGTCAAGGCCGGGAGGGAACATCG
CCGCCGCGTGGGCGAGCATGATGCTTTTGGGGGAGAGTGGGTACCTCGCT
CTGGCCAAGACGACGATGGATGTGACTGAACGGTTGAAGGAGGGCATCAG
GGGGGTGGGGGGGTTGGGGCTTGTGGCAGAGCCGGATATGACGTGTCTGG
CGATTGTGAGCAGGGATCCGAAGGTATGTATTTTACTCGTGGGCGATGCG
ATGGAGGAGAAGGGATGGTGGATGGAGAGGCAACAAGCACCTGCCTCTCT
GCACTTGTCGGTGATGCCTCACCATAACGAGGTTTGTGACAGTTTCTTGC
TTGATCTCAAAACATCGGTGGAGAACGTGAGGAGGCAGGGAGCGGCGGCG
CTCACGACAAAGGGGAAAGCGGATATATATGGGTTGGTGGAGTCGATGCC
CGACCGGAGTTTGTTGGCAAACTTTGTGGTACAGCTTTATAATAGCACGT
ACCGGTTAAGTAGGGAGGATGGGGAGAACATTGTGAGCATGGTCTCGCCT
TCGTTTGAGAGGGGAGGCTTGGAAGCTTTGGGGGAGGAGGACGACGAGGA
GGACGACGAGGAGGACGTCGAGGAGGAAGGACGAGAAAGGTGA back to topCoding sequence (CDS) from alignment at chr5:1179923..1182465- >NO05G04550.1 ID=NO05G04550.1|Name=NO05G04550.1|organism=Nannochloropsis oceanica|type=CDS|length=1845bp|location=Sequence derived from alignment at chr5:1179923..1182465- (Nannochloropsis oceanica)
ATGGCCCGAGGCAGCAGCGGCAGTGGCAGAAGCTTGGAGCTCGCCTTGCG
CGGGGCGTTGTTCCTGGAGCACGCCGTCTTTTTCGTCGTCGCCTGCCGGA
CACTCAACATATTTCGGCAAAAGGGCTTTGTGGGTGTGTACAGCGCAACA
TTTAAGGCCTTGCGAAACCTGCCGGGGGTGGAAATTCTTATCCAGAGCTT
GGTCCGACGAGAGGTGGAAGGAGCCGTGCGGCGGCTAGCTAAAAGTGAGT
CGCAAATCACCCGCGAAGCCCATCGCCCCATGCTTCGTTTGCCTTTGGAA
GGAATTTCGGGAGAGGAAATATTGCAACAGTTGGAGGCGTTGAAAGCGGC
CGAGAGGAGGAGTTCCAAGACAGGACACAAATCGTTGGGGTACGTGCACT
ATGATCCTGAAGCAGGAACACAACGGCTGAACGCGCATTGCCAGGTATTG
CTCAAGGCCTTTCGCGCGTTAGAAGAGCGAAGTGGCGTGGATGTGACGGG
AGACCATGATAGATTGGTGGAGATGGCGTTTGCGGCTTTTCTGAGTGAGT
CGACGAATCCGAGTAATCCCGCTTTGGTGCCCGTCATTCGCAAGTGTGAA
AACGAGGTCATTGCCATGACCGCCTCCCTCCTCCACGGCGATGAAGAGGT
CGTTGGTTCTCTCACCAGTGGCACTGCGGAAAGCATTCTTCTCACGGTCA
AGACGTATCGCGACTTGGCTAGAGCAGCCCTTCCCCATATCACCGATCCC
GAGATGATCCTCCCCCTCACAGCCCACCCCGCCTTCATCAAGGCCGGGCA
TTTATTTGGGGTCCGTGTCATAACGGTGGCGGTTGGTCCGGATAAACGGG
TGTCGTTGGAGGCGGTTGAGGCTGCGGTAACGAGCAATACAATCTTGTTG
GTGGCGTCAGCACCACAGGCCCCCCACGGGGTGATTGACCCTATCCCTTG
CTTGGCGGACATGGCCAGAGAATTGAACGTGCCTTTGCATATAGACGCGC
ATTTGGGAGGCTTTATGTTGCCATTCTTGGAGAAACTGGGATATGACGTG
CCAAGATGGGATTTTCGGTGTGCGGGCGTGATGAGTATCAATGTGGATAT
GCATCGATATGGCTACTGCATCAAAGGCACCTCCGTCCTCCTCTACCGTA
ACACGGACCTCCGTGCCCACCAGTTTTTTACCTACACCGAGTGGCCTGGT
GGGGTCTTTGGATCTCCTTCCTTGACGGGGTCAAGGCCGGGAGGGAACAT
CGCCGCCGCGTGGGCGAGCATGATGCTTTTGGGGGAGAGTGGGTACCTCG
CTCTGGCCAAGACGACGATGGATGTGACTGAACGGTTGAAGGAGGGCATC
AGGGGGGTGGGGGGGTTGGGGCTTGTGGCAGAGCCGGATATGACGTGTCT
GGCGATTGTGAGCAGGGATCCGAAGGTATGTATTTTACTCGTGGGCGATG
CGATGGAGGAGAAGGGATGGTGGATGGAGAGGCAACAAGCACCTGCCTCT
CTGCACTTGTCGGTGATGCCTCACCATAACGAGGTTTGTGACAGTTTCTT
GCTTGATCTCAAAACATCGGTGGAGAACGTGAGGAGGCAGGGAGCGGCGG
CGCTCACGACAAAGGGGAAAGCGGATATATATGGGTTGGTGGAGTCGATG
CCCGACCGGAGTTTGTTGGCAAACTTTGTGGTACAGCTTTATAATAGCAC
GTACCGGTTAAGTAGGGAGGATGGGGAGAACATTGTGAGCATGGTCTCGC
CTTCGTTTGAGAGGGGAGGCTTGGAAGCTTTGGGGGAGGAGGACGACGAG
GAGGACGACGAGGAGGACGTCGAGGAGGAAGGACGAGAAAGGTGA back to top
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