NO05G04310.1, NO05G04310.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G04310.1
Unique NameNO05G04310.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3042
Alignment locationchr5:1107010..1110051 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1107010..1110051 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO05G04310.1 vs.
Match: EWM27939.1 (hypothetical protein Naga_100008g79 [Nannochloropsis gaditana])

HSP 1 Score: 109.4 bits (272), Expect = 4.900e-20
Identity = 72/144 (50.00%), Postives = 92/144 (63.89%), Query Frame = 0
Query:  590 YVGVYSPRSRRGRIARYLDKRTKRNWDMKKRKNKGVYMGRRDLDTMVRVRGRFTKKVTAVVTEAERKEMKNVG-SLAGTTDIE-----------------EGRTEE--EREREEEVKEEVRDFMDTFFDLTSVDSEKEFASIFS 714
            +VG YSP SR+ RI R+ +KRTKRNWD KKRK  GVYMGR+DLDTMVRVRGRFTKKV  V  +A+RKE + V  SLAG T+ E                  G +E   E++ + E  EE+ DF DT  DL+ V+ ++E+  +FS
Sbjct:  228 FVGAYSPNSRKRRIERFHEKRTKRNWDPKKRKTTGVYMGRQDLDTMVRVRGRFTKKVARVEQQADRKEERAVTLSLAGMTETEIKANKSKDMHLGMGMEKAGGSEVYWEKDADMEYSEEM-DFSDTLLDLSPVEMDQEYEPMFS 370          
The following BLAST results are available for this feature:
BLAST of NO05G04310.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27939.14.900e-2050.00hypothetical protein Naga_100008g79 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G04310NO05G04310Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G04310.1NO05G04310.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G04310.1.cds1NO05G04310.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G04310.1 ID=NO05G04310.1|Name=NO05G04310.1|organism=Nannochloropsis oceanica|type=mRNA|length=3042bp
GCCAAGAGAACAAAAGCGATGTGGATATAACTGCTCTTGCTTGCAATGCA
CTCTTCGTTGTTTGTTTGTCCTCCCTCTGCTTGCACCTGCTTCTCTCTCA
CACACACATGCTGCACTCCAAAGCTTGTCCTTCCCACAAAAAACATGATG
GGCCAGTCGTGCGTGTACACAAAGCTCCCTGCTCCCTCCACCCACGCAAC
CGAGAGCCGTTTACAGAGGAAGGAGCTACACCCCAGAGGCTATCTATACA
CATAGATTCCTCCACACATATACCAATGCTCCCCTCTCTTCCAACACGTA
CACAGGACACCCGCTGCCACACCTAGTGTGTGAGCTTTTAGGTCTGTGTG
TCCGTGTGTCTTTGCCAAGAGGAGCTTGCACCGGCAACCGCCCAGTAGAA
GTCAAGACGCTGCAACGCTCAACACTAGTGTTTCTACGAAAGACTGCTGC
CATCTCGAAGACTCACACGCTCACGTCCATCAAAACATGAGCACAAACAC
AAACGAGTTGCCGTGGTGGGCACCCTTAGGCTCGCCTATGTTTTCATCAG
GGGCCACTCCTGCTGCAGCTTGCTCCCGCGACACGATGACGATGACCGAG
ACTACTTCTAAGATGGAGCCCAGCGTACCATCGTCGCCCTGTGCCAGATC
TGTCACATTCCCGGAGTGCAACAGCCCGCAGCACCGTCATGGGGACGAGG
ATATGGCACGACGCATGCGGCAGGTGGATGACTTAGAACAGCGCGGCTTG
CTAGACACGTATCAGGGTTATGTGCTTAAAGACATGATCTCTCATCAGGA
GCACGCAGAGGACGACGCGATTTTGAACGAGGCGTGGGCAAAGCACGATG
CTGGGGATGTGACAGCGCTAGTGGCGTTGGCGAATGAGGGAATCATGCAG
GAGACCCCAAGCATGGACTTATTGTTGGAGGACCTGGACTTGTGTGATTT
TGATTTTTCTAAGGTGAATGTAGAAGAGGCCGTTCTTGGGACGACGAGGA
CGGCAAGTCCTCCTCCGCCTAACCCGATGACGACCAGTAGTGAAATGCCC
GAGACTCCCCAAAATGAAGTTCTTGACGATTCCCTACCTTTGCATCCCCC
CTGTCCTTCGGCAGACTCCTCGACTGCCACTTCTGTGGCCCCCCTGATGC
AAATGCCACCACAAACTACAAGCATGTCTTCGCAGCAGCAGATACTGCAG
CAGCAGCAGCATCAGCTGCAGCTGTTACAGCAGCAGCTCATGCAACAGCA
GCAGCAGAGTGCTGCCTCCTCTTCCTCGTCCTCTTCGCTCTTGCCGCCGC
CATCACTGCTGCAGCAGCAGCAATTCGCTAAGGTTCTTCATCAGCTTCAA
CCGCAGCATCAGCCGCAAATGACTCTCCTCCCCACCGGAACAACCGGGGC
CACTGTCTACCCGCCCATGATGGCTGCATGGGGACAACAACTTCTTTCCA
CTGCCCCCCCTCAACAAATCATGTGGACTGCTGGAACCTCCGGCCTGTCC
TTGGCCCCTATTCAAGCCTACCCCACCAACCCGCTGTTGGCAGGACAGTC
TCGACAGCAGGGTTCTACTTCTACTAGTGGTCCGGCAACAAGCAGCAGCG
GCAGCGGCAGCAGCAGCAGGAGCGACACCTCTGCTCCATTGTCTCAGGAA
GCCCTGCAACAATATTACTTGACCTTACTCACTACTAATGCCTCCGTCGG
GAGCAGCAACTGCAGCAGCAGCAGCAGCAGCAACAACAACAACAACTATA
CCAAAATTAATAACAACAGCCACAGCAGCAACAACAGCCACACCAGAAAC
AGCAGCAGCAGCAACAGCAGCAGTATTAATACTTCTTCCACTCCTGTTCC
TACTCTTAGTACTCTTACTATTCCTACTGCTATTACAATTGCTGCTGCTG
CTTCCGCCGCAGCATCGTCCGTGGGTTTAGTGCCCGGCACGCGCACCCAT
CAACATTATATGGCCAAACTGATTGAAGCAGCCGTAGCCGCTCAACCCTG
GAATGCACGCCCTCCCTCCTCCACCAAAATCACCACTTCCTCCTGCCCCT
CCTCCGCCTCTAGCTCCGCCCCCTCCTCCTCCACCACCACCACCGCGGCA
ATCGCCACCATTCCAACCCCCGCAGCACTCTCATCCTCAGCAGTAGCAGC
AGCAGCTAACCGTATGAGCACGGCTTCTTCTTTTCCACCAAAGCTCTCTG
TTGCTACCAGTAAAGACGAAGGCGAAGGCCACACACATCAGCTGCATCAG
CGGTATGTGGGTGTCTACAGCCCTAGATCTCGCAGAGGACGCATAGCCCG
ATATCTGGATAAGAGGACAAAGAGAAACTGGGACATGAAGAAGAGGAAGA
ACAAGGGGGTGTATATGGGGAGAAGGGATTTGGACACTATGGTTAGGGTG
AGGGGGAGGTTTACCAAGAAAGTGACGGCGGTGGTGACGGAGGCAGAGAG
GAAGGAGATGAAAAACGTGGGATCTTTGGCAGGGACCACAGATATTGAGG
AGGGACGGACGGAGGAGGAAAGGGAAAGGGAAGAAGAGGTGAAGGAGGAG
GTGAGGGATTTTATGGATACGTTCTTTGACTTGACGTCGGTGGATTCGGA
AAAGGAGTTTGCGTCTATCTTTTCATCTCAGCCTGTGGGGGAGATGACCG
GACCGACGGGTGCCGGAGGGATAGGGATGTCGTTTGATATTTCATTTTGA
GGGAAGGCGTGTGAAAAGAGGTTTGTGAATGTAAGACTGATGCGTGCGTG
CATTTACGTGCATGTCTGTGTTTTTACTTGTGGTGCAAGCGAAGCCAGCA
AATGTGCATGAGTGCGTGCGTATCGGGTTAAATGGATGAATGGATGGATG
GAAGGAAGGAGTAACTACTATAAATATACAAACCTACCATGCATGATTTG
TGAACTGAACGTGTGGATGTCAACCATATTGAGAATGCATTTTTATTTGT
TTTATTTGTTATGTCAACGAATGCCAGGAGGCACAAACGAGAAGGGTATG
ACGGATTGAAACAAAACAGACGAACAAACCACCAAATACAAC
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protein sequence of NO05G04310.1

>NO05G04310.1-protein ID=NO05G04310.1-protein|Name=NO05G04310.1|organism=Nannochloropsis oceanica|type=polypeptide|length=738bp
MSTNTNELPWWAPLGSPMFSSGATPAAACSRDTMTMTETTSKMEPSVPSS
PCARSVTFPECNSPQHRHGDEDMARRMRQVDDLEQRGLLDTYQGYVLKDM
ISHQEHAEDDAILNEAWAKHDAGDVTALVALANEGIMQETPSMDLLLEDL
DLCDFDFSKVNVEEAVLGTTRTASPPPPNPMTTSSEMPETPQNEVLDDSL
PLHPPCPSADSSTATSVAPLMQMPPQTTSMSSQQQILQQQQHQLQLLQQQ
LMQQQQQSAASSSSSSSLLPPPSLLQQQQFAKVLHQLQPQHQPQMTLLPT
GTTGATVYPPMMAAWGQQLLSTAPPQQIMWTAGTSGLSLAPIQAYPTNPL
LAGQSRQQGSTSTSGPATSSSGSGSSSRSDTSAPLSQEALQQYYLTLLTT
NASVGSSNCSSSSSSNNNNNYTKINNNSHSSNNSHTRNSSSSNSSSINTS
STPVPTLSTLTIPTAITIAAAASAAASSVGLVPGTRTHQHYMAKLIEAAV
AAQPWNARPPSSTKITTSSCPSSASSSAPSSSTTTTAAIATIPTPAALSS
SAVAAAANRMSTASSFPPKLSVATSKDEGEGHTHQLHQRYVGVYSPRSRR
GRIARYLDKRTKRNWDMKKRKNKGVYMGRRDLDTMVRVRGRFTKKVTAVV
TEAERKEMKNVGSLAGTTDIEEGRTEEEREREEEVKEEVRDFMDTFFDLT
SVDSEKEFASIFSSQPVGEMTGPTGAGGIGMSFDISF*
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mRNA from alignment at chr5:1107010..1110051-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G04310.1 ID=NO05G04310.1|Name=NO05G04310.1|organism=Nannochloropsis oceanica|type=mRNA|length=3042bp|location=Sequence derived from alignment at chr5:1107010..1110051- (Nannochloropsis oceanica)
GCCAAGAGAACAAAAGCGATGTGGATATAACTGCTCTTGCTTGCAATGCA CTCTTCGTTGTTTGTTTGTCCTCCCTCTGCTTGCACCTGCTTCTCTCTCA CACACACATGCTGCACTCCAAAGCTTGTCCTTCCCACAAAAAACATGATG GGCCAGTCGTGCGTGTACACAAAGCTCCCTGCTCCCTCCACCCACGCAAC CGAGAGCCGTTTACAGAGGAAGGAGCTACACCCCAGAGGCTATCTATACA CATAGATTCCTCCACACATATACCAATGCTCCCCTCTCTTCCAACACGTA CACAGGACACCCGCTGCCACACCTAGTGTGTGAGCTTTTAGGTCTGTGTG TCCGTGTGTCTTTGCCAAGAGGAGCTTGCACCGGCAACCGCCCAGTAGAA GTCAAGACGCTGCAACGCTCAACACTAGTGTTTCTACGAAAGACTGCTGC CATCTCGAAGACTCACACGCTCACGTCCATCAAAACATGAGCACAAACAC AAACGAGTTGCCGTGGTGGGCACCCTTAGGCTCGCCTATGTTTTCATCAG GGGCCACTCCTGCTGCAGCTTGCTCCCGCGACACGATGACGATGACCGAG ACTACTTCTAAGATGGAGCCCAGCGTACCATCGTCGCCCTGTGCCAGATC TGTCACATTCCCGGAGTGCAACAGCCCGCAGCACCGTCATGGGGACGAGG ATATGGCACGACGCATGCGGCAGGTGGATGACTTAGAACAGCGCGGCTTG CTAGACACGTATCAGGGTTATGTGCTTAAAGACATGATCTCTCATCAGGA GCACGCAGAGGACGACGCGATTTTGAACGAGGCGTGGGCAAAGCACGATG CTGGGGATGTGACAGCGCTAGTGGCGTTGGCGAATGAGGGAATCATGCAG GAGACCCCAAGCATGGACTTATTGTTGGAGGACCTGGACTTGTGTGATTT TGATTTTTCTAAGGTGAATGTAGAAGAGGCCGTTCTTGGGACGACGAGGA CGGCAAGTCCTCCTCCGCCTAACCCGATGACGACCAGTAGTGAAATGCCC GAGACTCCCCAAAATGAAGTTCTTGACGATTCCCTACCTTTGCATCCCCC CTGTCCTTCGGCAGACTCCTCGACTGCCACTTCTGTGGCCCCCCTGATGC AAATGCCACCACAAACTACAAGCATGTCTTCGCAGCAGCAGATACTGCAG CAGCAGCAGCATCAGCTGCAGCTGTTACAGCAGCAGCTCATGCAACAGCA GCAGCAGAGTGCTGCCTCCTCTTCCTCGTCCTCTTCGCTCTTGCCGCCGC CATCACTGCTGCAGCAGCAGCAATTCGCTAAGGTTCTTCATCAGCTTCAA CCGCAGCATCAGCCGCAAATGACTCTCCTCCCCACCGGAACAACCGGGGC CACTGTCTACCCGCCCATGATGGCTGCATGGGGACAACAACTTCTTTCCA CTGCCCCCCCTCAACAAATCATGTGGACTGCTGGAACCTCCGGCCTGTCC TTGGCCCCTATTCAAGCCTACCCCACCAACCCGCTGTTGGCAGGACAGTC TCGACAGCAGGGTTCTACTTCTACTAGTGGTCCGGCAACAAGCAGCAGCG GCAGCGGCAGCAGCAGCAGGAGCGACACCTCTGCTCCATTGTCTCAGGAA GCCCTGCAACAATATTACTTGACCTTACTCACTACTAATGCCTCCGTCGG GAGCAGCAACTGCAGCAGCAGCAGCAGCAGCAACAACAACAACAACTATA CCAAAATTAATAACAACAGCCACAGCAGCAACAACAGCCACACCAGAAAC AGCAGCAGCAGCAACAGCAGCAGTATTAATACTTCTTCCACTCCTGTTCC TACTCTTAGTACTCTTACTATTCCTACTGCTATTACAATTGCTGCTGCTG CTTCCGCCGCAGCATCGTCCGTGGGTTTAGTGCCCGGCACGCGCACCCAT CAACATTATATGGCCAAACTGATTGAAGCAGCCGTAGCCGCTCAACCCTG GAATGCACGCCCTCCCTCCTCCACCAAAATCACCACTTCCTCCTGCCCCT CCTCCGCCTCTAGCTCCGCCCCCTCCTCCTCCACCACCACCACCGCGGCA ATCGCCACCATTCCAACCCCCGCAGCACTCTCATCCTCAGCAGTAGCAGC AGCAGCTAACCGTATGAGCACGGCTTCTTCTTTTCCACCAAAGCTCTCTG TTGCTACCAGTAAAGACGAAGGCGAAGGCCACACACATCAGCTGCATCAG CGGTATGTGGGTGTCTACAGCCCTAGATCTCGCAGAGGACGCATAGCCCG ATATCTGGATAAGAGGACAAAGAGAAACTGGGACATGAAGAAGAGGAAGA ACAAGGGGGTGTATATGGGGAGAAGGGATTTGGACACTATGGTTAGGGTG AGGGGGAGGTTTACCAAGAAAGTGACGGCGGTGGTGACGGAGGCAGAGAG GAAGGAGATGAAAAACGTGGGATCTTTGGCAGGGACCACAGATATTGAGG AGGGACGGACGGAGGAGGAAAGGGAAAGGGAAGAAGAGGTGAAGGAGGAG GTGAGGGATTTTATGGATACGTTCTTTGACTTGACGTCGGTGGATTCGGA AAAGGAGTTTGCGTCTATCTTTTCATCTCAGCCTGTGGGGGAGATGACCG GACCGACGGGTGCCGGAGGGATAGGGATGTCGTTTGATATTTCATTTTGA GGGAAGGCGTGTGAAAAGAGGTTTGTGAATGTAAGACTGATGCGTGCGTG CATTTACGTGCATGTCTGTGTTTTTACTTGTGGTGCAAGCGAAGCCAGCA AATGTGCATGAGTGCGTGCGTATCGGGTTAAATGGATGAATGGATGGATG GAAGGAAGGAGTAACTACTATAAATATACAAACCTACCATGCATGATTTG TGAACTGAACGTGTGGATGTCAACCATATTGAGAATGCATTTTTATTTGT TTTATTTGTTATGTCAACGAATGCCAGGAGGCACAAACGAGAAGGGTATG ACGGATTGAAACAAAACAGACGAACAAACCACCAAATACAAC
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Coding sequence (CDS) from alignment at chr5:1107010..1110051-

>NO05G04310.1 ID=NO05G04310.1|Name=NO05G04310.1|organism=Nannochloropsis oceanica|type=CDS|length=2214bp|location=Sequence derived from alignment at chr5:1107010..1110051- (Nannochloropsis oceanica)
ATGAGCACAAACACAAACGAGTTGCCGTGGTGGGCACCCTTAGGCTCGCC
TATGTTTTCATCAGGGGCCACTCCTGCTGCAGCTTGCTCCCGCGACACGA
TGACGATGACCGAGACTACTTCTAAGATGGAGCCCAGCGTACCATCGTCG
CCCTGTGCCAGATCTGTCACATTCCCGGAGTGCAACAGCCCGCAGCACCG
TCATGGGGACGAGGATATGGCACGACGCATGCGGCAGGTGGATGACTTAG
AACAGCGCGGCTTGCTAGACACGTATCAGGGTTATGTGCTTAAAGACATG
ATCTCTCATCAGGAGCACGCAGAGGACGACGCGATTTTGAACGAGGCGTG
GGCAAAGCACGATGCTGGGGATGTGACAGCGCTAGTGGCGTTGGCGAATG
AGGGAATCATGCAGGAGACCCCAAGCATGGACTTATTGTTGGAGGACCTG
GACTTGTGTGATTTTGATTTTTCTAAGGTGAATGTAGAAGAGGCCGTTCT
TGGGACGACGAGGACGGCAAGTCCTCCTCCGCCTAACCCGATGACGACCA
GTAGTGAAATGCCCGAGACTCCCCAAAATGAAGTTCTTGACGATTCCCTA
CCTTTGCATCCCCCCTGTCCTTCGGCAGACTCCTCGACTGCCACTTCTGT
GGCCCCCCTGATGCAAATGCCACCACAAACTACAAGCATGTCTTCGCAGC
AGCAGATACTGCAGCAGCAGCAGCATCAGCTGCAGCTGTTACAGCAGCAG
CTCATGCAACAGCAGCAGCAGAGTGCTGCCTCCTCTTCCTCGTCCTCTTC
GCTCTTGCCGCCGCCATCACTGCTGCAGCAGCAGCAATTCGCTAAGGTTC
TTCATCAGCTTCAACCGCAGCATCAGCCGCAAATGACTCTCCTCCCCACC
GGAACAACCGGGGCCACTGTCTACCCGCCCATGATGGCTGCATGGGGACA
ACAACTTCTTTCCACTGCCCCCCCTCAACAAATCATGTGGACTGCTGGAA
CCTCCGGCCTGTCCTTGGCCCCTATTCAAGCCTACCCCACCAACCCGCTG
TTGGCAGGACAGTCTCGACAGCAGGGTTCTACTTCTACTAGTGGTCCGGC
AACAAGCAGCAGCGGCAGCGGCAGCAGCAGCAGGAGCGACACCTCTGCTC
CATTGTCTCAGGAAGCCCTGCAACAATATTACTTGACCTTACTCACTACT
AATGCCTCCGTCGGGAGCAGCAACTGCAGCAGCAGCAGCAGCAGCAACAA
CAACAACAACTATACCAAAATTAATAACAACAGCCACAGCAGCAACAACA
GCCACACCAGAAACAGCAGCAGCAGCAACAGCAGCAGTATTAATACTTCT
TCCACTCCTGTTCCTACTCTTAGTACTCTTACTATTCCTACTGCTATTAC
AATTGCTGCTGCTGCTTCCGCCGCAGCATCGTCCGTGGGTTTAGTGCCCG
GCACGCGCACCCATCAACATTATATGGCCAAACTGATTGAAGCAGCCGTA
GCCGCTCAACCCTGGAATGCACGCCCTCCCTCCTCCACCAAAATCACCAC
TTCCTCCTGCCCCTCCTCCGCCTCTAGCTCCGCCCCCTCCTCCTCCACCA
CCACCACCGCGGCAATCGCCACCATTCCAACCCCCGCAGCACTCTCATCC
TCAGCAGTAGCAGCAGCAGCTAACCGTATGAGCACGGCTTCTTCTTTTCC
ACCAAAGCTCTCTGTTGCTACCAGTAAAGACGAAGGCGAAGGCCACACAC
ATCAGCTGCATCAGCGGTATGTGGGTGTCTACAGCCCTAGATCTCGCAGA
GGACGCATAGCCCGATATCTGGATAAGAGGACAAAGAGAAACTGGGACAT
GAAGAAGAGGAAGAACAAGGGGGTGTATATGGGGAGAAGGGATTTGGACA
CTATGGTTAGGGTGAGGGGGAGGTTTACCAAGAAAGTGACGGCGGTGGTG
ACGGAGGCAGAGAGGAAGGAGATGAAAAACGTGGGATCTTTGGCAGGGAC
CACAGATATTGAGGAGGGACGGACGGAGGAGGAAAGGGAAAGGGAAGAAG
AGGTGAAGGAGGAGGTGAGGGATTTTATGGATACGTTCTTTGACTTGACG
TCGGTGGATTCGGAAAAGGAGTTTGCGTCTATCTTTTCATCTCAGCCTGT
GGGGGAGATGACCGGACCGACGGGTGCCGGAGGGATAGGGATGTCGTTTG
ATATTTCATTTTGA
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Synonyms
Publications