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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr5 | genome | chr5:1107010..1110051 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO05G04310.1 vs.
Match: EWM27939.1 (hypothetical protein Naga_100008g79 [Nannochloropsis gaditana]) HSP 1 Score: 109.4 bits (272), Expect = 4.900e-20 Identity = 72/144 (50.00%), Postives = 92/144 (63.89%), Query Frame = 0
Query: 590 YVGVYSPRSRRGRIARYLDKRTKRNWDMKKRKNKGVYMGRRDLDTMVRVRGRFTKKVTAVVTEAERKEMKNVG-SLAGTTDIE-----------------EGRTEE--EREREEEVKEEVRDFMDTFFDLTSVDSEKEFASIFS 714
+VG YSP SR+ RI R+ +KRTKRNWD KKRK GVYMGR+DLDTMVRVRGRFTKKV V +A+RKE + V SLAG T+ E G +E E++ + E EE+ DF DT DL+ V+ ++E+ +FS
Sbjct: 228 FVGAYSPNSRKRRIERFHEKRTKRNWDPKKRKTTGVYMGRQDLDTMVRVRGRFTKKVARVEQQADRKEERAVTLSLAGMTETEIKANKSKDMHLGMGMEKAGGSEVYWEKDADMEYSEEM-DFSDTLLDLSPVEMDQEYEPMFS 370
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO05G04310.1 ID=NO05G04310.1|Name=NO05G04310.1|organism=Nannochloropsis oceanica|type=mRNA|length=3042bp GCCAAGAGAACAAAAGCGATGTGGATATAACTGCTCTTGCTTGCAATGCA CTCTTCGTTGTTTGTTTGTCCTCCCTCTGCTTGCACCTGCTTCTCTCTCA CACACACATGCTGCACTCCAAAGCTTGTCCTTCCCACAAAAAACATGATG GGCCAGTCGTGCGTGTACACAAAGCTCCCTGCTCCCTCCACCCACGCAAC CGAGAGCCGTTTACAGAGGAAGGAGCTACACCCCAGAGGCTATCTATACA CATAGATTCCTCCACACATATACCAATGCTCCCCTCTCTTCCAACACGTA CACAGGACACCCGCTGCCACACCTAGTGTGTGAGCTTTTAGGTCTGTGTG TCCGTGTGTCTTTGCCAAGAGGAGCTTGCACCGGCAACCGCCCAGTAGAA GTCAAGACGCTGCAACGCTCAACACTAGTGTTTCTACGAAAGACTGCTGC CATCTCGAAGACTCACACGCTCACGTCCATCAAAACATGAGCACAAACAC AAACGAGTTGCCGTGGTGGGCACCCTTAGGCTCGCCTATGTTTTCATCAG GGGCCACTCCTGCTGCAGCTTGCTCCCGCGACACGATGACGATGACCGAG ACTACTTCTAAGATGGAGCCCAGCGTACCATCGTCGCCCTGTGCCAGATC TGTCACATTCCCGGAGTGCAACAGCCCGCAGCACCGTCATGGGGACGAGG ATATGGCACGACGCATGCGGCAGGTGGATGACTTAGAACAGCGCGGCTTG CTAGACACGTATCAGGGTTATGTGCTTAAAGACATGATCTCTCATCAGGA GCACGCAGAGGACGACGCGATTTTGAACGAGGCGTGGGCAAAGCACGATG CTGGGGATGTGACAGCGCTAGTGGCGTTGGCGAATGAGGGAATCATGCAG GAGACCCCAAGCATGGACTTATTGTTGGAGGACCTGGACTTGTGTGATTT TGATTTTTCTAAGGTGAATGTAGAAGAGGCCGTTCTTGGGACGACGAGGA CGGCAAGTCCTCCTCCGCCTAACCCGATGACGACCAGTAGTGAAATGCCC GAGACTCCCCAAAATGAAGTTCTTGACGATTCCCTACCTTTGCATCCCCC CTGTCCTTCGGCAGACTCCTCGACTGCCACTTCTGTGGCCCCCCTGATGC AAATGCCACCACAAACTACAAGCATGTCTTCGCAGCAGCAGATACTGCAG CAGCAGCAGCATCAGCTGCAGCTGTTACAGCAGCAGCTCATGCAACAGCA GCAGCAGAGTGCTGCCTCCTCTTCCTCGTCCTCTTCGCTCTTGCCGCCGC CATCACTGCTGCAGCAGCAGCAATTCGCTAAGGTTCTTCATCAGCTTCAA CCGCAGCATCAGCCGCAAATGACTCTCCTCCCCACCGGAACAACCGGGGC CACTGTCTACCCGCCCATGATGGCTGCATGGGGACAACAACTTCTTTCCA CTGCCCCCCCTCAACAAATCATGTGGACTGCTGGAACCTCCGGCCTGTCC TTGGCCCCTATTCAAGCCTACCCCACCAACCCGCTGTTGGCAGGACAGTC TCGACAGCAGGGTTCTACTTCTACTAGTGGTCCGGCAACAAGCAGCAGCG GCAGCGGCAGCAGCAGCAGGAGCGACACCTCTGCTCCATTGTCTCAGGAA GCCCTGCAACAATATTACTTGACCTTACTCACTACTAATGCCTCCGTCGG GAGCAGCAACTGCAGCAGCAGCAGCAGCAGCAACAACAACAACAACTATA CCAAAATTAATAACAACAGCCACAGCAGCAACAACAGCCACACCAGAAAC AGCAGCAGCAGCAACAGCAGCAGTATTAATACTTCTTCCACTCCTGTTCC TACTCTTAGTACTCTTACTATTCCTACTGCTATTACAATTGCTGCTGCTG CTTCCGCCGCAGCATCGTCCGTGGGTTTAGTGCCCGGCACGCGCACCCAT CAACATTATATGGCCAAACTGATTGAAGCAGCCGTAGCCGCTCAACCCTG GAATGCACGCCCTCCCTCCTCCACCAAAATCACCACTTCCTCCTGCCCCT CCTCCGCCTCTAGCTCCGCCCCCTCCTCCTCCACCACCACCACCGCGGCA ATCGCCACCATTCCAACCCCCGCAGCACTCTCATCCTCAGCAGTAGCAGC AGCAGCTAACCGTATGAGCACGGCTTCTTCTTTTCCACCAAAGCTCTCTG TTGCTACCAGTAAAGACGAAGGCGAAGGCCACACACATCAGCTGCATCAG CGGTATGTGGGTGTCTACAGCCCTAGATCTCGCAGAGGACGCATAGCCCG ATATCTGGATAAGAGGACAAAGAGAAACTGGGACATGAAGAAGAGGAAGA ACAAGGGGGTGTATATGGGGAGAAGGGATTTGGACACTATGGTTAGGGTG AGGGGGAGGTTTACCAAGAAAGTGACGGCGGTGGTGACGGAGGCAGAGAG GAAGGAGATGAAAAACGTGGGATCTTTGGCAGGGACCACAGATATTGAGG AGGGACGGACGGAGGAGGAAAGGGAAAGGGAAGAAGAGGTGAAGGAGGAG GTGAGGGATTTTATGGATACGTTCTTTGACTTGACGTCGGTGGATTCGGA AAAGGAGTTTGCGTCTATCTTTTCATCTCAGCCTGTGGGGGAGATGACCG GACCGACGGGTGCCGGAGGGATAGGGATGTCGTTTGATATTTCATTTTGA GGGAAGGCGTGTGAAAAGAGGTTTGTGAATGTAAGACTGATGCGTGCGTG CATTTACGTGCATGTCTGTGTTTTTACTTGTGGTGCAAGCGAAGCCAGCA AATGTGCATGAGTGCGTGCGTATCGGGTTAAATGGATGAATGGATGGATG GAAGGAAGGAGTAACTACTATAAATATACAAACCTACCATGCATGATTTG TGAACTGAACGTGTGGATGTCAACCATATTGAGAATGCATTTTTATTTGT TTTATTTGTTATGTCAACGAATGCCAGGAGGCACAAACGAGAAGGGTATG ACGGATTGAAACAAAACAGACGAACAAACCACCAAATACAAC back to topprotein sequence of NO05G04310.1 >NO05G04310.1-protein ID=NO05G04310.1-protein|Name=NO05G04310.1|organism=Nannochloropsis oceanica|type=polypeptide|length=738bp MSTNTNELPWWAPLGSPMFSSGATPAAACSRDTMTMTETTSKMEPSVPSS PCARSVTFPECNSPQHRHGDEDMARRMRQVDDLEQRGLLDTYQGYVLKDM ISHQEHAEDDAILNEAWAKHDAGDVTALVALANEGIMQETPSMDLLLEDL DLCDFDFSKVNVEEAVLGTTRTASPPPPNPMTTSSEMPETPQNEVLDDSL PLHPPCPSADSSTATSVAPLMQMPPQTTSMSSQQQILQQQQHQLQLLQQQ LMQQQQQSAASSSSSSSLLPPPSLLQQQQFAKVLHQLQPQHQPQMTLLPT GTTGATVYPPMMAAWGQQLLSTAPPQQIMWTAGTSGLSLAPIQAYPTNPL LAGQSRQQGSTSTSGPATSSSGSGSSSRSDTSAPLSQEALQQYYLTLLTT NASVGSSNCSSSSSSNNNNNYTKINNNSHSSNNSHTRNSSSSNSSSINTS STPVPTLSTLTIPTAITIAAAASAAASSVGLVPGTRTHQHYMAKLIEAAV AAQPWNARPPSSTKITTSSCPSSASSSAPSSSTTTTAAIATIPTPAALSS SAVAAAANRMSTASSFPPKLSVATSKDEGEGHTHQLHQRYVGVYSPRSRR GRIARYLDKRTKRNWDMKKRKNKGVYMGRRDLDTMVRVRGRFTKKVTAVV TEAERKEMKNVGSLAGTTDIEEGRTEEEREREEEVKEEVRDFMDTFFDLT SVDSEKEFASIFSSQPVGEMTGPTGAGGIGMSFDISF* back to topmRNA from alignment at chr5:1107010..1110051- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO05G04310.1 ID=NO05G04310.1|Name=NO05G04310.1|organism=Nannochloropsis oceanica|type=mRNA|length=3042bp|location=Sequence derived from alignment at chr5:1107010..1110051- (Nannochloropsis oceanica) GCCAAGAGAACAAAAGCGATGTGGATATAACTGCTCTTGCTTGCAATGCA
CTCTTCGTTGTTTGTTTGTCCTCCCTCTGCTTGCACCTGCTTCTCTCTCA
CACACACATGCTGCACTCCAAAGCTTGTCCTTCCCACAAAAAACATGATG
GGCCAGTCGTGCGTGTACACAAAGCTCCCTGCTCCCTCCACCCACGCAAC
CGAGAGCCGTTTACAGAGGAAGGAGCTACACCCCAGAGGCTATCTATACA
CATAGATTCCTCCACACATATACCAATGCTCCCCTCTCTTCCAACACGTA
CACAGGACACCCGCTGCCACACCTAGTGTGTGAGCTTTTAGGTCTGTGTG
TCCGTGTGTCTTTGCCAAGAGGAGCTTGCACCGGCAACCGCCCAGTAGAA
GTCAAGACGCTGCAACGCTCAACACTAGTGTTTCTACGAAAGACTGCTGC
CATCTCGAAGACTCACACGCTCACGTCCATCAAAACATGAGCACAAACAC
AAACGAGTTGCCGTGGTGGGCACCCTTAGGCTCGCCTATGTTTTCATCAG
GGGCCACTCCTGCTGCAGCTTGCTCCCGCGACACGATGACGATGACCGAG
ACTACTTCTAAGATGGAGCCCAGCGTACCATCGTCGCCCTGTGCCAGATC
TGTCACATTCCCGGAGTGCAACAGCCCGCAGCACCGTCATGGGGACGAGG
ATATGGCACGACGCATGCGGCAGGTGGATGACTTAGAACAGCGCGGCTTG
CTAGACACGTATCAGGGTTATGTGCTTAAAGACATGATCTCTCATCAGGA
GCACGCAGAGGACGACGCGATTTTGAACGAGGCGTGGGCAAAGCACGATG
CTGGGGATGTGACAGCGCTAGTGGCGTTGGCGAATGAGGGAATCATGCAG
GAGACCCCAAGCATGGACTTATTGTTGGAGGACCTGGACTTGTGTGATTT
TGATTTTTCTAAGGTGAATGTAGAAGAGGCCGTTCTTGGGACGACGAGGA
CGGCAAGTCCTCCTCCGCCTAACCCGATGACGACCAGTAGTGAAATGCCC
GAGACTCCCCAAAATGAAGTTCTTGACGATTCCCTACCTTTGCATCCCCC
CTGTCCTTCGGCAGACTCCTCGACTGCCACTTCTGTGGCCCCCCTGATGC
AAATGCCACCACAAACTACAAGCATGTCTTCGCAGCAGCAGATACTGCAG
CAGCAGCAGCATCAGCTGCAGCTGTTACAGCAGCAGCTCATGCAACAGCA
GCAGCAGAGTGCTGCCTCCTCTTCCTCGTCCTCTTCGCTCTTGCCGCCGC
CATCACTGCTGCAGCAGCAGCAATTCGCTAAGGTTCTTCATCAGCTTCAA
CCGCAGCATCAGCCGCAAATGACTCTCCTCCCCACCGGAACAACCGGGGC
CACTGTCTACCCGCCCATGATGGCTGCATGGGGACAACAACTTCTTTCCA
CTGCCCCCCCTCAACAAATCATGTGGACTGCTGGAACCTCCGGCCTGTCC
TTGGCCCCTATTCAAGCCTACCCCACCAACCCGCTGTTGGCAGGACAGTC
TCGACAGCAGGGTTCTACTTCTACTAGTGGTCCGGCAACAAGCAGCAGCG
GCAGCGGCAGCAGCAGCAGGAGCGACACCTCTGCTCCATTGTCTCAGGAA
GCCCTGCAACAATATTACTTGACCTTACTCACTACTAATGCCTCCGTCGG
GAGCAGCAACTGCAGCAGCAGCAGCAGCAGCAACAACAACAACAACTATA
CCAAAATTAATAACAACAGCCACAGCAGCAACAACAGCCACACCAGAAAC
AGCAGCAGCAGCAACAGCAGCAGTATTAATACTTCTTCCACTCCTGTTCC
TACTCTTAGTACTCTTACTATTCCTACTGCTATTACAATTGCTGCTGCTG
CTTCCGCCGCAGCATCGTCCGTGGGTTTAGTGCCCGGCACGCGCACCCAT
CAACATTATATGGCCAAACTGATTGAAGCAGCCGTAGCCGCTCAACCCTG
GAATGCACGCCCTCCCTCCTCCACCAAAATCACCACTTCCTCCTGCCCCT
CCTCCGCCTCTAGCTCCGCCCCCTCCTCCTCCACCACCACCACCGCGGCA
ATCGCCACCATTCCAACCCCCGCAGCACTCTCATCCTCAGCAGTAGCAGC
AGCAGCTAACCGTATGAGCACGGCTTCTTCTTTTCCACCAAAGCTCTCTG
TTGCTACCAGTAAAGACGAAGGCGAAGGCCACACACATCAGCTGCATCAG
CGGTATGTGGGTGTCTACAGCCCTAGATCTCGCAGAGGACGCATAGCCCG
ATATCTGGATAAGAGGACAAAGAGAAACTGGGACATGAAGAAGAGGAAGA
ACAAGGGGGTGTATATGGGGAGAAGGGATTTGGACACTATGGTTAGGGTG
AGGGGGAGGTTTACCAAGAAAGTGACGGCGGTGGTGACGGAGGCAGAGAG
GAAGGAGATGAAAAACGTGGGATCTTTGGCAGGGACCACAGATATTGAGG
AGGGACGGACGGAGGAGGAAAGGGAAAGGGAAGAAGAGGTGAAGGAGGAG
GTGAGGGATTTTATGGATACGTTCTTTGACTTGACGTCGGTGGATTCGGA
AAAGGAGTTTGCGTCTATCTTTTCATCTCAGCCTGTGGGGGAGATGACCG
GACCGACGGGTGCCGGAGGGATAGGGATGTCGTTTGATATTTCATTTTGA
GGGAAGGCGTGTGAAAAGAGGTTTGTGAATGTAAGACTGATGCGTGCGTG
CATTTACGTGCATGTCTGTGTTTTTACTTGTGGTGCAAGCGAAGCCAGCA
AATGTGCATGAGTGCGTGCGTATCGGGTTAAATGGATGAATGGATGGATG
GAAGGAAGGAGTAACTACTATAAATATACAAACCTACCATGCATGATTTG
TGAACTGAACGTGTGGATGTCAACCATATTGAGAATGCATTTTTATTTGT
TTTATTTGTTATGTCAACGAATGCCAGGAGGCACAAACGAGAAGGGTATG
ACGGATTGAAACAAAACAGACGAACAAACCACCAAATACAAC back to topCoding sequence (CDS) from alignment at chr5:1107010..1110051- >NO05G04310.1 ID=NO05G04310.1|Name=NO05G04310.1|organism=Nannochloropsis oceanica|type=CDS|length=2214bp|location=Sequence derived from alignment at chr5:1107010..1110051- (Nannochloropsis oceanica) ATGAGCACAAACACAAACGAGTTGCCGTGGTGGGCACCCTTAGGCTCGCC TATGTTTTCATCAGGGGCCACTCCTGCTGCAGCTTGCTCCCGCGACACGA TGACGATGACCGAGACTACTTCTAAGATGGAGCCCAGCGTACCATCGTCG CCCTGTGCCAGATCTGTCACATTCCCGGAGTGCAACAGCCCGCAGCACCG TCATGGGGACGAGGATATGGCACGACGCATGCGGCAGGTGGATGACTTAG AACAGCGCGGCTTGCTAGACACGTATCAGGGTTATGTGCTTAAAGACATG ATCTCTCATCAGGAGCACGCAGAGGACGACGCGATTTTGAACGAGGCGTG GGCAAAGCACGATGCTGGGGATGTGACAGCGCTAGTGGCGTTGGCGAATG AGGGAATCATGCAGGAGACCCCAAGCATGGACTTATTGTTGGAGGACCTG GACTTGTGTGATTTTGATTTTTCTAAGGTGAATGTAGAAGAGGCCGTTCT TGGGACGACGAGGACGGCAAGTCCTCCTCCGCCTAACCCGATGACGACCA GTAGTGAAATGCCCGAGACTCCCCAAAATGAAGTTCTTGACGATTCCCTA CCTTTGCATCCCCCCTGTCCTTCGGCAGACTCCTCGACTGCCACTTCTGT GGCCCCCCTGATGCAAATGCCACCACAAACTACAAGCATGTCTTCGCAGC AGCAGATACTGCAGCAGCAGCAGCATCAGCTGCAGCTGTTACAGCAGCAG CTCATGCAACAGCAGCAGCAGAGTGCTGCCTCCTCTTCCTCGTCCTCTTC GCTCTTGCCGCCGCCATCACTGCTGCAGCAGCAGCAATTCGCTAAGGTTC TTCATCAGCTTCAACCGCAGCATCAGCCGCAAATGACTCTCCTCCCCACC GGAACAACCGGGGCCACTGTCTACCCGCCCATGATGGCTGCATGGGGACA ACAACTTCTTTCCACTGCCCCCCCTCAACAAATCATGTGGACTGCTGGAA CCTCCGGCCTGTCCTTGGCCCCTATTCAAGCCTACCCCACCAACCCGCTG TTGGCAGGACAGTCTCGACAGCAGGGTTCTACTTCTACTAGTGGTCCGGC AACAAGCAGCAGCGGCAGCGGCAGCAGCAGCAGGAGCGACACCTCTGCTC CATTGTCTCAGGAAGCCCTGCAACAATATTACTTGACCTTACTCACTACT AATGCCTCCGTCGGGAGCAGCAACTGCAGCAGCAGCAGCAGCAGCAACAA CAACAACAACTATACCAAAATTAATAACAACAGCCACAGCAGCAACAACA GCCACACCAGAAACAGCAGCAGCAGCAACAGCAGCAGTATTAATACTTCT TCCACTCCTGTTCCTACTCTTAGTACTCTTACTATTCCTACTGCTATTAC AATTGCTGCTGCTGCTTCCGCCGCAGCATCGTCCGTGGGTTTAGTGCCCG GCACGCGCACCCATCAACATTATATGGCCAAACTGATTGAAGCAGCCGTA GCCGCTCAACCCTGGAATGCACGCCCTCCCTCCTCCACCAAAATCACCAC TTCCTCCTGCCCCTCCTCCGCCTCTAGCTCCGCCCCCTCCTCCTCCACCA CCACCACCGCGGCAATCGCCACCATTCCAACCCCCGCAGCACTCTCATCC TCAGCAGTAGCAGCAGCAGCTAACCGTATGAGCACGGCTTCTTCTTTTCC ACCAAAGCTCTCTGTTGCTACCAGTAAAGACGAAGGCGAAGGCCACACAC ATCAGCTGCATCAGCGGTATGTGGGTGTCTACAGCCCTAGATCTCGCAGA GGACGCATAGCCCGATATCTGGATAAGAGGACAAAGAGAAACTGGGACAT GAAGAAGAGGAAGAACAAGGGGGTGTATATGGGGAGAAGGGATTTGGACA CTATGGTTAGGGTGAGGGGGAGGTTTACCAAGAAAGTGACGGCGGTGGTG ACGGAGGCAGAGAGGAAGGAGATGAAAAACGTGGGATCTTTGGCAGGGAC CACAGATATTGAGGAGGGACGGACGGAGGAGGAAAGGGAAAGGGAAGAAG AGGTGAAGGAGGAGGTGAGGGATTTTATGGATACGTTCTTTGACTTGACG TCGGTGGATTCGGAAAAGGAGTTTGCGTCTATCTTTTCATCTCAGCCTGT GGGGGAGATGACCGGACCGACGGGTGCCGGAGGGATAGGGATGTCGTTTG ATATTTCATTTTGA back to top
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