NO05G04520.1, NO05G04520.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G04520.1
Unique NameNO05G04520.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length594
Alignment locationchr5:1171132..1171725 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1171132..1171725 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G04520.1 vs.
Match: EWM27956.1 (hypothetical protein Naga_100008g107 [Nannochloropsis gaditana])

HSP 1 Score: 250.4 bits (638), Expect = 4.700e-63
Identity = 128/181 (70.72%), Postives = 152/181 (83.98%), Query Frame = 0 
Query:    1 MSVRSCSLAVLGQKRALLAAIQPAQYTQPCVLVGGGSMGQHLRHSLDHYRKLFEGVASPSSST-GASSSPTITTIQYDVRDRGTAIESDLAAARREVDRLMTEIQALPDEALTRPVQAAFVLSAGGEQASLPSTLGRELGFCTHHAIHHHALIRVIASALNINAKLPSDFGLAPSTAHYQK 181
            MS+R+ SLAVL QK++LL+A+QPAQYTQPC+LVGGGS+GQHLRHSLDH+RKLFEG+A P + T  +SSS +  +IQYDVRDRGT IE DL AARREV+RL+ +++AL  E L  PVQA FVLSA G+ A+L ST+GRELGFCTHHAIHHHALI+ IAS L I A LP DFGLAPSTAH+QK
Sbjct:  884 MSLRNASLAVLRQKKSLLSALQPAQYTQPCLLVGGGSVGQHLRHSLDHFRKLFEGIAVPKAGTVSSSSSHSHGSIQYDVRDRGTEIEKDLDAARREVERLIADVKALSSERLKDPVQATFVLSAEGDAAALCSTVGRELGFCTHHAIHHHALIKAIASDLGIQANLPHDFGLAPSTAHHQK 1064
The following BLAST results are available for this feature:
BLAST of NO05G04520.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27956.14.700e-6370.72hypothetical protein Naga_100008g107 [Nannochlorop... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G04520NO05G04520Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G04520.1NO05G04520.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G04520.1.cds1NO05G04520.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G04520.1 ID=NO05G04520.1|Name=NO05G04520.1|organism=Nannochloropsis oceanica|type=mRNA|length=594bp
ATGTCGGTACGATCCTGCAGTTTAGCTGTCCTAGGACAAAAGCGTGCCTT
GCTCGCTGCAATACAACCCGCTCAGTACACGCAGCCCTGTGTATTGGTTG
GAGGTGGAAGCATGGGACAGCATTTACGTCACTCCTTGGATCATTACCGC
AAGTTATTTGAAGGCGTTGCCTCTCCTTCCTCCTCTACTGGAGCCTCCTC
CTCTCCGACCATCACTACCATCCAGTACGACGTCCGGGACCGCGGCACGG
CGATCGAGAGCGACTTAGCTGCTGCACGACGGGAGGTGGACCGACTGATG
ACCGAGATTCAAGCGCTGCCCGACGAGGCGTTGACTCGGCCCGTGCAAGC
CGCGTTTGTTCTATCGGCAGGAGGGGAGCAAGCCTCGTTGCCCTCGACGC
TGGGGAGGGAATTAGGGTTCTGCACCCATCATGCCATACATCATCATGCC
TTGATTAGGGTGATTGCCTCAGCATTGAATATAAATGCCAAATTACCATC
TGATTTTGGATTGGCTCCCTCAACCGCACATTACCAAAAATCGAATGCGC
CTATTCCTCCTCCTACTTCTTCATCCTCTTCCTCCTCTCCGTAG
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protein sequence of NO05G04520.1

>NO05G04520.1-protein ID=NO05G04520.1-protein|Name=NO05G04520.1|organism=Nannochloropsis oceanica|type=polypeptide|length=198bp
MSVRSCSLAVLGQKRALLAAIQPAQYTQPCVLVGGGSMGQHLRHSLDHYR
KLFEGVASPSSSTGASSSPTITTIQYDVRDRGTAIESDLAAARREVDRLM
TEIQALPDEALTRPVQAAFVLSAGGEQASLPSTLGRELGFCTHHAIHHHA
LIRVIASALNINAKLPSDFGLAPSTAHYQKSNAPIPPPTSSSSSSSP*
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mRNA from alignment at chr5:1171132..1171725+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G04520.1 ID=NO05G04520.1|Name=NO05G04520.1|organism=Nannochloropsis oceanica|type=mRNA|length=594bp|location=Sequence derived from alignment at chr5:1171132..1171725+ (Nannochloropsis oceanica)
ATGTCGGTACGATCCTGCAGTTTAGCTGTCCTAGGACAAAAGCGTGCCTT
GCTCGCTGCAATACAACCCGCTCAGTACACGCAGCCCTGTGTATTGGTTG
GAGGTGGAAGCATGGGACAGCATTTACGTCACTCCTTGGATCATTACCGC
AAGTTATTTGAAGGCGTTGCCTCTCCTTCCTCCTCTACTGGAGCCTCCTC
CTCTCCGACCATCACTACCATCCAGTACGACGTCCGGGACCGCGGCACGG
CGATCGAGAGCGACTTAGCTGCTGCACGACGGGAGGTGGACCGACTGATG
ACCGAGATTCAAGCGCTGCCCGACGAGGCGTTGACTCGGCCCGTGCAAGC
CGCGTTTGTTCTATCGGCAGGAGGGGAGCAAGCCTCGTTGCCCTCGACGC
TGGGGAGGGAATTAGGGTTCTGCACCCATCATGCCATACATCATCATGCC
TTGATTAGGGTGATTGCCTCAGCATTGAATATAAATGCCAAATTACCATC
TGATTTTGGATTGGCTCCCTCAACCGCACATTACCAAAAATCGAATGCGC
CTATTCCTCCTCCTACTTCTTCATCCTCTTCCTCCTCTCCGTAG
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Coding sequence (CDS) from alignment at chr5:1171132..1171725+

>NO05G04520.1 ID=NO05G04520.1|Name=NO05G04520.1|organism=Nannochloropsis oceanica|type=CDS|length=594bp|location=Sequence derived from alignment at chr5:1171132..1171725+ (Nannochloropsis oceanica)
ATGTCGGTACGATCCTGCAGTTTAGCTGTCCTAGGACAAAAGCGTGCCTT
GCTCGCTGCAATACAACCCGCTCAGTACACGCAGCCCTGTGTATTGGTTG
GAGGTGGAAGCATGGGACAGCATTTACGTCACTCCTTGGATCATTACCGC
AAGTTATTTGAAGGCGTTGCCTCTCCTTCCTCCTCTACTGGAGCCTCCTC
CTCTCCGACCATCACTACCATCCAGTACGACGTCCGGGACCGCGGCACGG
CGATCGAGAGCGACTTAGCTGCTGCACGACGGGAGGTGGACCGACTGATG
ACCGAGATTCAAGCGCTGCCCGACGAGGCGTTGACTCGGCCCGTGCAAGC
CGCGTTTGTTCTATCGGCAGGAGGGGAGCAAGCCTCGTTGCCCTCGACGC
TGGGGAGGGAATTAGGGTTCTGCACCCATCATGCCATACATCATCATGCC
TTGATTAGGGTGATTGCCTCAGCATTGAATATAAATGCCAAATTACCATC
TGATTTTGGATTGGCTCCCTCAACCGCACATTACCAAAAATCGAATGCGC
CTATTCCTCCTCCTACTTCTTCATCCTCTTCCTCCTCTCCGTAG
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Synonyms
Publications