NO05G04430.1, NO05G04430.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G04430.1
Unique NameNO05G04430.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1617
Alignment locationchr5:1147026..1149011 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1147026..1149011 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO05G04430.1 vs.
Match: EWM27968.1 (nudix hydrolase 3 [Nannochloropsis gaditana])

HSP 1 Score: 471.5 bits (1212), Expect = 3.000e-129
Identity = 234/257 (91.05%), Postives = 245/257 (95.33%), Query Frame = 0
Query:  201 MISNYTVPALATGLRDREETLQLCAHLLANGDLEQLERVLHPYQAGLITRRRRKTRSLDLAGGLTSKHLNMLRKYLQRSPRQLTRAVSLRASVVIPLCNVNGVASVLFERRSSLVRSFKNQVCFPGGMVEESLDVNIIETSLREMEEEIGFPARSVDVLGVLRCDWSEVHKITGIGVTPVVGFLGDLTKRELSPNPDEVAECFTIPLATLLDEEHWSYEEEKGTVVFVGGPHVIWGLTAHLLLIFMKDILKRYKIRV 458
            MI+NYT+PALA GLRDREETLQ CA LL +G+LEQLERVLHPYQA LITRRRRKTRSLDLAGGLTSKHLNMLRKYLQRSPRQLTRAVSLRASVVIPLCNVNGVASVLFERRS  VRSFK+QVCFPGGMVEESLDVNIIETSLREMEEEIGFPARSVDVLGVLRCDWSEVHKITGIGVTPVVGFLGDLT++ELSPNP EVAECFTIPLATLLD EHW+ EEEKGTVVFVGGPHVIWGLTAHLL IF+KDIL RYK++V
Sbjct:    1 MITNYTLPALAAGLRDREETLQFCARLLEDGNLEQLERVLHPYQAELITRRRRKTRSLDLAGGLTSKHLNMLRKYLQRSPRQLTRAVSLRASVVIPLCNVNGVASVLFERRSPFVRSFKSQVCFPGGMVEESLDVNIIETSLREMEEEIGFPARSVDVLGVLRCDWSEVHKITGIGVTPVVGFLGDLTEKELSPNPKEVAECFTIPLATLLDVEHWNREEEKGTVVFVGGPHVIWGLTAHLLDIFLKDILMRYKVQV 257          
The following BLAST results are available for this feature:
BLAST of NO05G04430.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27968.13.000e-12991.05nudix hydrolase 3 [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G04430NO05G04430Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G04430.1NO05G04430.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G04430.1.cds1NO05G04430.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G04430.1.cds2NO05G04430.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G04430.1 ID=NO05G04430.1|Name=NO05G04430.1|organism=Nannochloropsis oceanica|type=mRNA|length=1617bp
ACACAGTCAAATAATCGTCAACCATCATGCTGCGAACGGTCCTGCGCCGC
CGACTTTTGTTGGGACGTAGCCGCAGCACGCCATCATTAGCAGCACCAGC
TTCACTCTTCCGACACCGGCCACCATCACTCACACCAAGCACACTTGGGT
TGTCCCGGGTGCTGCACCCGCAACGCATATCGTTTGAGAGCTACTTCTCG
GCAACGTTTTCGACATTTGACGACTCCTTGCCGCACAGGGACAGCCCCCA
TCATAAGAAGAAGAAGCGGGCAAGAGACCCTCTAACGGCCCGTGCAGCCA
AGGAGACCCCAGCTCCTGCTTCCGTCGAAGAACTTAAGCAGCACCATCAC
CCGCCGGCCATTGATAACAGCGGTATCCTGCAGGAAGGGGAGGACGAACA
TCGGCCGCCCGCCATCGCCGTGCGCGGGGCGCAGATGAAGGGGGGCAACG
TGGTATGGCGGGCCTCCGGGGATGAAGTCAAGCAGGCCAAGCCAGCGCAA
TGGGAGAAGGTCAGCGCGGAAGAAAATTTGCGCAGTACCATCAAAGAGAG
TAAAGTCGGTCCGTTTGATCCGAACTTTAAGTCGTTAGGTGTCATCGAGC
CGGACAAAGACCTAGATCTGCAGCTCATGATCTCAAACTACACCGTACCG
GCGCTCGCCACCGGCCTTCGAGATCGAGAGGAAACTCTGCAACTCTGTGC
CCATCTCCTGGCCAACGGCGACCTGGAGCAGCTTGAACGCGTGCTCCATC
CTTATCAAGCAGGCCTCATCACGCGACGCCGACGGAAAACACGCAGTTTG
GACTTGGCTGGAGGTTTGACCTCCAAGCATCTGAACATGCTGCGGAAGTA
TCTGCAGCGCTCTCCGCGGCAATTAACTCGGGCGGTGTCCCTACGCGCAT
CTGTCGTGATCCCTCTCTGCAATGTGAATGGTGTGGCCTCTGTGCTCTTT
GAGCGACGCTCTAGCTTGGTCCGCTCTTTCAAGAACCAAGTCTGTTTCCC
TGGTGGTATGGTGGAAGAGTCTTTAGATGTAAATATTATTGAGACATCGT
TACGAGAGATGGAAGAAGAGATTGGGTTCCCGGCTAGATCGGTGGATGTG
CTGGGGGTCCTGCGCTGTGACTGGTCGGAAGTGCACAAAATTACAGGTAT
CGGTGTCACGCCCGTCGTCGGCTTCTTGGGCGATTTGACCAAGCGCGAGC
TGTCCCCGAATCCAGACGAGGTAGCAGAATGCTTTACGATTCCCTTGGCA
ACGCTCTTGGACGAGGAGCACTGGAGTTATGAGGAGGAGAAGGGCACGGT
GGTGTTTGTCGGTGGGCCCCACGTAATTTGGGGCCTCACGGCCCATTTAC
TTCTTATCTTCATGAAAGACATTTTGAAGCGGTATAAGATTCGTGTGTAA
TAGCAAATGAAAGGATGTGGGTCAAAGATCGTTAGTGGGGTGGACATGGA
AACAAATGTTGTGTTGACATGTGCATTGCATTATTACCTTGGATAGGGTC
CTGATATACCGGTGTTCGGCGAGACAGGCAGAATTATAAAGTACCATGCA
CAAAATCAAATTTTCGAAATCGCTTTGATTAAAAGAACCCACAAAACCAC
TCAAGATGAGAAGGGCA
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protein sequence of NO05G04430.1

>NO05G04430.1-protein ID=NO05G04430.1-protein|Name=NO05G04430.1|organism=Nannochloropsis oceanica|type=polypeptide|length=458bp
MLRTVLRRRLLLGRSRSTPSLAAPASLFRHRPPSLTPSTLGLSRVLHPQR
ISFESYFSATFSTFDDSLPHRDSPHHKKKKRARDPLTARAAKETPAPASV
EELKQHHHPPAIDNSGILQEGEDEHRPPAIAVRGAQMKGGNVVWRASGDE
VKQAKPAQWEKVSAEENLRSTIKESKVGPFDPNFKSLGVIEPDKDLDLQL
MISNYTVPALATGLRDREETLQLCAHLLANGDLEQLERVLHPYQAGLITR
RRRKTRSLDLAGGLTSKHLNMLRKYLQRSPRQLTRAVSLRASVVIPLCNV
NGVASVLFERRSSLVRSFKNQVCFPGGMVEESLDVNIIETSLREMEEEIG
FPARSVDVLGVLRCDWSEVHKITGIGVTPVVGFLGDLTKRELSPNPDEVA
ECFTIPLATLLDEEHWSYEEEKGTVVFVGGPHVIWGLTAHLLLIFMKDIL
KRYKIRV*
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mRNA from alignment at chr5:1147026..1149011+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G04430.1 ID=NO05G04430.1|Name=NO05G04430.1|organism=Nannochloropsis oceanica|type=mRNA|length=1986bp|location=Sequence derived from alignment at chr5:1147026..1149011+ (Nannochloropsis oceanica)
ACACAGTCAAATAATCGTCAACCATCATGCTGCGAACGGTCCTGCGCCGC CGACTTTTGTTGGGACGTAGCCGCAGCACGCCATCATTAGCAGCACCAGC TTCACTCTTCCGACACCGGCCACCATCACTCACACCAAGCACACTTGGGT TGTCCCGGGTGCTGCACCCGCAACGCATATCGTTTGAGAGCTACTTCTCG GCAACGTTTTCGACATTTGACGACTCCTTGCCGCACAGGGACAGCCCCCA TCATAAGAAGAAGAAGCGGGCAAGAGACCCTCTAACGGCCCGTGCAGCCA AGGAGACCCCAGCTCCTGCTTCCGTCGAAGAACTTAAGCAGCACCATCAC CCGCCGGCCATTGATAACAGCGGTATCCTGCAGGAAGGGGAGGACGAACA TCGGCCGCCCGCCATCGCCGTGCGCGGGGCGCAGATGAAGGGGGGCAACG TGGTATGGCGGGCCTCCGGGGATGAAGTCAAGCAGGCCAAGCCAGCGCAA TGGGAGAAGGTCAGCGCGGAAGAAAATTTGCGCAGTACCATCAAAGAGAG TAAAGTCGGTCCGTTTGATCCGAACTTTAAGTCGTTAGGTGTCATCGAGC CGGTACGTGAAGAGTTTGGGAACGGGGGGAGGCTGGAGGGACGGAAAGAG TAGCTAAGCGTCGGACCTTGTCACAAGCCAGACGGTGAATGTTTGTATGG TTCTATAAATTTGTGCATGGTTACGATGTATTGCAATCCAGCTTGCCAGC TTCAAACCTAATTGGGGTGGAAGATAGGCTTAATTATGGAATCGAGAGCC CTCCCGGCAGTTTATTCAAGATCGCGTGTGCGCTACTGTCAGTACATCTT AAGGACGAATCTTGTCGTCTGATTTCATGCATCCTTCACATTTTTCCGTA GCTGATCGAGAAGCAGTGCCAAACCAAACACGACACAAAAGCCTCCTGAC TACTTCCATCCCCACAAACAGGACAAAGACCTAGATCTGCAGCTCATGAT CTCAAACTACACCGTACCGGCGCTCGCCACCGGCCTTCGAGATCGAGAGG AAACTCTGCAACTCTGTGCCCATCTCCTGGCCAACGGCGACCTGGAGCAG CTTGAACGCGTGCTCCATCCTTATCAAGCAGGCCTCATCACGCGACGCCG ACGGAAAACACGCAGTTTGGACTTGGCTGGAGGTTTGACCTCCAAGCATC TGAACATGCTGCGGAAGTATCTGCAGCGCTCTCCGCGGCAATTAACTCGG GCGGTGTCCCTACGCGCATCTGTCGTGATCCCTCTCTGCAATGTGAATGG TGTGGCCTCTGTGCTCTTTGAGCGACGCTCTAGCTTGGTCCGCTCTTTCA AGAACCAAGTCTGTTTCCCTGGTGGTATGGTGGAAGAGTCTTTAGATGTA AATATTATTGAGACATCGTTACGAGAGATGGAAGAAGAGATTGGGTTCCC GGCTAGATCGGTGGATGTGCTGGGGGTCCTGCGCTGTGACTGGTCGGAAG TGCACAAAATTACAGGTATCGGTGTCACGCCCGTCGTCGGCTTCTTGGGC GATTTGACCAAGCGCGAGCTGTCCCCGAATCCAGACGAGGTAGCAGAATG CTTTACGATTCCCTTGGCAACGCTCTTGGACGAGGAGCACTGGAGTTATG AGGAGGAGAAGGGCACGGTGGTGTTTGTCGGTGGGCCCCACGTAATTTGG GGCCTCACGGCCCATTTACTTCTTATCTTCATGAAAGACATTTTGAAGCG GTATAAGATTCGTGTGTAATAGCAAATGAAAGGATGTGGGTCAAAGATCG TTAGTGGGGTGGACATGGAAACAAATGTTGTGTTGACATGTGCATTGCAT TATTACCTTGGATAGGGTCCTGATATACCGGTGTTCGGCGAGACAGGCAG AATTATAAAGTACCATGCACAAAATCAAATTTTCGAAATCGCTTTGATTA AAAGAACCCACAAAACCACTCAAGATGAGAAGGGCA
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Coding sequence (CDS) from alignment at chr5:1147026..1149011+

>NO05G04430.1 ID=NO05G04430.1|Name=NO05G04430.1|organism=Nannochloropsis oceanica|type=CDS|length=1374bp|location=Sequence derived from alignment at chr5:1147026..1149011+ (Nannochloropsis oceanica)
ATGCTGCGAACGGTCCTGCGCCGCCGACTTTTGTTGGGACGTAGCCGCAG
CACGCCATCATTAGCAGCACCAGCTTCACTCTTCCGACACCGGCCACCAT
CACTCACACCAAGCACACTTGGGTTGTCCCGGGTGCTGCACCCGCAACGC
ATATCGTTTGAGAGCTACTTCTCGGCAACGTTTTCGACATTTGACGACTC
CTTGCCGCACAGGGACAGCCCCCATCATAAGAAGAAGAAGCGGGCAAGAG
ACCCTCTAACGGCCCGTGCAGCCAAGGAGACCCCAGCTCCTGCTTCCGTC
GAAGAACTTAAGCAGCACCATCACCCGCCGGCCATTGATAACAGCGGTAT
CCTGCAGGAAGGGGAGGACGAACATCGGCCGCCCGCCATCGCCGTGCGCG
GGGCGCAGATGAAGGGGGGCAACGTGGTATGGCGGGCCTCCGGGGATGAA
GTCAAGCAGGCCAAGCCAGCGCAATGGGAGAAGGTCAGCGCGGAAGAAAA
TTTGCGCAGTACCATCAAAGAGAGTAAAGTCGGTCCGTTTGATCCGAACT
TTAAGTCGTTAGGTGTCATCGAGCCGGACAAAGACCTAGATCTGCAGCTC
ATGATCTCAAACTACACCGTACCGGCGCTCGCCACCGGCCTTCGAGATCG
AGAGGAAACTCTGCAACTCTGTGCCCATCTCCTGGCCAACGGCGACCTGG
AGCAGCTTGAACGCGTGCTCCATCCTTATCAAGCAGGCCTCATCACGCGA
CGCCGACGGAAAACACGCAGTTTGGACTTGGCTGGAGGTTTGACCTCCAA
GCATCTGAACATGCTGCGGAAGTATCTGCAGCGCTCTCCGCGGCAATTAA
CTCGGGCGGTGTCCCTACGCGCATCTGTCGTGATCCCTCTCTGCAATGTG
AATGGTGTGGCCTCTGTGCTCTTTGAGCGACGCTCTAGCTTGGTCCGCTC
TTTCAAGAACCAAGTCTGTTTCCCTGGTGGTATGGTGGAAGAGTCTTTAG
ATGTAAATATTATTGAGACATCGTTACGAGAGATGGAAGAAGAGATTGGG
TTCCCGGCTAGATCGGTGGATGTGCTGGGGGTCCTGCGCTGTGACTGGTC
GGAAGTGCACAAAATTACAGGTATCGGTGTCACGCCCGTCGTCGGCTTCT
TGGGCGATTTGACCAAGCGCGAGCTGTCCCCGAATCCAGACGAGGTAGCA
GAATGCTTTACGATTCCCTTGGCAACGCTCTTGGACGAGGAGCACTGGAG
TTATGAGGAGGAGAAGGGCACGGTGGTGTTTGTCGGTGGGCCCCACGTAA
TTTGGGGCCTCACGGCCCATTTACTTCTTATCTTCATGAAAGACATTTTG
AAGCGGTATAAGATTCGTGTGTAA
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Synonyms
Publications