NO05G04300.1, NO05G04300.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G04300.1
Unique NameNO05G04300.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1804
Alignment locationchr5:1105189..1106992 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1105189..1106992 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G04300.1 vs.
Match: EWM27943.1 (ntp pyrophosphohydrolase [Nannochloropsis gaditana])

HSP 1 Score: 333.6 bits (854), Expect = 9.000e-88
Identity = 211/416 (50.72%), Postives = 259/416 (62.26%), Query Frame = 0 
Query:   18 VLVGQAANANSPCKYLHRPPQAGFLRTRRPPFSRSCYSSTRPRSIMASPSSTYSFTSSAFFTWVADYEI-------NLQSSNLQSSSASIAPPTFNSNGNDETTVTSPTILLPPNVTAAATDLHPLSEPTLSS---------PPPNKPLAKLWTIRRRLDSNSSIKHTLAGIAGIAIPTTSDAQPRPFLLADSVLEQDKNVCKLLLRGL-------GGDNSEAPVSDEKEVEHVSWVDNHGHDLLSLTSKGLPRPLVHRLNILHKGAGILVRDEQKRVFVHQRAAHKRLFPSMYDMFVGGVSLFGEDTRETAGRELKEELGFWREGGEGNEEA--FRFLFHVLIETSYNRCFVDVYEYVVHTGEEGGKVRLDSEEVQWGEWATMEEVKRRVALDGQEGQWTFVPDGLLVWRALVQA 409
            +LV + A  +  C     P +A  +   RP    S   ST+      SPSS++S TSSA+ TW+A Y+I       NLQS +L   SA      FN N +D+T   S T   P   TA++  L   +   LS+         PP    LAKLWT+  R     S K  LAG+AG+  P   +A P  FLLAD  L Q++ VC L+LR L           ++     E++VE VSWV+NHGHDLL  +SKGLPRPL+HRLN+LHKGAGILVRD Q RVFVHQR+AHKR+FPS+YDMFVGGVSLF EDT+ TA REL+EELGF        EE+  FRFLF +L+ETSYNRCFVDVYEYVV  G+E    +LD EEVQWG+W  MEEV RRV L+G  G+WTFVPDGLLVW A ++A
Sbjct:   71 LLVAELATRSGGC--FLTPSRATTMPRLRP---ESAKLSTKA----VSPSSSFSSTSSAY-TWIAAYKIEELSRFSNLQSLHLNWQSA------FNYN-SDKTIAHSMTS--PAEHTASSFTLQASTSSNLSALDGLGWSRPPPATASLAKLWTVWHR-PGTCSDKPLLAGVAGL--PECDEAGP--FLLADKSLRQEEEVCNLILRALEKNPVRHSSSATQYEADGEEKVERVSWVNNHGHDLLPKSSKGLPRPLMHRLNVLHKGAGILVRDAQSRVFVHQRSAHKRIFPSLYDMFVGGVSLFREDTKTTARRELQEELGFGPAASAAEEESTDFRFLFDILVETSYNRCFVDVYEYVVEGGQE-ESAKLDPEEVQWGDWIPMEEVTRRVLLNGLSGEWTFVPDGLLVWAAFLRA 461
The following BLAST results are available for this feature:
BLAST of NO05G04300.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27943.19.000e-8850.72ntp pyrophosphohydrolase [Nannochloropsis gaditana... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G04300NO05G04300Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G04300.1NO05G04300.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G04300.1.cds1NO05G04300.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G04300.1 ID=NO05G04300.1|Name=NO05G04300.1|organism=Nannochloropsis oceanica|type=mRNA|length=1804bp
CTCGTTCGCCGCTCATCTTTAACCGACTTATGAAGACCTCCTGAGCCCCA
CACCAGAATTTTCCATGTGGCTAGATCAGAGGAGGACAAGACTGCCTTCA
CATTGTATTTTTTAATGGACGGGTGCCGGGTGCATTTGGTATTTGATGTT
TGCAAGGAGGCACGAAAAGACGTCTCATAACTTCAATTTGTGTGTCGCCA
TCTCATCAGAAGGTCCGTGGACGGAGAAACGGCAGAGGGACTGATGATGA
GGAGCTGAACAAGTTGTCCCAGAACCTGTCAGCTCAAGATAAGGTTGGCA
CAAAATCGCGGTCAGACTGAATAATTAGATGGTGGTCAGTTTACGACGGA
TTGCAACAGCAGGAGTCAGGACTTAGCAGGCTAGTGCTCAATCCCCAATA
AGCAGTATTGATCCACTATTAATGATGAATCAATTTTCGACGTCCTGCAA
AACTCAATAACGTTCAATTCAACAGGCAAGTGCCGGTGCATGATCGCAGG
CAAGGTCTGCCCGAGCGCCGCCTTTTCGGTTCTCGTCCTGGTCCTCGTTG
GGCAGGCTGCGAACGCGAATTCTCCCTGCAAATACCTGCATCGACCTCCC
CAAGCCGGTTTCCTAAGAACGAGAAGGCCGCCATTTTCCCGTTCCTGTTA
TTCAAGTACAAGACCAAGGTCAATCATGGCTTCTCCCTCGTCCACCTATT
CTTTTACCTCCTCTGCGTTCTTCACTTGGGTTGCCGACTACGAGATCAAC
CTGCAATCCTCCAATCTTCAATCCTCCTCCGCGTCCATCGCCCCGCCGAC
TTTCAACAGCAACGGTAACGATGAAACTACCGTGACTTCTCCGACAATTC
TTTTACCCCCCAATGTCACCGCCGCGGCCACAGACTTGCATCCTCTTTCC
GAACCAACATTGTCTTCTCCTCCCCCCAACAAACCTTTGGCCAAGCTATG
GACGATCCGGCGCCGTTTGGACAGCAACAGCAGCATCAAGCATACCTTGG
CGGGTATAGCGGGCATTGCAATACCAACAACATCAGACGCACAACCAAGA
CCGTTTCTCCTTGCAGATTCGGTGCTGGAACAGGACAAGAACGTGTGCAA
GCTGCTGCTGCGCGGCCTCGGTGGCGACAACTCTGAAGCGCCTGTGTCAG
ACGAAAAGGAAGTGGAGCACGTGTCCTGGGTTGACAATCACGGGCATGAC
CTTCTCTCACTCACAAGCAAGGGTTTGCCCCGGCCCTTGGTACATCGATT
GAATATTCTGCATAAAGGCGCAGGAATTCTGGTGCGTGATGAACAAAAGC
GAGTCTTTGTCCACCAGCGGGCGGCGCACAAGCGGCTTTTTCCTTCCATG
TACGACATGTTTGTAGGTGGTGTGAGTTTATTCGGAGAGGATACGAGGGA
GACGGCCGGCAGGGAGCTGAAAGAAGAGTTGGGGTTTTGGCGGGAGGGAG
GAGAGGGGAACGAGGAAGCATTTCGATTCTTGTTTCATGTGCTGATTGAG
ACGAGTTATAATCGTTGCTTTGTGGATGTATACGAGTATGTGGTTCACAC
CGGGGAGGAGGGAGGGAAAGTTAGGTTGGATTCGGAAGAGGTGCAGTGGG
GAGAATGGGCGACGATGGAAGAGGTAAAAAGGAGAGTGGCTTTGGATGGG
CAGGAGGGACAGTGGACGTTTGTCCCCGATGGGTTGTTAGTGTGGAGGGC
GCTGGTTCAGGCGCAAGGTGGGGAGGAGGGGGTAGTATGAGCTTTAAACA
AGCTTATGAAATCAAAAGAAGGGAAAAGCAGTAGTGTCGTTCACAAAGAA
AAGA
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protein sequence of NO05G04300.1

>NO05G04300.1-protein ID=NO05G04300.1-protein|Name=NO05G04300.1|organism=Nannochloropsis oceanica|type=polypeptide|length=417bp
MIAGKVCPSAAFSVLVLVLVGQAANANSPCKYLHRPPQAGFLRTRRPPFS
RSCYSSTRPRSIMASPSSTYSFTSSAFFTWVADYEINLQSSNLQSSSASI
APPTFNSNGNDETTVTSPTILLPPNVTAAATDLHPLSEPTLSSPPPNKPL
AKLWTIRRRLDSNSSIKHTLAGIAGIAIPTTSDAQPRPFLLADSVLEQDK
NVCKLLLRGLGGDNSEAPVSDEKEVEHVSWVDNHGHDLLSLTSKGLPRPL
VHRLNILHKGAGILVRDEQKRVFVHQRAAHKRLFPSMYDMFVGGVSLFGE
DTRETAGRELKEELGFWREGGEGNEEAFRFLFHVLIETSYNRCFVDVYEY
VVHTGEEGGKVRLDSEEVQWGEWATMEEVKRRVALDGQEGQWTFVPDGLL
VWRALVQAQGGEEGVV*
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mRNA from alignment at chr5:1105189..1106992+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G04300.1 ID=NO05G04300.1|Name=NO05G04300.1|organism=Nannochloropsis oceanica|type=mRNA|length=1804bp|location=Sequence derived from alignment at chr5:1105189..1106992+ (Nannochloropsis oceanica)
CTCGTTCGCCGCTCATCTTTAACCGACTTATGAAGACCTCCTGAGCCCCA
CACCAGAATTTTCCATGTGGCTAGATCAGAGGAGGACAAGACTGCCTTCA
CATTGTATTTTTTAATGGACGGGTGCCGGGTGCATTTGGTATTTGATGTT
TGCAAGGAGGCACGAAAAGACGTCTCATAACTTCAATTTGTGTGTCGCCA
TCTCATCAGAAGGTCCGTGGACGGAGAAACGGCAGAGGGACTGATGATGA
GGAGCTGAACAAGTTGTCCCAGAACCTGTCAGCTCAAGATAAGGTTGGCA
CAAAATCGCGGTCAGACTGAATAATTAGATGGTGGTCAGTTTACGACGGA
TTGCAACAGCAGGAGTCAGGACTTAGCAGGCTAGTGCTCAATCCCCAATA
AGCAGTATTGATCCACTATTAATGATGAATCAATTTTCGACGTCCTGCAA
AACTCAATAACGTTCAATTCAACAGGCAAGTGCCGGTGCATGATCGCAGG
CAAGGTCTGCCCGAGCGCCGCCTTTTCGGTTCTCGTCCTGGTCCTCGTTG
GGCAGGCTGCGAACGCGAATTCTCCCTGCAAATACCTGCATCGACCTCCC
CAAGCCGGTTTCCTAAGAACGAGAAGGCCGCCATTTTCCCGTTCCTGTTA
TTCAAGTACAAGACCAAGGTCAATCATGGCTTCTCCCTCGTCCACCTATT
CTTTTACCTCCTCTGCGTTCTTCACTTGGGTTGCCGACTACGAGATCAAC
CTGCAATCCTCCAATCTTCAATCCTCCTCCGCGTCCATCGCCCCGCCGAC
TTTCAACAGCAACGGTAACGATGAAACTACCGTGACTTCTCCGACAATTC
TTTTACCCCCCAATGTCACCGCCGCGGCCACAGACTTGCATCCTCTTTCC
GAACCAACATTGTCTTCTCCTCCCCCCAACAAACCTTTGGCCAAGCTATG
GACGATCCGGCGCCGTTTGGACAGCAACAGCAGCATCAAGCATACCTTGG
CGGGTATAGCGGGCATTGCAATACCAACAACATCAGACGCACAACCAAGA
CCGTTTCTCCTTGCAGATTCGGTGCTGGAACAGGACAAGAACGTGTGCAA
GCTGCTGCTGCGCGGCCTCGGTGGCGACAACTCTGAAGCGCCTGTGTCAG
ACGAAAAGGAAGTGGAGCACGTGTCCTGGGTTGACAATCACGGGCATGAC
CTTCTCTCACTCACAAGCAAGGGTTTGCCCCGGCCCTTGGTACATCGATT
GAATATTCTGCATAAAGGCGCAGGAATTCTGGTGCGTGATGAACAAAAGC
GAGTCTTTGTCCACCAGCGGGCGGCGCACAAGCGGCTTTTTCCTTCCATG
TACGACATGTTTGTAGGTGGTGTGAGTTTATTCGGAGAGGATACGAGGGA
GACGGCCGGCAGGGAGCTGAAAGAAGAGTTGGGGTTTTGGCGGGAGGGAG
GAGAGGGGAACGAGGAAGCATTTCGATTCTTGTTTCATGTGCTGATTGAG
ACGAGTTATAATCGTTGCTTTGTGGATGTATACGAGTATGTGGTTCACAC
CGGGGAGGAGGGAGGGAAAGTTAGGTTGGATTCGGAAGAGGTGCAGTGGG
GAGAATGGGCGACGATGGAAGAGGTAAAAAGGAGAGTGGCTTTGGATGGG
CAGGAGGGACAGTGGACGTTTGTCCCCGATGGGTTGTTAGTGTGGAGGGC
GCTGGTTCAGGCGCAAGGTGGGGAGGAGGGGGTAGTATGAGCTTTAAACA
AGCTTATGAAATCAAAAGAAGGGAAAAGCAGTAGTGTCGTTCACAAAGAA
AAGA
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Coding sequence (CDS) from alignment at chr5:1105189..1106992+

>NO05G04300.1 ID=NO05G04300.1|Name=NO05G04300.1|organism=Nannochloropsis oceanica|type=CDS|length=1251bp|location=Sequence derived from alignment at chr5:1105189..1106992+ (Nannochloropsis oceanica)
ATGATCGCAGGCAAGGTCTGCCCGAGCGCCGCCTTTTCGGTTCTCGTCCT
GGTCCTCGTTGGGCAGGCTGCGAACGCGAATTCTCCCTGCAAATACCTGC
ATCGACCTCCCCAAGCCGGTTTCCTAAGAACGAGAAGGCCGCCATTTTCC
CGTTCCTGTTATTCAAGTACAAGACCAAGGTCAATCATGGCTTCTCCCTC
GTCCACCTATTCTTTTACCTCCTCTGCGTTCTTCACTTGGGTTGCCGACT
ACGAGATCAACCTGCAATCCTCCAATCTTCAATCCTCCTCCGCGTCCATC
GCCCCGCCGACTTTCAACAGCAACGGTAACGATGAAACTACCGTGACTTC
TCCGACAATTCTTTTACCCCCCAATGTCACCGCCGCGGCCACAGACTTGC
ATCCTCTTTCCGAACCAACATTGTCTTCTCCTCCCCCCAACAAACCTTTG
GCCAAGCTATGGACGATCCGGCGCCGTTTGGACAGCAACAGCAGCATCAA
GCATACCTTGGCGGGTATAGCGGGCATTGCAATACCAACAACATCAGACG
CACAACCAAGACCGTTTCTCCTTGCAGATTCGGTGCTGGAACAGGACAAG
AACGTGTGCAAGCTGCTGCTGCGCGGCCTCGGTGGCGACAACTCTGAAGC
GCCTGTGTCAGACGAAAAGGAAGTGGAGCACGTGTCCTGGGTTGACAATC
ACGGGCATGACCTTCTCTCACTCACAAGCAAGGGTTTGCCCCGGCCCTTG
GTACATCGATTGAATATTCTGCATAAAGGCGCAGGAATTCTGGTGCGTGA
TGAACAAAAGCGAGTCTTTGTCCACCAGCGGGCGGCGCACAAGCGGCTTT
TTCCTTCCATGTACGACATGTTTGTAGGTGGTGTGAGTTTATTCGGAGAG
GATACGAGGGAGACGGCCGGCAGGGAGCTGAAAGAAGAGTTGGGGTTTTG
GCGGGAGGGAGGAGAGGGGAACGAGGAAGCATTTCGATTCTTGTTTCATG
TGCTGATTGAGACGAGTTATAATCGTTGCTTTGTGGATGTATACGAGTAT
GTGGTTCACACCGGGGAGGAGGGAGGGAAAGTTAGGTTGGATTCGGAAGA
GGTGCAGTGGGGAGAATGGGCGACGATGGAAGAGGTAAAAAGGAGAGTGG
CTTTGGATGGGCAGGAGGGACAGTGGACGTTTGTCCCCGATGGGTTGTTA
GTGTGGAGGGCGCTGGTTCAGGCGCAAGGTGGGGAGGAGGGGGTAGTATG
A
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Synonyms
Publications