|
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr5 | genome | chr5:1147026..1149011 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO05G04430.1 vs.
Match: EWM27968.1 (nudix hydrolase 3 [Nannochloropsis gaditana]) HSP 1 Score: 471.5 bits (1212), Expect = 3.000e-129 Identity = 234/257 (91.05%), Postives = 245/257 (95.33%), Query Frame = 0
Query: 201 MISNYTVPALATGLRDREETLQLCAHLLANGDLEQLERVLHPYQAGLITRRRRKTRSLDLAGGLTSKHLNMLRKYLQRSPRQLTRAVSLRASVVIPLCNVNGVASVLFERRSSLVRSFKNQVCFPGGMVEESLDVNIIETSLREMEEEIGFPARSVDVLGVLRCDWSEVHKITGIGVTPVVGFLGDLTKRELSPNPDEVAECFTIPLATLLDEEHWSYEEEKGTVVFVGGPHVIWGLTAHLLLIFMKDILKRYKIRV 458
MI+NYT+PALA GLRDREETLQ CA LL +G+LEQLERVLHPYQA LITRRRRKTRSLDLAGGLTSKHLNMLRKYLQRSPRQLTRAVSLRASVVIPLCNVNGVASVLFERRS VRSFK+QVCFPGGMVEESLDVNIIETSLREMEEEIGFPARSVDVLGVLRCDWSEVHKITGIGVTPVVGFLGDLT++ELSPNP EVAECFTIPLATLLD EHW+ EEEKGTVVFVGGPHVIWGLTAHLL IF+KDIL RYK++V
Sbjct: 1 MITNYTLPALAAGLRDREETLQFCARLLEDGNLEQLERVLHPYQAELITRRRRKTRSLDLAGGLTSKHLNMLRKYLQRSPRQLTRAVSLRASVVIPLCNVNGVASVLFERRSPFVRSFKSQVCFPGGMVEESLDVNIIETSLREMEEEIGFPARSVDVLGVLRCDWSEVHKITGIGVTPVVGFLGDLTEKELSPNPKEVAECFTIPLATLLDVEHWNREEEKGTVVFVGGPHVIWGLTAHLLDIFLKDILMRYKVQV 257
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO05G04430.1 ID=NO05G04430.1|Name=NO05G04430.1|organism=Nannochloropsis oceanica|type=mRNA|length=1617bp ACACAGTCAAATAATCGTCAACCATCATGCTGCGAACGGTCCTGCGCCGC CGACTTTTGTTGGGACGTAGCCGCAGCACGCCATCATTAGCAGCACCAGC TTCACTCTTCCGACACCGGCCACCATCACTCACACCAAGCACACTTGGGT TGTCCCGGGTGCTGCACCCGCAACGCATATCGTTTGAGAGCTACTTCTCG GCAACGTTTTCGACATTTGACGACTCCTTGCCGCACAGGGACAGCCCCCA TCATAAGAAGAAGAAGCGGGCAAGAGACCCTCTAACGGCCCGTGCAGCCA AGGAGACCCCAGCTCCTGCTTCCGTCGAAGAACTTAAGCAGCACCATCAC CCGCCGGCCATTGATAACAGCGGTATCCTGCAGGAAGGGGAGGACGAACA TCGGCCGCCCGCCATCGCCGTGCGCGGGGCGCAGATGAAGGGGGGCAACG TGGTATGGCGGGCCTCCGGGGATGAAGTCAAGCAGGCCAAGCCAGCGCAA TGGGAGAAGGTCAGCGCGGAAGAAAATTTGCGCAGTACCATCAAAGAGAG TAAAGTCGGTCCGTTTGATCCGAACTTTAAGTCGTTAGGTGTCATCGAGC CGGACAAAGACCTAGATCTGCAGCTCATGATCTCAAACTACACCGTACCG GCGCTCGCCACCGGCCTTCGAGATCGAGAGGAAACTCTGCAACTCTGTGC CCATCTCCTGGCCAACGGCGACCTGGAGCAGCTTGAACGCGTGCTCCATC CTTATCAAGCAGGCCTCATCACGCGACGCCGACGGAAAACACGCAGTTTG GACTTGGCTGGAGGTTTGACCTCCAAGCATCTGAACATGCTGCGGAAGTA TCTGCAGCGCTCTCCGCGGCAATTAACTCGGGCGGTGTCCCTACGCGCAT CTGTCGTGATCCCTCTCTGCAATGTGAATGGTGTGGCCTCTGTGCTCTTT GAGCGACGCTCTAGCTTGGTCCGCTCTTTCAAGAACCAAGTCTGTTTCCC TGGTGGTATGGTGGAAGAGTCTTTAGATGTAAATATTATTGAGACATCGT TACGAGAGATGGAAGAAGAGATTGGGTTCCCGGCTAGATCGGTGGATGTG CTGGGGGTCCTGCGCTGTGACTGGTCGGAAGTGCACAAAATTACAGGTAT CGGTGTCACGCCCGTCGTCGGCTTCTTGGGCGATTTGACCAAGCGCGAGC TGTCCCCGAATCCAGACGAGGTAGCAGAATGCTTTACGATTCCCTTGGCA ACGCTCTTGGACGAGGAGCACTGGAGTTATGAGGAGGAGAAGGGCACGGT GGTGTTTGTCGGTGGGCCCCACGTAATTTGGGGCCTCACGGCCCATTTAC TTCTTATCTTCATGAAAGACATTTTGAAGCGGTATAAGATTCGTGTGTAA TAGCAAATGAAAGGATGTGGGTCAAAGATCGTTAGTGGGGTGGACATGGA AACAAATGTTGTGTTGACATGTGCATTGCATTATTACCTTGGATAGGGTC CTGATATACCGGTGTTCGGCGAGACAGGCAGAATTATAAAGTACCATGCA CAAAATCAAATTTTCGAAATCGCTTTGATTAAAAGAACCCACAAAACCAC TCAAGATGAGAAGGGCA back to topprotein sequence of NO05G04430.1 >NO05G04430.1-protein ID=NO05G04430.1-protein|Name=NO05G04430.1|organism=Nannochloropsis oceanica|type=polypeptide|length=458bp MLRTVLRRRLLLGRSRSTPSLAAPASLFRHRPPSLTPSTLGLSRVLHPQR ISFESYFSATFSTFDDSLPHRDSPHHKKKKRARDPLTARAAKETPAPASV EELKQHHHPPAIDNSGILQEGEDEHRPPAIAVRGAQMKGGNVVWRASGDE VKQAKPAQWEKVSAEENLRSTIKESKVGPFDPNFKSLGVIEPDKDLDLQL MISNYTVPALATGLRDREETLQLCAHLLANGDLEQLERVLHPYQAGLITR RRRKTRSLDLAGGLTSKHLNMLRKYLQRSPRQLTRAVSLRASVVIPLCNV NGVASVLFERRSSLVRSFKNQVCFPGGMVEESLDVNIIETSLREMEEEIG FPARSVDVLGVLRCDWSEVHKITGIGVTPVVGFLGDLTKRELSPNPDEVA ECFTIPLATLLDEEHWSYEEEKGTVVFVGGPHVIWGLTAHLLLIFMKDIL KRYKIRV* back to topmRNA from alignment at chr5:1147026..1149011+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO05G04430.1 ID=NO05G04430.1|Name=NO05G04430.1|organism=Nannochloropsis oceanica|type=mRNA|length=1986bp|location=Sequence derived from alignment at chr5:1147026..1149011+ (Nannochloropsis oceanica) ACACAGTCAAATAATCGTCAACCATCATGCTGCGAACGGTCCTGCGCCGC
CGACTTTTGTTGGGACGTAGCCGCAGCACGCCATCATTAGCAGCACCAGC
TTCACTCTTCCGACACCGGCCACCATCACTCACACCAAGCACACTTGGGT
TGTCCCGGGTGCTGCACCCGCAACGCATATCGTTTGAGAGCTACTTCTCG
GCAACGTTTTCGACATTTGACGACTCCTTGCCGCACAGGGACAGCCCCCA
TCATAAGAAGAAGAAGCGGGCAAGAGACCCTCTAACGGCCCGTGCAGCCA
AGGAGACCCCAGCTCCTGCTTCCGTCGAAGAACTTAAGCAGCACCATCAC
CCGCCGGCCATTGATAACAGCGGTATCCTGCAGGAAGGGGAGGACGAACA
TCGGCCGCCCGCCATCGCCGTGCGCGGGGCGCAGATGAAGGGGGGCAACG
TGGTATGGCGGGCCTCCGGGGATGAAGTCAAGCAGGCCAAGCCAGCGCAA
TGGGAGAAGGTCAGCGCGGAAGAAAATTTGCGCAGTACCATCAAAGAGAG
TAAAGTCGGTCCGTTTGATCCGAACTTTAAGTCGTTAGGTGTCATCGAGC
CGGTACGTGAAGAGTTTGGGAACGGGGGGAGGCTGGAGGGACGGAAAGAG
TAGCTAAGCGTCGGACCTTGTCACAAGCCAGACGGTGAATGTTTGTATGG
TTCTATAAATTTGTGCATGGTTACGATGTATTGCAATCCAGCTTGCCAGC
TTCAAACCTAATTGGGGTGGAAGATAGGCTTAATTATGGAATCGAGAGCC
CTCCCGGCAGTTTATTCAAGATCGCGTGTGCGCTACTGTCAGTACATCTT
AAGGACGAATCTTGTCGTCTGATTTCATGCATCCTTCACATTTTTCCGTA
GCTGATCGAGAAGCAGTGCCAAACCAAACACGACACAAAAGCCTCCTGAC
TACTTCCATCCCCACAAACAGGACAAAGACCTAGATCTGCAGCTCATGAT
CTCAAACTACACCGTACCGGCGCTCGCCACCGGCCTTCGAGATCGAGAGG
AAACTCTGCAACTCTGTGCCCATCTCCTGGCCAACGGCGACCTGGAGCAG
CTTGAACGCGTGCTCCATCCTTATCAAGCAGGCCTCATCACGCGACGCCG
ACGGAAAACACGCAGTTTGGACTTGGCTGGAGGTTTGACCTCCAAGCATC
TGAACATGCTGCGGAAGTATCTGCAGCGCTCTCCGCGGCAATTAACTCGG
GCGGTGTCCCTACGCGCATCTGTCGTGATCCCTCTCTGCAATGTGAATGG
TGTGGCCTCTGTGCTCTTTGAGCGACGCTCTAGCTTGGTCCGCTCTTTCA
AGAACCAAGTCTGTTTCCCTGGTGGTATGGTGGAAGAGTCTTTAGATGTA
AATATTATTGAGACATCGTTACGAGAGATGGAAGAAGAGATTGGGTTCCC
GGCTAGATCGGTGGATGTGCTGGGGGTCCTGCGCTGTGACTGGTCGGAAG
TGCACAAAATTACAGGTATCGGTGTCACGCCCGTCGTCGGCTTCTTGGGC
GATTTGACCAAGCGCGAGCTGTCCCCGAATCCAGACGAGGTAGCAGAATG
CTTTACGATTCCCTTGGCAACGCTCTTGGACGAGGAGCACTGGAGTTATG
AGGAGGAGAAGGGCACGGTGGTGTTTGTCGGTGGGCCCCACGTAATTTGG
GGCCTCACGGCCCATTTACTTCTTATCTTCATGAAAGACATTTTGAAGCG
GTATAAGATTCGTGTGTAATAGCAAATGAAAGGATGTGGGTCAAAGATCG
TTAGTGGGGTGGACATGGAAACAAATGTTGTGTTGACATGTGCATTGCAT
TATTACCTTGGATAGGGTCCTGATATACCGGTGTTCGGCGAGACAGGCAG
AATTATAAAGTACCATGCACAAAATCAAATTTTCGAAATCGCTTTGATTA
AAAGAACCCACAAAACCACTCAAGATGAGAAGGGCA back to topCoding sequence (CDS) from alignment at chr5:1147026..1149011+ >NO05G04430.1 ID=NO05G04430.1|Name=NO05G04430.1|organism=Nannochloropsis oceanica|type=CDS|length=1374bp|location=Sequence derived from alignment at chr5:1147026..1149011+ (Nannochloropsis oceanica) ATGCTGCGAACGGTCCTGCGCCGCCGACTTTTGTTGGGACGTAGCCGCAG CACGCCATCATTAGCAGCACCAGCTTCACTCTTCCGACACCGGCCACCAT CACTCACACCAAGCACACTTGGGTTGTCCCGGGTGCTGCACCCGCAACGC ATATCGTTTGAGAGCTACTTCTCGGCAACGTTTTCGACATTTGACGACTC CTTGCCGCACAGGGACAGCCCCCATCATAAGAAGAAGAAGCGGGCAAGAG ACCCTCTAACGGCCCGTGCAGCCAAGGAGACCCCAGCTCCTGCTTCCGTC GAAGAACTTAAGCAGCACCATCACCCGCCGGCCATTGATAACAGCGGTAT CCTGCAGGAAGGGGAGGACGAACATCGGCCGCCCGCCATCGCCGTGCGCG GGGCGCAGATGAAGGGGGGCAACGTGGTATGGCGGGCCTCCGGGGATGAA GTCAAGCAGGCCAAGCCAGCGCAATGGGAGAAGGTCAGCGCGGAAGAAAA TTTGCGCAGTACCATCAAAGAGAGTAAAGTCGGTCCGTTTGATCCGAACT TTAAGTCGTTAGGTGTCATCGAGCCGGACAAAGACCTAGATCTGCAGCTC ATGATCTCAAACTACACCGTACCGGCGCTCGCCACCGGCCTTCGAGATCG AGAGGAAACTCTGCAACTCTGTGCCCATCTCCTGGCCAACGGCGACCTGG AGCAGCTTGAACGCGTGCTCCATCCTTATCAAGCAGGCCTCATCACGCGA CGCCGACGGAAAACACGCAGTTTGGACTTGGCTGGAGGTTTGACCTCCAA GCATCTGAACATGCTGCGGAAGTATCTGCAGCGCTCTCCGCGGCAATTAA CTCGGGCGGTGTCCCTACGCGCATCTGTCGTGATCCCTCTCTGCAATGTG AATGGTGTGGCCTCTGTGCTCTTTGAGCGACGCTCTAGCTTGGTCCGCTC TTTCAAGAACCAAGTCTGTTTCCCTGGTGGTATGGTGGAAGAGTCTTTAG ATGTAAATATTATTGAGACATCGTTACGAGAGATGGAAGAAGAGATTGGG TTCCCGGCTAGATCGGTGGATGTGCTGGGGGTCCTGCGCTGTGACTGGTC GGAAGTGCACAAAATTACAGGTATCGGTGTCACGCCCGTCGTCGGCTTCT TGGGCGATTTGACCAAGCGCGAGCTGTCCCCGAATCCAGACGAGGTAGCA GAATGCTTTACGATTCCCTTGGCAACGCTCTTGGACGAGGAGCACTGGAG TTATGAGGAGGAGAAGGGCACGGTGGTGTTTGTCGGTGGGCCCCACGTAA TTTGGGGCCTCACGGCCCATTTACTTCTTATCTTCATGAAAGACATTTTG AAGCGGTATAAGATTCGTGTGTAA back to top
|