NO05G04540.3, NO05G04540.3 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO05G04540.3
Unique Name	NO05G04540.3
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2276
Alignment location	chr5:1177282..1180410 +

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr5	genome	chr5:1177282..1180410 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO05G04540.3 vs.
Match: EWM27937.1 (Peptidase S1C [Nannochloropsis gaditana])

HSP 1 Score: 559.3 bits (1440), Expect = 8.700e-156
Identity = 283/337 (83.98%), Postives = 311/337 (92.28%), Query Frame = 0

Query:   22 PSRSVYPQTLPPKGSAHGNGLGRYFVADAVEAAAPAVANITVNIKFHAGRWMPTYATQSGSGFVISEDGLVVTNAHVVASSIGEDNPVMITLTDGRRFSGKVHSVDTRTDVALLQVETKGQKLPVARIGQSSSLRPGEWVVALGSPQGLANTVTVGIVSAVARLGSELGLLHTRAEYIQTDAAINAGNSGGPLVNLDGEVVGISSMKLEYSDGIGFAIPIDSAYQIIKQLVKYKRVRRPYVGLSFRLVTVEGLKPTKE-TKEVGMLVLEVKPGSPAEKAGLQEGDVIVEIDGAKVRGLGDVTEKIGLEPERTFQVKVIREGEGKQMVMGVTSVADER 358
            PS    PQ LPPKGSAHGNGLGRYFVADAVEAAAPAVANITVNI+FHAGRW PTYATQSGSGFVISEDGLVVTNAHV+ASS+G D PVMITLTDGR+FSGKVHS+D RTDVALLQ +T+G KLPVARIGQSS+LRPGEWVVALGSPQGLANTVTVGIVS VARLGSELGL+HTRAEYIQTDAAINAGNSGGPLVNLDGEVVGI+SMKLEYSDGIGFAIPIDSA+Q+++QL+KYKRVRRPYVGLSFRLV VEG +  +   KE+GMLVLEVK GSPAEKAGLQEGDV++EIDG++V+GLGDVTEKIGLEPE+TF VKV+R G+   ++M VTSVADER
Sbjct:   80 PSVCRVPQPLPPKGSAHGNGLGRYFVADAVEAAAPAVANITVNIRFHAGRWTPTYATQSGSGFVISEDGLVVTNAHVIASSMGGDEPVMITLTDGRKFSGKVHSIDARTDVALLQADTQGAKLPVARIGQSSNLRPGEWVVALGSPQGLANTVTVGIVSTVARLGSELGLMHTRAEYIQTDAAINAGNSGGPLVNLDGEVVGINSMKLEYSDGIGFAIPIDSAFQVVQQLIKYKRVRRPYVGLSFRLVNVEGAEGERAGEKELGMLVLEVKAGSPAEKAGLQEGDVVIEIDGSRVKGLGDVTEKIGLEPEKTFTVKVMRHGQRYPLMMSVTSVADER 416

The following BLAST results are available for this feature:

BLAST of NO05G04540.3 vs.

BLAST of NO05G04540.3 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM27937.1	8.700e-156	83.98	Peptidase S1C [Nannochloropsis gaditana]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO05G04540	NO05G04540	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO05G04540.3	NO05G04540.3-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO05G04540.3.cds1	NO05G04540.3.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO05G04540.3.cds2	NO05G04540.3.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO05G04540.3.cds3	NO05G04540.3.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO05G04540.3.cds4	NO05G04540.3.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO05G04540.3.cds5	NO05G04540.3.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr5:1177282..1180410+
coding sequence from alignment at chr5:1177282..1180410+

mRNA sequence

>NO05G04540.3 ID=NO05G04540.3|Name=NO05G04540.3|organism=Nannochloropsis oceanica|type=mRNA|length=2276bp
AACATAAGCCACAGTAGGCATGCGTCGACACGGCTGGAATCTCCTTCGAC
GCGCGACGCGGGGGCACCACCTGGCACCGGTAGCTTTTTTATCGTCGAGC
AGACAAGCTACCGCGGCATCCAATGCCACCTTTCCCTTGACTTCCCTCCA
TCGAAGCCCTACGTCCCCTGCCTCCTCCATCTCCTCACCCTGTCATGCTA
CACCTCACACTACAACGACGGCAACTGCCGCTGCCTTGTTGCTGGGCGCG
CTGCTCCTAGGACAAGATCACGAAAATGTTGCGGCTCAGGACGCGAAGGT
ATTTCGTTTCTTAGCGTGTAGGATAGCAGGCCTCTATTTGGTAACGCAGA
GCGCCCAATGTCACATTTGCTGCGTTCCTATCCATTTCTTTTTCTCTCCT
CTCCACGGATCATCAACAAGCATGAAGAATGTTGCATTGCAATCGTCAGA
GGATAATTATCAACTCATCTTCTTTCTTGTCTTTCATCCCTCCCTCGCGT
TCGGTATACCCGCAGACTCTCCCTCCCAAAGGCTCTGCTCACGGCAATGG
CCTCGGCCGCTACTTCGTCGCTGACGCTGTCGAAGCCGCCGCACCCGCCG
TGGCCAACATAACAGTTAACATCAAATTCCACGCAGGGAGGTGGATGCCT
ACATATGCGACACAGTCAGGTTCCGGGTTTGTGATCTCAGAAGATGGGCT
GGTGGTGACGAACGCACATGTGGTTGCCTCAAGCATAGGAGAGGACAATC
CGGTAATGATAACCCTGACGGATGGACGGAGATTTTCAGGGAAGGTGCAC
AGCGTTGACACTCGTACCGACGTAGCCCTGCTGCAAGTAGAGACCAAGGG
ACAAAAGCTGCCAGTGGCTCGGATCGGTCAAAGCTCGAGCTTGCGGCCGG
GCGAATGGGTGGTGGCGTTGGGGAGCCCCCAGGGGTTGGCCAACACTGTG
ACTGTGGGAATCGTGAGTGCGGTGGCAAGGCTGGGATCGGAGTTGGGGTT
ATTGCACACCAGGGCGGAGTATATCCAGACGGACGCCGCGATTAATGCTG
GGAATTCGGGTGGACCCCTGGTTAACCTTGATGGAGAGGTGGTGGGTATT
AGCAGCATGAAGCTCGAGTACTCGGACGGCATCGGGTTTGCAATTCCCAT
TGACAGCGCCTACCAGATTATAAAACAACTTGTCAAATACAAGCGAGTCC
GCCGTCCTTATGTCGGCCTCTCCTTCCGCCTCGTCACCGTCGAAGGTTTG
AAGCCCACCAAAGAGACAAAAGAGGTGGGCATGTTGGTACTCGAAGTAAA
GCCGGGGAGCCCGGCAGAGAAAGCAGGGTTGCAGGAAGGAGATGTGATCG
TAGAGATCGATGGGGCTAAAGTGAGGGGGTTGGGAGATGTGACGGAGAAA
ATTGGATTGGAGCCGGAGAGGACGTTCCAAGTCAAGGTGATCAGGGAGGG
GGAAGGAAAACAGATGGTGATGGGTGTGACAAGCGTGGCGGATGAGAGGG
GGGAGTGAGGGAGAAGGAGGTACAGACGGAAAGGGGGACGATGAGAGAAT
TTACGACTGTAGGGAGAAAGTATAGGAGGTGGTGAGGAGAGAAGGAAGAA
TATGGTAGGATTGTGTTTTGAAAACAGAAAAAAACAGGAGAAATGTTATG
CTTTCTTTTGCTCGCTTGCTTTGGTTGTGATTATTCGTTGTTTATCGATA
GTGTCCGTTGCTAATAAAAGGTCATGCTCATTTGTTATTTACGTTTGAAG
GCATCGTTGTTCTCTTTTTGTCGTCAATGCTGCCGATGTCACCTTTCTCG
TCCTTCCTCCTCGACGTCCTCCTCGTCGTCCTCCTCGTCGTCCTCCTCCC
CCAAAGCTTCCAAGCCTCCCCTCTCAAACGAAGGCGAGACCATGCTCACA
ATGTTCTCCCCATCCTCCCTACTTAACCGGTACGTGCTATTATAAAGCTG
TACCACAAAGTTTGCCAACAAACTCCGGTCGGGCATCGACTCCACCAACC
CATATATATCCGCTTTCCCCTTTGTCGTGAGCGCCGCCGCTCCCTGCCTC
CTCACGTTCTCCACCGATGTTTTGAGATCAAGCAAGAAACTGTCACAAAC
CTCGTTATGGTGAGGCATCACCGACAAGTGCAGAGAGGCAGGTGCTTGTT
GCCTCTCCATCCACCATCCCTTCTCCTCCATCGCATCGCCCACGAGTAAA
ATACATACCTTCGGATCCCTGCTCACAATCGCCAGACACGTCATATCCGG
CTCTGCCACAAGCCCCAACCCCCCCA

protein sequence of NO05G04540.3

>NO05G04540.3-protein ID=NO05G04540.3-protein|Name=NO05G04540.3|organism=Nannochloropsis oceanica|type=polypeptide|length=360bp
MLHCNRQRIIINSSSFLSFIPPSRSVYPQTLPPKGSAHGNGLGRYFVADA
VEAAAPAVANITVNIKFHAGRWMPTYATQSGSGFVISEDGLVVTNAHVVA
SSIGEDNPVMITLTDGRRFSGKVHSVDTRTDVALLQVETKGQKLPVARIG
QSSSLRPGEWVVALGSPQGLANTVTVGIVSAVARLGSELGLLHTRAEYIQ
TDAAINAGNSGGPLVNLDGEVVGISSMKLEYSDGIGFAIPIDSAYQIIKQ
LVKYKRVRRPYVGLSFRLVTVEGLKPTKETKEVGMLVLEVKPGSPAEKAG
LQEGDVIVEIDGAKVRGLGDVTEKIGLEPERTFQVKVIREGEGKQMVMGV
TSVADERGE*

mRNA from alignment at chr5:1177282..1180410+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO05G04540.3 ID=NO05G04540.3|Name=NO05G04540.3|organism=Nannochloropsis oceanica|type=mRNA|length=3129bp|location=Sequence derived from alignment at chr5:1177282..1180410+ (Nannochloropsis oceanica)
AACATAAGCCACAGTAGGCATGCGTCGACACGGCTGGAATCTCCTTCGAC
GCGCGACGCGGGGGCACCACCTGGCACCGGTAGCTTTTTTATCGTCGAGC
AGGTTAGTCAAAGTGAAGGGCTCTTGGCCCCTGAGTGGAACATATCGACA
GACGAGGCTTGTATGTGAGTCGTACAGGTCCCAAGTCCACTTAAGCCGGC
CCTGTATACCCTTATACACTGTACAGACAAGCTACCGCGGCATCCAATGC
CACCTTTCCCTTGACTTCCCTCCATCGAAGCCCTACGTCCCCTGCCTCCT
CCATCTCCTCACCCTGTCATGCTACACCTCACACTACAACGACGGCAACT
GCCGCTGCCTTGTTGCTGGGCGCGCTGCTCCTAGGACAAGATCACGAAAA
TGTTGCGGCTCAGGACGCGAAGGTATTTCGTTTCTTAGCGTGTAGGATAG
CAGGCCTCTATTTGGTAACGCAGAGCGCCCAATGTCACATTTGCTGCGTT
CCTATCCATTTCTTTTTCTCTCCTCTCCACGGATCATCAACAAGCATGAA
GAATGTTGCATTGCAATCGTCAGAGGATAATTATCAACTCATCTTCTTTC
TTGTCTTTCATCCCTCCCTCGCGTTCGGTATACCCGCAGACTCTCCCTCC
CAAAGGCTCTGCTCACGGCAATGGCCTCGGCCGCTACTTCGTCGCTGACG
CTGTCGAAGCCGCCGCACCCGCCGTGGCCAACATAACAGTTAACATCAAA
TTCCACGCAGGGAGGTGGATGCCTACATATGCGACACAGTCAGGTACGAT
AAGCTCCGATTCGATGCATGCGGGAGAAAAGGAGGGAGGGAGGGAGGGAG
GGAGGAAGGAAGGAAGGGAAGGGGTAAGGACTCGTGAGTACTAGCACTTT
ACCAACACGGTTCTGACCTCGCGTCTTCCTTTCTTAGAGCCTTCATAACG
ATCCTTGGACCTATACCAAGGCAAGGCATACCCATCATAACGCACCCTGA
TCCAACTAATGAAACGCTTTACGCGCACATTCAGGTTCCGGGTTTGTGAT
CTCAGAAGATGGGCTGGTGGTGACGAACGCACATGTGGTTGCCTCAAGCA
TAGGAGAGGACAATCCGGTAATGATAACCCTGACGGATGGACGGAGATTT
TCAGGGAAGGTAAGGGAAAAAGGAAAAGGAGAAAGTGAAAAGGAGCGAGG
GGTTGTGGCTCCTATTTGAAAAGCCAGTAGTATGCTAACTTTCCCCTCCC
TCCCTCCCTCCATCTCTCCCCCACTCCGTTCCTCCTTTCCTCATTTCCTC
CCGTTCCACCAGGTGCACAGCGTTGACACTCGTACCGACGTAGCCCTGCT
GCAAGTAGAGACCAAGGGACAAAAGCTGCCAGTGGCTCGGATCGGTCAAA
GCTCGAGCTTGCGGCCGGGCGAATGGGTGGTGGCGTTGGGGAGCCCCCAG
GGGTTGGCCAACACTGTGACTGTGGGAATCGTGAGTGCGGTGGCAAGGCT
GGGATCGGAGTTGGGGTTATTGCACACCAGGGCGGAGTATATCCAGACGG
ACGCCGCGATTAATGCTGGGAATTCGGGTGCGTTGCGTGGTTCCATTGTA
CTTATTCATCTACCCACCCCTTTGTAATTATATGTTCATTTAGTTGATAA
AAATGCATATCCTATTCATTTACTAATTTTCGATTTCTTTCTCTTCATTT
CAATCTATTAGTAGATCTTACATTTTCCTAATCCACCAAATTACGAAATT
CGAAAAACAGGTGGACCCCTGGTTAACCTTGATGGAGAGGTGGTGGGTAT
TAGCAGCATGAAGCTCGAGTACTCGGACGGCATCGGGTTTGCAATTCCCA
TTGACAGCGCCTACCAGGTAAAACTGCGGTGATGGCTAGTCGACCAACCC
CGGGGAGCGAGGGAGGGAAGGATAGCTCTACTGAATCGAGACTACTTGAG
GATTGATTCAAAAACATTATTTATTCATCCATTCTACTCCCTGAAATTGC
CTCCCTACTGGTAAACCAGATTATAAAACAACTTGTCAAATACAAGCGAG
TCCGCCGTCCTTATGTCGGCCTCTCCTTCCGCCTCGTCACCGTCGAAGGT
TTGAAGCCCACCAAAGAGACAAAAGAGGTGGGCATGTTGGTACTCGAAGT
AAAGCCGGGGAGCCCGGCAGAGAAAGCAGGGTTGCAGGAAGGAGATGTGA
TCGTAGAGATCGATGGGGCTAAAGTGAGGGGGTTGGGAGATGTGACGGAG
AAAATTGGATTGGAGCCGGAGAGGACGTTCCAAGTCAAGGTGATCAGGGA
GGGGGAAGGAAAACAGATGGTGATGGGTGTGACAAGCGTGGCGGATGAGA
GGGGGGAGTGAGGGAGAAGGAGGTACAGACGGAAAGGGGGACGATGAGAG
AATTTACGACTGTAGGGAGAAAGTATAGGAGGTGGTGAGGAGAGAAGGAA
GAATATGGTAGGATTGTGTTTTGAAAACAGAAAAAAACAGGAGAAATGTT
ATGCTTTCTTTTGCTCGCTTGCTTTGGTTGTGATTATTCGTTGTTTATCG
ATAGTGTCCGTTGCTAATAAAAGGTCATGCTCATTTGTTATTTACGTTTG
AAGGCATCGTTGTTCTCTTTTTGTCGTCAATGCTGCCGATGTCACCTTTC
TCGTCCTTCCTCCTCGACGTCCTCCTCGTCGTCCTCCTCGTCGTCCTCCT
CCCCCAAAGCTTCCAAGCCTCCCCTCTCAAACGAAGGCGAGACCATGCTC
ACAATGTTCTCCCCATCCTCCCTACTTAACCGGTACGTGCTATTATAAAG
CTGTACCACAAAGTTTGCCAACAAACTCCGGTCGGGCATCGACTCCACCA
ACCCATATATATCCGCTTTCCCCTTTGTCGTGAGCGCCGCCGCTCCCTGC
CTCCTCACGTTCTCCACCGATGTTTTGAGATCAAGCAAGAAACTGTCACA
AACCTCGTTATGGTGAGGCATCACCGACAAGTGCAGAGAGGCAGGTGCTT
GTTGCCTCTCCATCCACCATCCCTTCTCCTCCATCGCATCGCCCACGAGT
AAAATACATACCTTCGGATCCCTGCTCACAATCGCCAGACACGTCATATC
CGGCTCTGCCACAAGCCCCAACCCCCCCA

Coding sequence (CDS) from alignment at chr5:1177282..1180410+

>NO05G04540.3 ID=NO05G04540.3|Name=NO05G04540.3|organism=Nannochloropsis oceanica|type=CDS|length=1080bp|location=Sequence derived from alignment at chr5:1177282..1180410+ (Nannochloropsis oceanica)
ATGTTGCATTGCAATCGTCAGAGGATAATTATCAACTCATCTTCTTTCTT
GTCTTTCATCCCTCCCTCGCGTTCGGTATACCCGCAGACTCTCCCTCCCA
AAGGCTCTGCTCACGGCAATGGCCTCGGCCGCTACTTCGTCGCTGACGCT
GTCGAAGCCGCCGCACCCGCCGTGGCCAACATAACAGTTAACATCAAATT
CCACGCAGGGAGGTGGATGCCTACATATGCGACACAGTCAGGTTCCGGGT
TTGTGATCTCAGAAGATGGGCTGGTGGTGACGAACGCACATGTGGTTGCC
TCAAGCATAGGAGAGGACAATCCGGTAATGATAACCCTGACGGATGGACG
GAGATTTTCAGGGAAGGTGCACAGCGTTGACACTCGTACCGACGTAGCCC
TGCTGCAAGTAGAGACCAAGGGACAAAAGCTGCCAGTGGCTCGGATCGGT
CAAAGCTCGAGCTTGCGGCCGGGCGAATGGGTGGTGGCGTTGGGGAGCCC
CCAGGGGTTGGCCAACACTGTGACTGTGGGAATCGTGAGTGCGGTGGCAA
GGCTGGGATCGGAGTTGGGGTTATTGCACACCAGGGCGGAGTATATCCAG
ACGGACGCCGCGATTAATGCTGGGAATTCGGGTGGACCCCTGGTTAACCT
TGATGGAGAGGTGGTGGGTATTAGCAGCATGAAGCTCGAGTACTCGGACG
GCATCGGGTTTGCAATTCCCATTGACAGCGCCTACCAGATTATAAAACAA
CTTGTCAAATACAAGCGAGTCCGCCGTCCTTATGTCGGCCTCTCCTTCCG
CCTCGTCACCGTCGAAGGTTTGAAGCCCACCAAAGAGACAAAAGAGGTGG
GCATGTTGGTACTCGAAGTAAAGCCGGGGAGCCCGGCAGAGAAAGCAGGG
TTGCAGGAAGGAGATGTGATCGTAGAGATCGATGGGGCTAAAGTGAGGGG
GTTGGGAGATGTGACGGAGAAAATTGGATTGGAGCCGGAGAGGACGTTCC
AAGTCAAGGTGATCAGGGAGGGGGAAGGAAAACAGATGGTGATGGGTGTG
ACAAGCGTGGCGGATGAGAGGGGGGAGTGA

Synonyms

Publications